Lsi06G012950 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G012950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Pentatricopeptide repeat-containing protein
Location	chr06 : 23498959 .. 23505884 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTGACAATAGCTCCAGAGGAGGCAGCTTGGCGGAGCGTGACATTAGTGACACACCCGCTACCACTAAGAATGCAAACGCCACGCTGTTTCCTCCGAGCGAAGTTGGAGAGACTCTCATTGACATCGCAGCCAGAGCTAACCTCAATGGCATGAGCTCGAAGCGCATTAGCGCTGTCTCGGGTAACAATAATGGGTGGTTTTGGCTTGTTTTTGGACCCAGCTGGCCGCCCTCGAGGTCGACGGAGAGCTTGATCACTCTCTGCCGCCACAGAGATAGGCGACACGGCTTTAGGAGAAACAAGAGAAGGATCAAAGCAAGGTCTTTGTTGATGATTATTAGTGGCATTATTATTGCCACATTTTTCAGGTTCATGTTCAGAAACTACAGAAAGTTTAGATCCAAGAGAGTGAACTGCCATATCTTGATCACCTCCAGCCATTTGCATAATTAATATAATCAATCCTTTTTATTAGATATAATTGAGGGAAATTAGGGCAAAGGGAGATGAGGTTATAAAGTAGAAGGGGGAGATAAATATATATGAAGATTAATTTAGCAGAAAAAATGGTTTAAGGTTAGGAGGAGATTAAGTAAAACCAAACATTAAATAAAACAAATTAATGTTAAGGCTGTCTTAAGTATGTTTTGCTTTTCACTGCCTACCTCCTAACAGACTTGGTTCTTCATGTTAATTGTCTTAGCTCAAAAGATATTGATTTTCTAATGAAGTATTTCTAATATAATCTAGAAGCAAAATTATCACTATTATTAGAAATTCAGAAAATTAATAATAATAATTTCTTTTTGTAGTGGTTGGGTTTTTGATAGCAATTATATTTAATTATATGGTGTGGTAGCTTAGTGATCACAGTGATGTGATTCAGTTTGGTTAGGGTTTTAGTGTGTAGTGATCAACTATTTGAATAATTCTTTCTAATTTAAAGGGTTTAGTTACAAATACTAATTTAAATAATTGATTTTGAAGATCATAATTTAAGAATGAAGAATTATGTAAATATAATATTTTATTTGTCAGTTCAGCTTTAAGTTTGAAAATATTATTTTTCAAAGGGAAAAAATATTATTCTGTATGTGGTGGTAAGAGTGATAGTTGGTTCGGTTTTGTTAGTTTTGGGATCAACCAAGAATCAAATCAAACTTATTGGTTTTTATAAAGAAGAGATTTAAACCGATGTTCAATAAAGGACAAAATCAAAGGATTGGTTTTTATTAGGTTTGATTTATTATCGGTTTGGTTTCCTGTTTTGACATTTTCTTTTTTCTTTTCAAAATTTTAATTTTTATTTCTAATTTTGTTTTGAATTGGTATTTTTGTTAATTTTCAATTAAAATTGGGTCCATTTTTTTTTATAGATTGAAATTGGACTTTTTTTTTGTACTTTCTAAATAAATATCATACACACTCCATAATAATTAATCTTTTTTTAAACAATAAATATATATGCACCATAATAATTAAAACATTAAAAGATACCTAATATTGTTAGAGTTTATTTTTAAGAGTATACATGTCATCGTTTTGGTTAGGTTTTGATTAGTTTTTCCAATCAAAATCCCATCCGAACCAATATTTTTTTGTTTTCTCCAAATAAAAATCAATATGTCCAATTTTATATTAAAAAATCAAACCAAACCATGGATCGGTTTGAATTGGTTCGATTTTTTGTAACACTCCTATGTGGTAGTAGGCAGACATGGAAAGTTCGGTTGGAGGTTGCAATGCAATAGAAAAAGTTTTTATGTTATTTTTTTTAAATAAATAAATTTCTTAAAAGGACAACTGCAAATATAGCAATCAAATTCAAAGTATTAGCATATATAACAACATTTTTTAAAAATTGTAAATATAGCGAAGTCTATCCATGATAGACTTCTATTGTTGATAGACTTTTATAATAGACCATAAGAGTCTATCATCAATAGAATTCTATCATTAATAGATTTTGCTATATTTACAATTTTTTAAAAAAGTTACTATATATTTTGTTATTATTCCTAAAATTACTATTCATTGCAATTACCCTTTCTTAAAATATGGTGTTAGGCAAGTTAAAAAATAAAAAGGAGGACGGAGGAGGGATTTCTCTATTTATTTAAGTGTAATCTCACATATTTGCCTCAATTATTGTTTTTTATTTAAAAAGAAATTGTTATTGCTCTTTTTTAAATTCACCAACATAAAGGTTTCAACCTCCTCGACAAACACCAAGTTGGACAATAAAATTCAAACTTCGGATTTTTTAGTCGAAAGTGCATGTTTTATGTCAGTTGAGCTAACACTGCTCTATAAACACGTTTTTATTAAGTCAAACTACAGGTCTTTAAAATATTTTTTGAAGTATAGAAACAAATTCAAATCAACTAACTTTCATGATTGATTATTACCACAAGTGAGTTACGTTCATATATAAATAATAAATAATAACAATAATAAAGTAATCTATAGATAAATAATAATTTAGTCTATAAAATTCTATATTTGTGATTATTTGATTTTTAAACTTTAAAAAAAAATTAAATTAAATTCTAAACTCTAAACATTAAAAAAAAAAGAAAGTCAAAAGGCTAAGGGGTTGTGGGTTCAATCCATGGTGGCCACCTACTTAGAATTTAATATCCTATGGGTAAGTTGACACCCCGTCTGTTGTAGGGTCGGGTTGTCCAGTCAGATTAGTCGAGGTGCGCGTAAGCTGGCCTAGACACTCACGGACATAAAAGAAAAATTAAATTTAGTTTCTAACTTTCCAATTTTTTTTAAAATTTTATGAATTCAATCAATACAAAATTGGAAGTTTAGATCAATTACATCAAATAGATCAATTCATTAGAATAAAAAAAAATTAATTTATTGGAGATCTATTAATACAAAATTGAAAATTCAAAGATTAGATTGATAAAAAATTTAAACATTTATAACTTAAACTTTAAAAAATTATAAAATTTTGGACTCTTTTCAAATATAGAAAAATGAACCAAATTATTTACAAATATAAAATTTTTTTACAGTCTATCACTGATAGATCGTGATAGAATTCTATCGTGGTCTATCCCTGATAGACAGTCAAATTTTTATATATTTGTAAATAGTTTGATATTCTTTCTGTTTATAGTAATTTTCACTAAAATTTTTCTATATTTATAAATTGGTGTAATGTTATTATAGTGGAAAATATTGAGCTGAATCATCATCAGAAGCACAATCGGGAGTCGGTGTAATGCAAGCGCGCGGGAATTGCCGTTTCAGCCTGTTTCGCGGCAGCTCTTCACGATCGATTCAAACTGAATCCATCACCAACGAGCTTCGGGCTTCTTCAAATTCTTCTCCGTCGAAGAAAACATTGACCCAAAAACTCGAATCCAAAAACACTGACCCCAGAATTATCGATTCTGATATAGTCAGATGGAACAGGAAAATCACCGCCTACATGCGCAATGGCCAATGCGAATCCGCTCTAAGCGTTTTCAACGGTATGCCCCGTCGGAGTACTGTCACCTACAACGCCATGATATCTGGGTATTTGAGTAATTGTAAGTTTGATCGTGCACGGAAGGTGTTTGAGAAAATGCCCCATAGAGATTTGATATCTTGGAATGTGATGCTTAGTGGGTATGTGAAGAATGGGAACCTTAGTGCCGCTCGGGCTTTGTTTAATCAGATGCCTGAGAAGGATGTTGTTTCTTGGAATGCTATGTTGTCTGGGTATGCTCAGAATGGGTTAGTGGAGGAGGCTAGGAAAATATTTGATGAAATGTTGGATAAGAATGAAATTTCGTGGAATGGGTTGCTGGCGGCGTATGTTCAGAATGGGAGGATCGAGGATGCTAGAAGATTGTTTGATTCGAAAATGGATTGGGAGATAGTTTCTTGGAATTGTTTGATGGGTGGGTATGTGAAGAAAAGGAGGCTAGATGATGCGAGGAGTCTTTTTGACCGTATGCCAGTTAGAGATAATATCTCTTGGAATACAATGATTACAGGTTATGCTCAGAATGGGCTGCTTTCAGAAGCTTGGAGATTATTTGAAGAGTTACCAATTCGAGATGTGTTTGCTTGGACGGCTATGGTCTCTGGTTATGTGCAGAACGGGATGTTGGATGAAGCAACGAGAATTTTTGAAGAAATGCCTGAGAAGAATGAAGTTTCATGGAATGCGATGATTGCAGGGTATGTGCAGAGCCAGCAAATAGAAAAGGCAAGGGAATTATTTGATAAAATGCCTTCCCGGAATGTTGGTTCTTGGAATACAATGGTTACTGGGTATGCTCAGAGTGGCAATATTGATCAAGCCAGGATTTTGTTTGATGAGATGCCTCAACGTGATTGTATATCATGGGCAGCAATGATTTCCGGCTATGCCCAAAGCGGCCAGAGTGAAGAGGCTTTGCAACTTTTTATTAAGATGAAAAGAGATGGGGGAATATTGAATAGGTCTGCATTAACATGTGCTTTGAGCTCGTGTGCAGAGATTGCTGCTTTCGAGTTAGGGAAGCAGCTACATGGACGACTAGTTAAGGCAGGATTTCAAACCGGGTATTATGTGGGAAATGCACTTCTAGCCATGTATTGCAAATGTGGAAGTATAGAAGAGGCATTTGATGTATTTGAAGATATAACAGAGAAGGATATTGTCTCCTGGAACACAATGATTGCAGGTTATGCAAGGCATGGATTTGGTAAAAAGGCTTTAGCTGTTTTCGAGTCAATGAAGATGACAATCAAACCTGATGATGTCACACTGGTATGGAAGTTCTCTAAATTTGATAGATATTTTTTCCAATTTGATCTTCATGTTGTAACAGATAGAGCCGCACTTGCATCAAATTATTAATTTATTTCTGGGTATCAGGAAAAAAAAACTAGGATAGAAAAGGAAGAAATTAATGGGCATGCATATAGCAATTTCATTAGTACTCTTATGAAGGTTCCTGAAAGATTGATGAAACTTAATTTTAAAAGCTAAAGGAGGAAACTAAGTCTTTTAGTCTGCGTGCATCAACCTGTTAAGCATGCGGTTTTACAAATTTGTTTTTGCAGCCACTTGACCCCCTTAGCTTGCTGATTCTCTACCATAGCTACGACCTGCAGATAATTCTCGACCATGGCTGAATAAAACACTAAAACAACCATCGAATGAATTGTAGTCTCAACATTTTAGGTCAAAAAATTTTAGGAGATACCCGAGATTCCTTTTGTTCTCATGTTTTAACATGTAACTTTCTGATTTTTATCTAATTTCTACCTATTTTGTCAAACATTCTAGGTCGGTGTTCTATCTGCTTGCAGCCATACTGGCTTAGTCGATAAAGGCATGGAATATTTTAACTCAATGTATCAGAACTACGGTATAACAGCAAATTCCAAACATTACACTTGCATGATTGATCTACTTGGTCGTGCGGGTCGGCTAGATGAAGCTCTGAATTTAATGAAGAGCATGCCATTTTACCCAGACGCAGCAACTTGGGGTGCTTTACTTGGAGCAAGCCGAATTCATGGTGACACAAAATTAGGTGAGAAGGCTGCTGAGATGATATTTGAGATGGAGCCTGATAATTCAGGGATGTATGTTCTTCTCTCAAATTTATATGCAGCTTCAGGGAGATGGAGTGAAGTTCGTGAGATGAGATTGAAAATGAGAGACAAAGGAGTGAAGAAAGTTCCTGGATATAGTTGGGTTGAAGTACAAAACAAGACTCACATCTTCACTGTTGGAGATTGTTCACACCCAGAAGCAGAGAAGATATATGCTTATTTAGAAGAGTTGGATCTAAAATTGAAGAAGGATGGGTTTGTTTCTTCTACTAAATTGGTGTTACATGATGTGGAAGAGGAGGAGAAGGAACACATGCTCAAGTATCATAGTGAAAAATTAGCAGTTGCATTTGGGATTCTGTCTATACCATCTGGGAGACCAATCCGAGTGATTAAAAACTTGCGGGTGTGTGAAGACTGTCACAATGCCATCAAACGCATATCCAAGATTGCGCAAAGACAGATAATTGTGAGGGACTCTAATCGCTTTCACCACTTCAGTGAAGGTTCATGTTCTTGTGGAGATTATTGGTGACATTTCTTGGCATCATCTTTTTGCGGATATGGTCATTCAATTAAGATGATTAGAATTTGAAGAATTGACAAATCATTAAACCATGAACGGCTATACTGAAGGGGCTTCAAGGGTGAGATGAACTGGGATCAGAATTTTTTTAACATACATTCAATCTCTTAATGCTAGCGCCACATATTTGGAGGTAAAAAAAACGAGAAGGTTAGTGAATTATACTGAGAAAAGGACAGCTGCTGTAATGGTGCACATCCTGATGCTGCTGCTATTGGAAGATACCACTTCTACTAGATTGTGCTACTGCTATATTTGGTGATTCGGAAGGCATCATATTGCTATGGGAAATTGAAGTCTTCGGTTAATGATTTGCTTTCAGTTAGTTGAAGACTTCGGTTAATGATTTGCTTTCAGTTGACTCTACTATGATGTGGATCAGGGGTAGTAATAAGGATACTTGAGATTATGTTATTTACTATGTACTCTACAACTTGGGTGCCTTACACCTAGGCTCGCTGCAGCAGCACAAAAACTTGACGAACCAACGTTTTATTGGAGAACTGCTCAAAACCTATGAGTTGTTAGGGATACTGAAACTTTTGTAGGCCTCATCAGGTTAGCAAAACTCAGTAGAAATTTTGGGAAAGGGATGCGGTTGATCTCATTTCTATTTCCTACAATTCTTTGGATGAGTGGAAAAGAAATTGAAAAGGAATTGCCGCTTCGAGAAGTGCATATTGCTTGGAATTAGCAATGCTAGATTTTGTATTTTGGAATCTCTTTGGTACGCCAAGAGTCTCCTGTAAGTTAACTAAATGTTTATTAAGGATTGTCG

mRNA sequence

