Lsi06G016690 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G016690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	CASP-like protein
Location	chr06 : 26942183 .. 26942752 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACGATATGGAGGAATCGCAGCCCAAATCCAATTCCCATTCTTCTTCCCTCCACCTTTATTCTCAGATTATCCTCAGAGCTTTGGTAATTTCCTCCACATTGGCTTCCACCTTACTCATCCTCTCCGCCAAGCAATCCGTCCTCATTTTTGGCATCCCTTTTGAAGCCCGATATACCTACTCCTCTGCTTTCAAATTTTTCGCTTTCGCAAACGCTATTTCATCTGCCTTCTGTTTTCTCTCCGCCTGTTTTCTTTTCATATCACGTCGGCAATTGGCCTCGGGGAATAATCATGGAACCATCAACAGAAATTACTACATCTTCTTTCTCCACGACTTGTTGATTATGTTATTGGTACTCAGCGGATGCTCTGCCGCAACCGCGATCGGTTACATAGGGAAGTACGGCAACAGCTACACAGGATGGTCTCCTATCTGTGATCATTTCGGCAAGTTTTGCAATCGGGTCACTACTTCCCTTGCCATCTCTTATTTTGCTGTTCTCTGCCTTCTCATACTCATCATCCTCTCTGCAACTGCAAATCCATCATTAACATCACGCTAA

mRNA sequence

ATGGCCGACGATATGGAGGAATCGCAGCCCAAATCCAATTCCCATTCTTCTTCCCTCCACCTTTATTCTCAGATTATCCTCAGAGCTTTGGTAATTTCCTCCACATTGGCTTCCACCTTACTCATCCTCTCCGCCAAGCAATCCGTCCTCATTTTTGGCATCCCTTTTGAAGCCCGATATACCTACTCCTCTGCTTTCAAATTTTTCGCTTTCGCAAACGCTATTTCATCTGCCTTCTGTTTTCTCTCCGCCTGTTTTCTTTTCATATCACGTCGGCAATTGGCCTCGGGGAATAATCATGGAACCATCAACAGAAATTACTACATCTTCTTTCTCCACGACTTGTTGATTATGTTATTGGTACTCAGCGGATGCTCTGCCGCAACCGCGATCGGTTACATAGGGAAGTACGGCAACAGCTACACAGGATGGTCTCCTATCTGTGATCATTTCGGCAAGTTTTGCAATCGGGTCACTACTTCCCTTGCCATCTCTTATTTTGCTGTTCTCTGCCTTCTCATACTCATCATCCTCTCTGCAACTGCAAATCCATCATTAACATCACGCTAA

Coding sequence (CDS)

ATGGCCGACGATATGGAGGAATCGCAGCCCAAATCCAATTCCCATTCTTCTTCCCTCCACCTTTATTCTCAGATTATCCTCAGAGCTTTGGTAATTTCCTCCACATTGGCTTCCACCTTACTCATCCTCTCCGCCAAGCAATCCGTCCTCATTTTTGGCATCCCTTTTGAAGCCCGATATACCTACTCCTCTGCTTTCAAATTTTTCGCTTTCGCAAACGCTATTTCATCTGCCTTCTGTTTTCTCTCCGCCTGTTTTCTTTTCATATCACGTCGGCAATTGGCCTCGGGGAATAATCATGGAACCATCAACAGAAATTACTACATCTTCTTTCTCCACGACTTGTTGATTATGTTATTGGTACTCAGCGGATGCTCTGCCGCAACCGCGATCGGTTACATAGGGAAGTACGGCAACAGCTACACAGGATGGTCTCCTATCTGTGATCATTTCGGCAAGTTTTGCAATCGGGTCACTACTTCCCTTGCCATCTCTTATTTTGCTGTTCTCTGCCTTCTCATACTCATCATCCTCTCTGCAACTGCAAATCCATCATTAACATCACGCTAA

Protein sequence

MADDMEESQPKSNSHSSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARYTYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSATANPSLTSR

Homology

[Close]

BLAST of Lsi06G016690 vs. Swiss-Prot
Match: CSPL3_POPTR (CASP-like protein 1F2 OS=Populus trichocarpa GN=POPTRDRAFT_823430 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-36
Identity = 87/181 (48.07%), Postives = 121/181 (66.85%), Query Frame = 1


Query: 1   MADDMEESQPKSNSHSSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARY 60
           MAD   +S       + ++ + +QI LR +VI+++ AST L+L+ KQ++ I G   +A Y
Sbjct: 1   MADIETKSSQNQPLKTQNIFIGAQIFLRIVVIAASFASTWLMLTNKQTIDIGGFVLDANY 60

