Lsi06G015180 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G015180
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative
Location	chr06 : 25603757 .. 25604005 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGAAACGGCTCTTACGATTGGGCGGACCAGTGGGACTACAACGACTCGACGGACATAGTCACAGAGAACAAGAAGAAGAGCGGCGGCGGAAACAGTACGGCCAAATACAAGCAGAAGGTCGGCGAAGGGCTTGGTAAGACCAAAGCTGTGGCCTCTAATGGCGTCAAAAAGGTTAAAGAAGGAACCTCTCTTGGTTTCCAATGGATCAAAGATAAATATAATAAAACCGCTCATAAGAAGTAG

mRNA sequence

ATGGCTGGAAACGGCTCTTACGATTGGGCGGACCAGTGGGACTACAACGACTCGACGGACATAGTCACAGAGAACAAGAAGAAGAGCGGCGGCGGAAACAGTACGGCCAAATACAAGCAGAAGGTCGGCGAAGGGCTTGGTAAGACCAAAGCTGTGGCCTCTAATGGCGTCAAAAAGGTTAAAGAAGGAACCTCTCTTGGTTTCCAATGGATCAAAGATAAATATAATAAAACCGCTCATAAGAAGTAG

Coding sequence (CDS)

ATGGCTGGAAACGGCTCTTACGATTGGGCGGACCAGTGGGACTACAACGACTCGACGGACATAGTCACAGAGAACAAGAAGAAGAGCGGCGGCGGAAACAGTACGGCCAAATACAAGCAGAAGGTCGGCGAAGGGCTTGGTAAGACCAAAGCTGTGGCCTCTAATGGCGTCAAAAAGGTTAAAGAAGGAACCTCTCTTGGTTTCCAATGGATCAAAGATAAATATAATAAAACCGCTCATAAGAAGTAG

Protein sequence

MAGNGSYDWADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVKKVKEGTSLGFQWIKDKYNKTAHKK

Homology

[Close]

BLAST of Lsi06G015180 vs. TrEMBL
Match: A0A0A0LUC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G005770 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.4e-33
Identity = 70/79 (88.61%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 4  NGSYDWADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVKKVKEG 63
          N SYDWADQWDY+DSTD+V++NKKK+GGGNS+AKYKQKVGEGLGKTK+VASNGVKKVKEG
Sbjct: 6  NTSYDWADQWDYSDSTDVVSDNKKKTGGGNSSAKYKQKVGEGLGKTKSVASNGVKKVKEG 65

Query: 64 TSLGFQWIKDKYNKTAHKK 83
          TSLGFQWIK+KYNKTAHKK
Sbjct: 66 TSLGFQWIKEKYNKTAHKK 84

[Close]

BLAST of Lsi06G015180 vs. TrEMBL
Match: A0A067KH50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11530 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-21
Identity = 58/83 (69.88%), Postives = 60/83 (72.29%), Query Frame = 1


Query: 1  MAGNGSY--DWADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVK 60
          M GNGSY   WADQWD         + KK SG  NSTAKYKQKVGEGLGKTKAVAS G+K
Sbjct: 1  MNGNGSYGTSWADQWDDGPDPVYNYQTKKSSGATNSTAKYKQKVGEGLGKTKAVASTGIK 60

Query: 61 KVKEGTSLGFQWIKDKYNKTAHK 82
          KVKEGT  GF WIKDKYNKT  K
Sbjct: 61 KVKEGTITGFHWIKDKYNKTKQK 83

[Close]

BLAST of Lsi06G015180 vs. TrEMBL
Match: B9I353_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07750g PE=4 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 8.1e-21
Identity = 58/84 (69.05%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1  MAGNGSYD--WADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVK 60
          MAGN SY+  WADQWDYN   D V  + K     NSTAKYKQKVGEGLGKTK VAS G K
Sbjct: 1  MAGNSSYETSWADQWDYNK--DPVVYHNKDGSSSNSTAKYKQKVGEGLGKTKQVASIGFK 60

Query: 61 KVKEGTSLGFQWIKDKYNKTAHKK 83
          KVKEGTS+GFQWIK+KY KT  K+
Sbjct: 61 KVKEGTSVGFQWIKEKYQKTTQKR 82

[Close]

BLAST of Lsi06G015180 vs. TrEMBL
Match: B9IEL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08200g PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.9e-20
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 1  MAGNGSYD--WADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVK 60
          M+GN S++  WADQWDYN    +   +K  S   +STAKYKQKVGEGLGKTK VAS G+K
Sbjct: 1  MSGNSSHETSWADQWDYNPDPAVYDHSKDSSS--DSTAKYKQKVGEGLGKTKQVASTGIK 60