Query: 61  TYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLL 120
           +YS  FKF ++AN +  AF F+S  FL +  R+ ++          Y+I FLHDL +M L
Sbjct: 61  SYSPEFKFLSYANIVVGAFSFVSLLFLVLVGRRSSNPTY-------YFILFLHDLALMSL 120

Query: 121 VLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSA 180
           VL GC+AAT IG +GKYGNS+TGW  ICDHFGKFC R TTS+A SYF+++CLLIL I SA
Sbjct: 121 VLGGCAAATVIGSLGKYGNSHTGWMQICDHFGKFCKRATTSVAFSYFSLVCLLILTITSA 174

Query: 181 T 182
           +
Sbjct: 181 S 174

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BLAST of Lsi06G016690 vs. Swiss-Prot
Match: CSPL8_RICCO (CASP-like protein 1F1 OS=Ricinus communis GN=RCOM_1504680 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-32
Identity = 86/178 (48.31%), Postives = 117/178 (65.73%), Query Frame = 1


Query: 5   MEESQPKSNS--HSSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARYTY 64
           ME  + K NS   S  L + +QI LR + I +TLA+T ++++ KQS+        A+Y Y
Sbjct: 1   MENVEDKYNSPLKSQKLFIGAQICLRIVTIGATLAATWIMVTDKQSITFGDFVMVAKYNY 60

Query: 65  SSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVL 124
           SSAFKFF  AN I+ A   +S  FL    R     +N G +    ++ FLHDLL+M LVL
Sbjct: 61  SSAFKFFVLANVIACACSVVSLLFLCALGRY---SSNPGHV----FLLFLHDLLMMSLVL 120

Query: 125 SGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSA 181
           +GCSAATAIG++GKYGN+ +GW PICD FG+FCNR T S+ +SY +++CLLIL + SA
Sbjct: 121 AGCSAATAIGFLGKYGNTKSGWMPICDQFGQFCNRGTISMMLSYLSMVCLLILTVTSA 171

[Close]

BLAST of Lsi06G016690 vs. Swiss-Prot
Match: CSPLH_POPTR (CASP-like protein 1F1 OS=Populus trichocarpa GN=POPTRDRAFT_824792 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.0e-32
Identity = 79/166 (47.59%), Postives = 110/166 (66.27%), Query Frame = 1


Query: 16  SSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARYTYSSAFKFFAFANAI 75
           +  L +  QI  R + I++++AS+ L++++KQ + I GI  +ARY+YS  FKF AF N +
Sbjct: 16  TQKLFIGVQIFFRIVAIAASVASSWLMITSKQVIDIGGIVLDARYSYSPEFKFLAFTNIV 75

Query: 76  SSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCSAATAIGYIG 135
              F  LS  FL +  RQ  S  NH      Y+  FLHDL +M LV+ GC+AAT +G++G
Sbjct: 76  VGCFSLLSLLFLVLVVRQ-GSNPNH------YFFLFLHDLAMMSLVVGGCAAATTVGFLG 135

Query: 136 KYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSAT 182
           K+GNS+TGW  ICD+FGKFCNR  TS+ ISY  ++CL IL I SA+
Sbjct: 136 KHGNSHTGWMQICDNFGKFCNRAQTSVTISYLNLICLSILTITSAS 174

[Close]

BLAST of Lsi06G016690 vs. Swiss-Prot
Match: CSPL4_VITVI (CASP-like protein 1F1 OS=Vitis vinifera GN=VIT_17s0000g00560 PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 2.8e-30
Identity = 77/174 (44.25%), Postives = 114/174 (65.52%), Query Frame = 1


Query: 7   ESQPKSNSHSSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARYTYSSAF 66
           +  P   +H   L L + I LR L +++TL +  +++++KQ+V ++GI  EA+Y+YSSAF
Sbjct: 34  QQNPPLGTHK--LFLGAHICLRILTVTATLTAAWMMITSKQTVEVYGIQVEAKYSYSSAF 93

Query: 67  KFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCS 126
           KFF++ANAI+   C  S   LF       S    G+    ++  FLHDL +M LVL+GC+
Sbjct: 94  KFFSYANAIA---CGCSVLTLF----PAFSLFYRGSTPMKFFFLFLHDLCMMSLVLAGCA 153

Query: 127 AATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSA 181
           AATAIGY+G+YGN++ GW  ICD F ++CNR+  SL  SY A + +L+L I+SA
Sbjct: 154 AATAIGYVGRYGNNHAGWMAICDQFDEYCNRIRLSLMFSYLAFVFILMLTIMSA 198

[Close]

BLAST of Lsi06G016690 vs. Swiss-Prot
Match: CSPLA_RICCO (CASP-like protein 1F2 OS=Ricinus communis GN=RCOM_1446020 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 69/173 (39.88%), Postives = 110/173 (63.58%), Query Frame = 1


Query: 8   SQPKSNSHSSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARYTYSSAFK 67
           SQPK       +   +Q+I R L I+  +AS   ++++ Q+V++FG+   ARY+YSSAF+
Sbjct: 25  SQPKR------IFFMAQVIFRILAIAFAVASISAMVTSDQNVIVFGMDTAARYSYSSAFR 84

Query: 68  FFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCSA 127
           F   ANA+   F  LS  F+ +  R+     +   + +NYY+F LHD+++M++++SGCSA
Sbjct: 85  FLVGANAVVCGFSVLSLIFVCLMSRR-----SEAILEKNYYLF-LHDMVMMVMMVSGCSA 144

Query: 128 ATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSA 181
           ATAIGY+G+YG     W+ +CD  GKFCN+   S+ ++Y A+ C + L  L+A
Sbjct: 145 ATAIGYVGRYGEKEITWTAVCDFVGKFCNQALVSIVLAYLALFCYVALTTLAA 185

[Close]

BLAST of Lsi06G016690 vs. TrEMBL
Match: A0A0A0LR45_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_1G000725 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 120/183 (65.57%), Postives = 147/183 (80.33%), Query Frame = 1


Query: 2   ADDMEESQPKSNSHSSSLHL-YSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARY 61
           +DD +   P +    ++LHL YSQIILR L I+STLA+T +IL+AKQSVLIFGIPF+ARY
Sbjct: 21  SDDHDHDHPTA---ITNLHLCYSQIILRVLAIASTLAATWIILTAKQSVLIFGIPFDARY 80

Query: 62  TYSSAFKFFAFANAISSAFCFLSACFL-FISRRQLASGNNHGTINRNYYIFF---LHDLL 121
             SSAF+FFAFANAI+SAFCFLS CFL F+S R     +++ +   N+YIFF   LHDLL
Sbjct: 81  NDSSAFQFFAFANAIASAFCFLSLCFLIFLSTRP----SSNTSTPLNFYIFFFFRLHDLL 140

Query: 122 IMLLVLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILI 180
           +M LVLSGCSAATAIG++GKYGN++TGWSPIC+HF  FCNRVT S+AISYF+V+CLLIL 
Sbjct: 141 MMGLVLSGCSAATAIGFVGKYGNTHTGWSPICNHFPSFCNRVTASIAISYFSVICLLILT 196

[Close]

BLAST of Lsi06G016690 vs. TrEMBL
Match: A0A067DNP5_CITSI (CASP-like protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039472mg PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-38
Identity = 95/187 (50.80%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 4   DMEESQ----PKSNSHSSSLHLY-----SQIILRALVISSTLASTLLILSAKQSVLIFGI 63
           +ME SQ    P+S  H   L        +QI LR L I++ LA+T +IL++KQ ++IFGI
Sbjct: 41  NMESSQAIKFPQSQPHHQPLKYQKRFHVAQICLRILAIATALAATWVILTSKQHLVIFGI 100

Query: 64  PFEARYTYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHD 123
           PF+ARY+YSSAFKFFAFAN  +SAF  LS  +L I             +  NY++ FLHD
Sbjct: 101 PFDARYSYSSAFKFFAFANVAASAFSLLSLLYLLI-------------VPANYFLLFLHD 160

Query: 124 LLIMLLVLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLI 182
           L  M L+L+GC+AATA+GYIG+YGN + GW  IC+ FGKFCN+VT S+ +SY + LCLL+
Sbjct: 161 LFTMSLLLAGCAAATAVGYIGRYGNEHIGWMAICEQFGKFCNKVTASVILSYLSFLCLLV 214

[Close]

BLAST of Lsi06G016690 vs. TrEMBL
Match: V4TAA7_9ROSI (CASP-like protein OS=Citrus clementina GN=CICLE_v10032880mg PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-37
Identity = 94/186 (50.54%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 5   MEESQ----PKSNSHSSSLHLY-----SQIILRALVISSTLASTLLILSAKQSVLIFGIP 64
           ME SQ    P+S  H   L        +QI LR L I++ LA+T +IL++KQ ++IFGIP
Sbjct: 1   MESSQAIKFPQSQPHHQPLKYQKRFHVAQICLRILAIATALAATWVILTSKQHLVIFGIP 60

Query: 65  FEARYTYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDL 124
           F+ARY+YSSAFKFFAFAN  +SAF  LS  +L I             +  +Y++ FLHDL
Sbjct: 61  FDARYSYSSAFKFFAFANVAASAFSLLSLLYLLI-------------VPASYFLLFLHDL 120