Query: 61 KVKEGTSLGFQWIKDKYNKTAHK 82
          KVKEGTS+GF+WIKDKY KT  K
Sbjct: 61 KVKEGTSVGFRWIKDKYQKTTQK 81

[Close]

BLAST of Lsi06G015180 vs. TrEMBL
Match: A0A061FTS5_THECC (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative (Fragment) OS=Theobroma cacao GN=TCM_011974 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-19
Identity = 55/80 (68.75%), Postives = 61/80 (76.25%), Query Frame = 1


Query: 4   NGSY--DWADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVKKVK 63
           N SY   WADQWDY+D T + T   K +   +STAKYKQKVGEGLGKTKAVAS GVKKVK
Sbjct: 68  NSSYGTSWADQWDYSDPTPVSTTQNKNTK--SSTAKYKQKVGEGLGKTKAVASTGVKKVK 127

Query: 64  EGTSLGFQWIKDKYNKTAHK 82
           EGTSLG  WIK+KY+KT  K
Sbjct: 128 EGTSLGIHWIKEKYHKTTQK 145

[Close]

BLAST of Lsi06G015180 vs. TAIR10
Match: AT3G48180.1 (AT3G48180.1 unknown protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.7e-17
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 9  WADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVKKVKEGTSLGF 68
          WA+QWD N  +   T +  + GG +S  KYK+KVG GLGKTKA AS+G+KKVK GTSLG 
Sbjct: 6  WAEQWDSNQQSSGKTTHGGEGGGASS--KYKEKVGAGLGKTKAAASSGLKKVKIGTSLGL 65

Query: 69 QWIKDKYNKTAHK 82
           W+KDKYNKT  K
Sbjct: 66 NWVKDKYNKTTTK 76

[Close]

BLAST of Lsi06G015180 vs. TAIR10
Match: AT1G19020.1 (AT1G19020.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-15
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 4  NGSYDWADQWDYNDST-------DIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNG 63
          NG+  WADQWD +  +                SG  ++T KYK+K+G+GL KTKAVAS+G
Sbjct: 2  NGT-SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSG 61

Query: 64 VKKVKEGTSLGFQWIKDKYNKTAHKK 83
           KK+K G+++GF+W+KDKY+KT HK+
Sbjct: 62 FKKLKTGSAIGFRWVKDKYHKTTHKQ 86

[Close]

BLAST of Lsi06G015180 vs. NCBI nr
Match: gi|778655775|ref|XP_011659007.1| (PREDICTED: uncharacterized protein LOC105436119 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.7e-33
Identity = 70/79 (88.61%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 4  NGSYDWADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVKKVKEG 63
          N SYDWADQWDY+DSTD+V++NKKK+GGGNS+AKYKQKVGEGLGKTK+VASNGVKKVKEG
Sbjct: 6  NTSYDWADQWDYSDSTDVVSDNKKKTGGGNSSAKYKQKVGEGLGKTKSVASNGVKKVKEG 65

Query: 64 TSLGFQWIKDKYNKTAHKK 83
          TSLGFQWIK+KYNKTAHKK
Sbjct: 66 TSLGFQWIKEKYNKTAHKK 84

[Close]

BLAST of Lsi06G015180 vs. NCBI nr
Match: gi|659105591|ref|XP_008453134.1| (PREDICTED: uncharacterized protein LOC103493940 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 8.6e-32
Identity = 72/81 (88.89%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 4  NGSYDWADQWDYNDSTDIVTENKKK--SGGGNSTAKYKQKVGEGLGKTKAVASNGVKKVK 63
          N SYDWADQWDYNDS D+VT NKKK    GGNS+AKYKQKVGEGLGKTKAVASNGVKKVK
Sbjct: 6  NSSYDWADQWDYNDSADVVTNNKKKISGSGGNSSAKYKQKVGEGLGKTKAVASNGVKKVK 65

Query: 64 EGTSLGFQWIKDKYNKTAHKK 83
          EGTSLGFQWIKDKYNKTAHKK
Sbjct: 66 EGTSLGFQWIKDKYNKTAHKK 86

[Close]

BLAST of Lsi06G015180 vs. NCBI nr
Match: gi|802652583|ref|XP_012080143.1| (PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas])

HSP 1 Score: 108.2 bits (269), Expect = 6.8e-21
Identity = 58/83 (69.88%), Postives = 60/83 (72.29%), Query Frame = 1