Query: 125 LIMLLVLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLIL 182
             M L+L+GC+AATA+GYIG+YGN + GW  IC+ FGKFCN+VT S+ +SY + LCLL+L
Sbjct: 121 FTMSLLLAGCAAATAVGYIGRYGNEHIGWMAICEQFGKFCNKVTASVMLSYLSFLCLLVL 173

[Close]

BLAST of Lsi06G016690 vs. TrEMBL
Match: W9QUY0_9ROSA (CASP-like protein OS=Morus notabilis GN=L484_008838 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.9e-37
Identity = 94/181 (51.93%), Postives = 123/181 (67.96%), Query Frame = 1


Query: 1   MADDMEESQPKSNSHSSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARY 60
           MA+   + Q      + +L   +QI LR L ++STLA+T +IL++KQS+ I GI FEARY
Sbjct: 1   MANTEAKFQQNPPQKTQNLFFGAQICLRILAVASTLAATWIILTSKQSIEIIGITFEARY 60

Query: 61  TYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLL 120
           +YS AFKFFA ANA++ A    +   +F  RR   +         NY+I FLHDL ++ L
Sbjct: 61  SYSPAFKFFALANALACALSATTLFLVFFFRRIFLNP-------ANYFILFLHDLSLLSL 120

Query: 121 VLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSA 180
           VLSGC+AATA+GY+G+YGNS+ GWS ICDHF K+C RVTTS A SY AVL  L+L ILSA
Sbjct: 121 VLSGCAAATAVGYVGQYGNSHAGWSRICDHFEKYCKRVTTSAAFSYLAVLFFLVLTILSA 174

Query: 181 T 182
           +
Sbjct: 181 S 174

[Close]

BLAST of Lsi06G016690 vs. TrEMBL
Match: A0A061FZU4_THECC (CASP-like protein OS=Theobroma cacao GN=TCM_014723 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.4e-37
Identity = 91/180 (50.56%), Postives = 127/180 (70.56%), Query Frame = 1


Query: 3   DDMEESQPKSNS-HSSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARYT 62
           + +E   P++ S  +  L L +QI LR + I++ LA+T ++L++KQ+V++FGIPF+ARY+
Sbjct: 2   ESIEAKFPENPSLKTHKLVLGAQICLRIVAIATALAATWVMLTSKQTVMVFGIPFDARYS 61

Query: 63  YSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLV 122
           YSSAFKFFAFANA +  F  LS  F+F   R+       G    NY++ FLHDLL+M L 
Sbjct: 62  YSSAFKFFAFANAFACGFTVLSLLFVFFFSRR-------GLTPANYFLLFLHDLLMMSLA 121

Query: 123 LSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSAT 182
           LSG +A TAIGY+G++GN + GW  ICD  GKFC++VT SL  SY +VLCLL+L I+SA+
Sbjct: 122 LSGVAAGTAIGYVGRFGNIHAGWLQICDRLGKFCHKVTASLIFSYLSVLCLLVLTIISAS 174

[Close]

BLAST of Lsi06G016690 vs. TAIR10
Match: AT4G25040.1 (AT4G25040.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-21
Identity = 65/167 (38.92%), Postives = 100/167 (59.88%), Query Frame = 1


Query: 19  LHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARYTYSSAFKFFAFAN-AISS 78
           L+L  Q+ +R L I + +AS  ++++ ++   ++GI FEA+Y+YSSAF++  +A  A+ +
Sbjct: 13  LNLGVQVSMRVLTIGAAMASMWVMITNREVASVYGIAFEAKYSYSSAFRYLVYAQIAVCA 72

Query: 79  A--FCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCSAATAIGYIG 138
           A  F  + AC L + RR L             +  F  DLL  L  +S  SAA A GY+G
Sbjct: 73  ATLFTLVWAC-LAVRRRGLV------------FALFFFDLLTTLTAISAFSAAFAEGYVG 132

Query: 139 KYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSATA 183
           KYGN   GW PIC +   +C+RVT SLA+S+ + + L IL +L+A+A
Sbjct: 133 KYGNKQAGWLPICGYVHGYCSRVTISLAMSFASFILLFILTVLTASA 166

[Close]

BLAST of Lsi06G016690 vs. TAIR10
Match: AT4G03540.1 (AT4G03540.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 77.8 bits (190), Expect = 8.0e-15
Identity = 52/167 (31.14%), Postives = 90/167 (53.89%), Query Frame = 1


Query: 25  IILRALVISSTLASTLLILSAKQSVLIFGIPFEARYTYSSAFKFFAFANAISSAFCFLSA 84
           ++LR     + LA+ ++++++++      I  EA+YT  +AFK+F  ANA+ S + FL  
Sbjct: 11  LVLRLAAFGAALAALIVMITSRERASFLAISLEAKYTDMAAFKYFVIANAVVSVYSFL-- 70

Query: 85  CFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCSAATAIGYIGKYGNSYTGW 144
             LF+ +  L            +    + DL++ +L+ S  SAA A+  +GK GN+  GW
Sbjct: 71  -VLFLPKESLL-----------WKFVVVLDLVMTMLLTSSLSAALAVAQVGKKGNANAGW 130

Query: 145 SPICDHFGKFCNRVTTSLAISYFAVL--CLLILIILSATANPSLTSR 190
            PIC    KFC+++T +L   + A++   LL+L  L A  +P L  +
Sbjct: 131 LPICGQVPKFCDQITGALIAGFVALVLYVLLLLYSLHAVVDPFLLQK 163

[Close]

BLAST of Lsi06G016690 vs. TAIR10
Match: AT5G15290.1 (AT5G15290.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 52/161 (32.30%), Postives = 85/161 (52.80%), Query Frame = 1


Query: 24  QIILRALVISSTLASTLLILSAKQSVLIFG--IPFEARYTYSSAFKFFAFANAISSAFCF 83
           + ILR +   +T+ S +L+ +  +++  F   I F+A Y    A  FF  ANA+ S +  
Sbjct: 29  EFILRIVAFFNTIGSAILMGTTHETLPFFTQFIRFQAEYNDLPALTFFVVANAVVSGYLI 88

Query: 84  LSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCSAATAIGYIGKYGNSY 143
           LS    F+   +  + N          +  + D+ ++ L+ SG S+A AI Y+   GN+ 
Sbjct: 89  LSLTLAFVHIVKRKTQNTR-------ILLIILDVAMLGLLTSGASSAAAIVYLAHNGNNK 148

Query: 144 TGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSATA 183
           T W  IC  F  FC R++ SL  S+ A++ L++LI+LSA A
Sbjct: 149 TNWFAICQQFNSFCERISGSLIGSFIAIVLLILLILLSAIA 182

[Close]

BLAST of Lsi06G016690 vs. TAIR10
Match: AT4G15620.1 (AT4G15620.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = 1


Query: 24  QIILRALVISSTLASTLLILSAKQSVLI----------FGIPFEARYTYSSAFKFFAFAN 83
           ++ +R L +  T+A+  ++  AKQ+ ++            I   A+ +Y SAF +    N
Sbjct: 28  ELTMRVLALILTMAAATVLGVAKQTKVVSIKLIPTLPPLDITTTAKASYLSAFVYNISVN 87

Query: 84  AISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCSAATAIGY 143
           AI+  +  +S   L ISR + +         +   +  L DL+++ L+ SG  AA+AIG 
Sbjct: 88  AIACGYTAISIAILMISRGRRSK--------KLLMVVLLGDLVMVALLFSGTGAASAIGL 147

Query: 144 IGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSATANP 185
           +G +GN +  W  +C  FGKFC+R   SL ++  A +  + L++L A   P
Sbjct: 148 MGLHGNKHVMWKKVCGVFGKFCHRAAPSLPLTLLAAVVFMFLVVLDAIKLP 190

[Close]

BLAST of Lsi06G016690 vs. TAIR10
Match: AT1G03700.1 (AT1G03700.1 Uncharacterised protein family (UPF0497))

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-12
Identity = 45/155 (29.03%), Postives = 82/155 (52.90%), Query Frame = 1


Query: 25  IILRALVISSTLASTLLILSAKQSVLIFGIPFEARYTYSSAFKFFAFANAISSAFCFLSA 84
           ++LR     + L + + ++++++    F I   A+Y+  +AFK+F  ANAI + + FL  
Sbjct: 11  LVLRFAAFCAALGAVIAMITSRERSSFFVISLVAKYSDLAAFKYFVIANAIVTVYSFL-- 70

Query: 85  CFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLLVLSGCSAATAIGYIGKYGNSYTGW 144
             LF+ +  L            +    + DL++ +L+ S  SAA A+  +GK GN+  GW
Sbjct: 71  -VLFLPKESLL-----------WKFVVVLDLMVTMLLTSSLSAAVAVAQVGKRGNANAGW 130

Query: 145 SPICDHFGKFCNRVTTSLAISYFAVLCLLILIILS 180
            PIC    +FC+++T +L     A++  + L+I S
Sbjct: 131 LPICGQVPRFCDQITGALIAGLVALVLYVFLLIFS 151

[Close]

BLAST of Lsi06G016690 vs. NCBI nr
Match: gi|659128806|ref|XP_008464379.1| (PREDICTED: CASP-like protein POPTRDRAFT_823430 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 1.0e-51
Identity = 123/185 (66.49%), Postives = 146/185 (78.92%), Query Frame = 1