Query: 1  MAGNGSY--DWADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVK 60
          M GNGSY   WADQWD         + KK SG  NSTAKYKQKVGEGLGKTKAVAS G+K
Sbjct: 1  MNGNGSYGTSWADQWDDGPDPVYNYQTKKSSGATNSTAKYKQKVGEGLGKTKAVASTGIK 60

Query: 61 KVKEGTSLGFQWIKDKYNKTAHK 82
          KVKEGT  GF WIKDKYNKT  K
Sbjct: 61 KVKEGTITGFHWIKDKYNKTKQK 83

[Close]

BLAST of Lsi06G015180 vs. NCBI nr
Match: gi|566197303|ref|XP_002318631.2| (hypothetical protein POPTR_0012s07750g [Populus trichocarpa])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 58/84 (69.05%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1  MAGNGSYD--WADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVK 60
          MAGN SY+  WADQWDYN   D V  + K     NSTAKYKQKVGEGLGKTK VAS G K
Sbjct: 1  MAGNSSYETSWADQWDYNK--DPVVYHNKDGSSSNSTAKYKQKVGEGLGKTKQVASIGFK 60

Query: 61 KVKEGTSLGFQWIKDKYNKTAHKK 83
          KVKEGTS+GFQWIK+KY KT  K+
Sbjct: 61 KVKEGTSVGFQWIKEKYQKTTQKR 82

[Close]

BLAST of Lsi06G015180 vs. NCBI nr
Match: gi|224135737|ref|XP_002322148.1| (hypothetical protein POPTR_0015s08200g [Populus trichocarpa])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 1  MAGNGSYD--WADQWDYNDSTDIVTENKKKSGGGNSTAKYKQKVGEGLGKTKAVASNGVK 60
          M+GN S++  WADQWDYN    +   +K  S   +STAKYKQKVGEGLGKTK VAS G+K
Sbjct: 1  MSGNSSHETSWADQWDYNPDPAVYDHSKDSSS--DSTAKYKQKVGEGLGKTKQVASTGIK 60

Query: 61 KVKEGTSLGFQWIKDKYNKTAHK 82
          KVKEGTS+GF+WIKDKY KT  K
Sbjct: 61 KVKEGTSVGFRWIKDKYQKTTQK 81

The following BLAST results are available for this feature:

BLAST of Lsi06G015180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G015180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUC7_CUCSA	5.4e-33	88.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G005770 PE=4 SV=1	[more]
A0A067KH50_JATCU	4.7e-21	69.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11530 PE=4 SV=1	[more]
B9I353_POPTR	8.1e-21	69.05	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07750g PE=4 SV=2	[more]
B9IEL5_POPTR	8.9e-20	65.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08200g PE=4 SV=1	[more]
A0A061FTS5_THECC	2.6e-19	68.75	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative (Fr...	[more]

BLAST of Lsi06G015180 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48180.1	3.7e-17	60.27	unknown protein	[more]
AT1G19020.1	2.7e-15	47.67	unknown protein	[more]