Query: 3   DDME-ESQPKSNSHS----SSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFE 62
           +DME ES+  S+ H     ++LHL SQIILR LVISSTLA+T +IL+AKQSVL+FGIPF+
Sbjct: 7   NDMELESKSCSHRHDQPTITNLHLCSQIILRVLVISSTLAATWIILTAKQSVLVFGIPFD 66

Query: 63  ARYTYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFF---LHD 122
           ARY YSSAF+FFAFANAI+SAFCFLS CFL  S  + +S         N+YI F   LHD
Sbjct: 67  ARYNYSSAFEFFAFANAIASAFCFLSLCFLIFSSTRPSSSTPP-----NFYILFFFRLHD 126

Query: 123 LLIMLLVLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLI 180
           LL+M LVLSGCSAATAIGY+GKYGN++ GWSPIC+HF  FCNRVT S+AISY +V+CLLI
Sbjct: 127 LLMMGLVLSGCSAATAIGYVGKYGNTHAGWSPICNHFPSFCNRVTASIAISYLSVICLLI 186

[Close]

BLAST of Lsi06G016690 vs. NCBI nr
Match: gi|449440951|ref|XP_004138247.1| (PREDICTED: CASP-like protein 1F2 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 3.2e-50
Identity = 120/183 (65.57%), Postives = 147/183 (80.33%), Query Frame = 1


Query: 2   ADDMEESQPKSNSHSSSLHL-YSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARY 61
           +DD +   P +    ++LHL YSQIILR L I+STLA+T +IL+AKQSVLIFGIPF+ARY
Sbjct: 21  SDDHDHDHPTA---ITNLHLCYSQIILRVLAIASTLAATWIILTAKQSVLIFGIPFDARY 80

Query: 62  TYSSAFKFFAFANAISSAFCFLSACFL-FISRRQLASGNNHGTINRNYYIFF---LHDLL 121
             SSAF+FFAFANAI+SAFCFLS CFL F+S R     +++ +   N+YIFF   LHDLL
Sbjct: 81  NDSSAFQFFAFANAIASAFCFLSLCFLIFLSTRP----SSNTSTPLNFYIFFFFRLHDLL 140

Query: 122 IMLLVLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILI 180
           +M LVLSGCSAATAIG++GKYGN++TGWSPIC+HF  FCNRVT S+AISYF+V+CLLIL 
Sbjct: 141 MMGLVLSGCSAATAIGFVGKYGNTHTGWSPICNHFPSFCNRVTASIAISYFSVICLLILT 196

[Close]

BLAST of Lsi06G016690 vs. NCBI nr
Match: gi|641825226|gb|KDO44503.1| (hypothetical protein CISIN_1g039472mg, partial [Citrus sinensis])

HSP 1 Score: 165.6 bits (418), Expect = 8.3e-38
Identity = 95/187 (50.80%), Postives = 127/187 (67.91%), Query Frame = 1


Query: 4   DMEESQ----PKSNSHSSSLHLY-----SQIILRALVISSTLASTLLILSAKQSVLIFGI 63
           +ME SQ    P+S  H   L        +QI LR L I++ LA+T +IL++KQ ++IFGI
Sbjct: 41  NMESSQAIKFPQSQPHHQPLKYQKRFHVAQICLRILAIATALAATWVILTSKQHLVIFGI 100

Query: 64  PFEARYTYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHD 123
           PF+ARY+YSSAFKFFAFAN  +SAF  LS  +L I             +  NY++ FLHD
Sbjct: 101 PFDARYSYSSAFKFFAFANVAASAFSLLSLLYLLI-------------VPANYFLLFLHD 160

Query: 124 LLIMLLVLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLI 182
           L  M L+L+GC+AATA+GYIG+YGN + GW  IC+ FGKFCN+VT S+ +SY + LCLL+
Sbjct: 161 LFTMSLLLAGCAAATAVGYIGRYGNEHIGWMAICEQFGKFCNKVTASVILSYLSFLCLLV 214

[Close]

BLAST of Lsi06G016690 vs. NCBI nr
Match: gi|568863485|ref|XP_006485175.1| (PREDICTED: CASP-like protein 1F2 [Citrus sinensis])

HSP 1 Score: 165.6 bits (418), Expect = 8.3e-38
Identity = 95/186 (51.08%), Postives = 127/186 (68.28%), Query Frame = 1


Query: 5   MEESQ----PKSNSHSSSLHLY-----SQIILRALVISSTLASTLLILSAKQSVLIFGIP 64
           ME SQ    P+S  H   L        +QI LR L I++ LA+T +IL++KQ ++IFGIP
Sbjct: 1   MESSQAIKFPQSQPHHQPLKYQKRFHVAQICLRILAIATALAATWVILTSKQHLVIFGIP 60

Query: 65  FEARYTYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDL 124
           F+ARY+YSSAFKFFAFAN  +SAF  LS  +L I             +  +Y++ FLHDL
Sbjct: 61  FDARYSYSSAFKFFAFANVAASAFSLLSLLYLLI-------------VPASYFLLFLHDL 120

Query: 125 LIMLLVLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLIL 182
             M L+L+GC+AATA+GYIG+YGN + GW  IC+ FGKFCN+VT S+ +SYF+ LCLL+L
Sbjct: 121 FTMSLLLAGCAAATAVGYIGRYGNEHIGWMAICEQFGKFCNKVTASVMLSYFSFLCLLVL 173

[Close]

BLAST of Lsi06G016690 vs. NCBI nr
Match: gi|657965098|ref|XP_008374192.1| (PREDICTED: CASP-like protein POPTRDRAFT_823430 [Malus domestica])

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 90/181 (49.72%), Postives = 126/181 (69.61%), Query Frame = 1


Query: 1   MADDMEESQPKSNSHSSSLHLYSQIILRALVISSTLASTLLILSAKQSVLIFGIPFEARY 60
           MA    + Q      +  + L  QI +R + +++TLA+T ++++ KQS  I GI F+ARY
Sbjct: 1   MASTDSKFQQNPPLKTQKIFLGVQIFMRTVTMTATLAATWVMVTNKQSSQIIGIEFDARY 60

Query: 61  TYSSAFKFFAFANAISSAFCFLSACFLFISRRQLASGNNHGTINRNYYIFFLHDLLIMLL 120
            YS  FKFFA+ANA+ SAFC LS   LF+  R       HG+   NY+I FLHDL+++ L
Sbjct: 61  YYSPTFKFFAYANAVVSAFCLLSLFLLFLIHR-------HGSNPTNYFILFLHDLVMLCL 120

Query: 121 VLSGCSAATAIGYIGKYGNSYTGWSPICDHFGKFCNRVTTSLAISYFAVLCLLILIILSA 180
           +++GCSAATAIGY+G+YGNS++GW+PICDHFGKFC R T S+ +SY +++ LL+L I SA
Sbjct: 121 LMAGCSAATAIGYVGQYGNSHSGWAPICDHFGKFCKRGTDSVVLSYLSLVFLLMLTISSA 174

Query: 181 T 182
           T
Sbjct: 181 T 174

The following BLAST results are available for this feature:

BLAST of Lsi06G016690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CSPL3_POPTR	4.5e-36	48.07	CASP-like protein 1F2 OS=Populus trichocarpa GN=POPTRDRAFT_823430 PE=3 SV=1	[more]
CSPL8_RICCO	1.0e-32	48.31	CASP-like protein 1F1 OS=Ricinus communis GN=RCOM_1504680 PE=2 SV=1	[more]
CSPLH_POPTR	4.0e-32	47.59	CASP-like protein 1F1 OS=Populus trichocarpa GN=POPTRDRAFT_824792 PE=2 SV=1	[more]
CSPL4_VITVI	2.8e-30	44.25	CASP-like protein 1F1 OS=Vitis vinifera GN=VIT_17s0000g00560 PE=2 SV=2	[more]
CSPLA_RICCO	1.0e-27	39.88	CASP-like protein 1F2 OS=Ricinus communis GN=RCOM_1446020 PE=2 SV=1	[more]

BLAST of Lsi06G016690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR45_CUCSA	2.3e-50	65.57	CASP-like protein OS=Cucumis sativus GN=Csa_1G000725 PE=3 SV=1	[more]
A0A067DNP5_CITSI	5.8e-38	50.80	CASP-like protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039472mg PE=3 SV=1	[more]
V4TAA7_9ROSI	2.9e-37	50.54	CASP-like protein OS=Citrus clementina GN=CICLE_v10032880mg PE=3 SV=1	[more]
W9QUY0_9ROSA	4.9e-37	51.93	CASP-like protein OS=Morus notabilis GN=L484_008838 PE=3 SV=1	[more]
A0A061FZU4_THECC	6.4e-37	50.56	CASP-like protein OS=Theobroma cacao GN=TCM_014723 PE=3 SV=1	[more]

BLAST of Lsi06G016690 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25040.1	7.5e-21	38.92	Uncharacterised protein family (UPF0497)	[more]
AT4G03540.1	8.0e-15	31.14	Uncharacterised protein family (UPF0497)	[more]
AT5G15290.1	2.6e-13	32.30	Uncharacterised protein family (UPF0497)	[more]
AT4G15620.1	2.8e-12	29.24	Uncharacterised protein family (UPF0497)	[more]
AT1G03700.1	6.3e-12	29.03	Uncharacterised protein family (UPF0497)	[more]