BLAST of Lsi06G015180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655775\|ref\|XP_011659007.1\|	7.7e-33	88.61	PREDICTED: uncharacterized protein LOC105436119 [Cucumis sativus]	[more]
gi\|659105591\|ref\|XP_008453134.1\|	8.6e-32	88.89	PREDICTED: uncharacterized protein LOC103493940 [Cucumis melo]	[more]
gi\|802652583\|ref\|XP_012080143.1\|	6.8e-21	69.88	PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]	[more]
gi\|566197303\|ref\|XP_002318631.2\|	1.2e-20	69.05	hypothetical protein POPTR_0012s07750g [Populus trichocarpa]	[more]
gi\|224135737\|ref\|XP_002322148.1\|	1.3e-19	65.06	hypothetical protein POPTR_0015s08200g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G015180.1	Lsi06G015180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33386	FAMILY NOT NAMED	coord: 4..82 score: 1.7
None	No IPR available	PANTHER	PTHR33386:SF4	SUBFAMILY NOT NAMED	coord: 4..82 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G015180	Csa1G005770	Cucumber (Chinese Long) v2	culsiB070
Lsi06G015180	CSPI01G01760	Wild cucumber (PI 183967)	cpilsiB070
Lsi06G015180	CmoCh10G001610	Cucurbita moschata (Rifu)	cmolsiB058
Lsi06G015180	Cla019161	Watermelon (97103) v1	lsiwmB414
Lsi06G015180	MELO3C017124	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G015180	ClCG06G016690	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G015180	MELO3C017124.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G015180	Cla97C06G126290	Watermelon (97103) v2	lsiwmbB374
Lsi06G015180	Bhi02G000302	Wax gourd	lsiwgoB501
Lsi06G015180	CsGy1G001780	Cucumber (Gy14) v2	cgyblsiB067
Lsi06G015180	Carg10373	Silver-seed gourd	carlsiB331
Lsi06G015180	CsaV3_1G001820	Cucumber (Chinese Long) v3	cuclsiB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G015180	Melon (DHL92) v3.5.1	lsimeB390
Lsi06G015180	Melon (DHL92) v3.5.1	lsimeB392
Lsi06G015180	Watermelon (Charleston Gray)	lsiwcgB353
Lsi06G015180	Watermelon (Charleston Gray)	lsiwcgB358
Lsi06G015180	Watermelon (Charleston Gray)	lsiwcgB368
Lsi06G015180	Watermelon (97103) v1	lsiwmB390
Lsi06G015180	Watermelon (97103) v1	lsiwmB403
Lsi06G015180	Watermelon (97103) v1	lsiwmB406
Lsi06G015180	Cucumber (Gy14) v2	cgyblsiB062
Lsi06G015180	Cucumber (Gy14) v2	cgyblsiB213
Lsi06G015180	Cucumber (Gy14) v2	cgyblsiB350
Lsi06G015180	Melon (DHL92) v3.6.1	lsimedB412
Lsi06G015180	Melon (DHL92) v3.6.1	lsimedB414
Lsi06G015180	Melon (DHL92) v3.6.1	lsimedB436
Lsi06G015180	Silver-seed gourd	carlsiB448
Lsi06G015180	Silver-seed gourd	carlsiB560
Lsi06G015180	Silver-seed gourd	carlsiB921
Lsi06G015180	Cucumber (Chinese Long) v3	cuclsiB075
Lsi06G015180	Cucumber (Chinese Long) v3	cuclsiB246
Lsi06G015180	Cucumber (Chinese Long) v3	cuclsiB407
Lsi06G015180	Watermelon (97103) v2	lsiwmbB357
Lsi06G015180	Watermelon (97103) v2	lsiwmbB370
Lsi06G015180	Wax gourd	lsiwgoB490
Lsi06G015180	Wax gourd	lsiwgoB494
Lsi06G015180	Bottle gourd (USVL1VR-Ls)	lsilsiB110
Lsi06G015180	Bottle gourd (USVL1VR-Ls)	lsilsiB133
Lsi06G015180	Bottle gourd (USVL1VR-Ls)	lsilsiB139
Lsi06G015180	Cucumber (Gy14) v1	cgylsiB120
Lsi06G015180	Cucumber (Gy14) v1	cgylsiB342
Lsi06G015180	Cucumber (Gy14) v1	cgylsiB467
Lsi06G015180	Cucumber (Gy14) v1	cgylsiB555
Lsi06G015180	Cucurbita maxima (Rimu)	cmalsiB072
Lsi06G015180	Cucurbita maxima (Rimu)	cmalsiB129
Lsi06G015180	Cucurbita maxima (Rimu)	cmalsiB220
Lsi06G015180	Cucurbita maxima (Rimu)	cmalsiB252
Lsi06G015180	Cucurbita maxima (Rimu)	cmalsiB390
Lsi06G015180	Cucurbita maxima (Rimu)	cmalsiB694
Lsi06G015180	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G015180	Cucurbita moschata (Rifu)	cmolsiB208
Lsi06G015180	Cucurbita moschata (Rifu)	cmolsiB240
Lsi06G015180	Cucurbita moschata (Rifu)	cmolsiB375
Lsi06G015180	Cucurbita moschata (Rifu)	cmolsiB687
Lsi06G015180	Cucurbita pepo (Zucchini)	cpelsiB042
Lsi06G015180	Cucurbita pepo (Zucchini)	cpelsiB298
Lsi06G015180	Cucurbita pepo (Zucchini)	cpelsiB431
Lsi06G015180	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G015180	Wild cucumber (PI 183967)	cpilsiB066
Lsi06G015180	Wild cucumber (PI 183967)	cpilsiB223
Lsi06G015180	Wild cucumber (PI 183967)	cpilsiB387
Lsi06G015180	Cucumber (Chinese Long) v2	culsiB064
Lsi06G015180	Cucumber (Chinese Long) v2	culsiB384