BLAST of Lsi06G016690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128806\|ref\|XP_008464379.1\|	1.0e-51	66.49	PREDICTED: CASP-like protein POPTRDRAFT_823430 [Cucumis melo]	[more]
gi\|449440951\|ref\|XP_004138247.1\|	3.2e-50	65.57	PREDICTED: CASP-like protein 1F2 [Cucumis sativus]	[more]
gi\|641825226\|gb\|KDO44503.1\|	8.3e-38	50.80	hypothetical protein CISIN_1g039472mg, partial [Citrus sinensis]	[more]
gi\|568863485\|ref\|XP_006485175.1\|	8.3e-38	51.08	PREDICTED: CASP-like protein 1F2 [Citrus sinensis]	[more]
gi\|657965098\|ref\|XP_008374192.1\|	2.4e-37	49.72	PREDICTED: CASP-like protein POPTRDRAFT_823430 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006702	CASP_dom
IPR006459	CASP/CASPL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G016690.1	Lsi06G016690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006459	Casparian strip membrane protein	TIGRFAMs	TIGR01569	TIGR01569	coord: 25..181 score: 1.2
IPR006702	Domain of unknown function DUF588	PFAM	PF04535	DUF588	coord: 23..171 score: 3.2
None	No IPR available	PANTHER	PTHR11615	NITRATE, FROMATE, IRON DEHYDROGENASE	coord: 21..180 score: 3.4
None	No IPR available	PANTHER	PTHR11615:SF157	SUBFAMILY NOT NAMED	coord: 21..180 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G016690	CSPI01G00230	Wild cucumber (PI 183967)	cpilsiB070
Lsi06G016690	Cucsa.157040	Cucumber (Gy14) v1	cgylsiB250
Lsi06G016690	CmaCh10G000330	Cucurbita maxima (Rimu)	cmalsiB072
Lsi06G016690	CmoCh10G000290	Cucurbita moschata (Rifu)	cmolsiB058
Lsi06G016690	Cla019308	Watermelon (97103) v1	lsiwmB414
Lsi06G016690	MELO3C026176	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G016690	ClCG06G018210	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G016690	MELO3C026176.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G016690	Cla97C06G127980	Watermelon (97103) v2	lsiwmbB374
Lsi06G016690	Cp4.1LG18g09260	Cucurbita pepo (Zucchini)	cpelsiB298
Lsi06G016690	CsGy1G000230	Cucumber (Gy14) v2	cgyblsiB067
Lsi06G016690	CsaV3_1G000220	Cucumber (Chinese Long) v3	cuclsiB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G016690	Cucurbita maxima (Rimu)	cmalsiB135
Lsi06G016690	Cucurbita maxima (Rimu)	cmalsiB144
Lsi06G016690	Cucurbita maxima (Rimu)	cmalsiB219
Lsi06G016690	Cucurbita maxima (Rimu)	cmalsiB359
Lsi06G016690	Cucurbita maxima (Rimu)	cmalsiB392
Lsi06G016690	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G016690	Cucurbita moschata (Rifu)	cmolsiB133
Lsi06G016690	Cucurbita moschata (Rifu)	cmolsiB207
Lsi06G016690	Cucurbita moschata (Rifu)	cmolsiB376
Lsi06G016690	Cucurbita pepo (Zucchini)	cpelsiB433
Lsi06G016690	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G016690	Cucurbita pepo (Zucchini)	cpelsiB569
Lsi06G016690	Wild cucumber (PI 183967)	cpilsiB068
Lsi06G016690	Wild cucumber (PI 183967)	cpilsiB224
Lsi06G016690	Cucumber (Chinese Long) v2	culsiB067
Lsi06G016690	Cucumber (Chinese Long) v2	culsiB070
Lsi06G016690	Cucumber (Chinese Long) v2	culsiB225
Lsi06G016690	Melon (DHL92) v3.5.1	lsimeB392
Lsi06G016690	Watermelon (Charleston Gray)	lsiwcgB363
Lsi06G016690	Watermelon (97103) v1	lsiwmB394
Lsi06G016690	Cucumber (Gy14) v2	cgyblsiB064
Lsi06G016690	Cucumber (Gy14) v2	cgyblsiB214
Lsi06G016690	Melon (DHL92) v3.6.1	lsimedB414
Lsi06G016690	Silver-seed gourd	carlsiB331
Lsi06G016690	Silver-seed gourd	carlsiB554
Lsi06G016690	Cucumber (Chinese Long) v3	cuclsiB077
Lsi06G016690	Cucumber (Chinese Long) v3	cuclsiB247
Lsi06G016690	Watermelon (97103) v2	lsiwmbB364
Lsi06G016690	Wax gourd	lsiwgoB491
Lsi06G016690	Wax gourd	lsiwgoB525
Lsi06G016690	Bottle gourd (USVL1VR-Ls)	lsilsiB111