ATGGAGAGTGACAATAGCTCCAGAGGAGGCAGCTTGGCGGAGCGTGACATTAGTGACACACCCGCTACCACTAAGAATGCAAACGCCACGCTGTTTCCTCCGAGCGAAGTTGGAGAGACTCTCATTGACATCGCAGCCAGAGCTAACCTCAATGGCATGAGCTCGAAGCGCATTAGCGCTGTCTCGGGTAACAATAATGGGTGGTTTTGGCTTGTTTTTGGACCCAGCTGGCCGCCCTCGAGGTCGACGGAGAGCTTGATCACTCTCTGCCGCCACAGAGATAGGCGACACGGCTTTAGGAGAAACAAGAGAAGGATCAAAGCAAGCCTGTTTCGCGGCAGCTCTTCACGATCGATTCAAACTGAATCCATCACCAACGAGCTTCGGGCTTCTTCAAATTCTTCTCCGTCGAAGAAAACATTGACCCAAAAACTCGAATCCAAAAACACTGACCCCAGAATTATCGATTCTGATATAGTCAGATGGAACAGGAAAATCACCGCCTACATGCGCAATGGCCAATGCGAATCCGCTCTAAGCGTTTTCAACGGTATGCCCCGTCGGAGTACTGTCACCTACAACGCCATGATATCTGGGTATTTGAGTAATTGTAAGTTTGATCGTGCACGGAAGGTGTTTGAGAAAATGCCCCATAGAGATTTGATATCTTGGAATGTGATGCTTAGTGGGTATGTGAAGAATGGGAACCTTAGTGCCGCTCGGGCTTTGTTTAATCAGATGCCTGAGAAGGATGTTGTTTCTTGGAATGCTATGTTGTCTGGGTATGCTCAGAATGGGTTAGTGGAGGAGGCTAGGAAAATATTTGATGAAATGTTGGATAAGAATGAAATTTCGTGGAATGGGTTGCTGGCGGCGTATGTTCAGAATGGGAGGATCGAGGATGCTAGAAGATTGTTTGATTCGAAAATGGATTGGGAGATAGTTTCTTGGAATTGTTTGATGGGTGGGTATGTGAAGAAAAGGAGGCTAGATGATGCGAGGAGTCTTTTTGACCGTATGCCAGTTAGAGATAATATCTCTTGGAATACAATGATTACAGGTTATGCTCAGAATGGGCTGCTTTCAGAAGCTTGGAGATTATTTGAAGAGTTACCAATTCGAGATGTGTTTGCTTGGACGGCTATGGTCTCTGGTTATGTGCAGAACGGGATGTTGGATGAAGCAACGAGAATTTTTGAAGAAATGCCTGAGAAGAATGAAGTTTCATGGAATGCGATGATTGCAGGGTATGTGCAGAGCCAGCAAATAGAAAAGGCAAGGGAATTATTTGATAAAATGCCTTCCCGGAATGTTGGTTCTTGGAATACAATGGTTACTGGGTATGCTCAGAGTGGCAATATTGATCAAGCCAGGATTTTGTTTGATGAGATGCCTCAACGTGATTGTATATCATGGGCAGCAATGATTTCCGGCTATGCCCAAAGCGGCCAGAGTGAAGAGGCTTTGCAACTTTTTATTAAGATGAAAAGAGATGGGGGAATATTGAATAGGTCTGCATTAACATGTGCTTTGAGCTCGTGTGCAGAGATTGCTGCTTTCGAGTTAGGGAAGCAGCTACATGGACGACTAGTTAAGGCAGGATTTCAAACCGGGTATTATGTGGGAAATGCACTTCTAGCCATGTATTGCAAATGTGGAAGTATAGAAGAGGCATTTGATGTATTTGAAGATATAACAGAGAAGGATATTGTCTCCTGGAACACAATGATTGCAGGTTATGCAAGGCATGGATTTGGTAAAAAGGCTTTAGCTGTTTTCGAGTCAATGAAGATGACAATCAAACCTGATGATGTCACACTGGTCGGTGTTCTATCTGCTTGCAGCCATACTGGCTTAGTCGATAAAGGCATGGAATATTTTAACTCAATGTATCAGAACTACGGTATAACAGCAAATTCCAAACATTACACTTGCATGATTGATCTACTTGGTCGTGCGGGTCGGCTAGATGAAGCTCTGAATTTAATGAAGAGCATGCCATTTTACCCAGACGCAGCAACTTGGGGTGCTTTACTTGGAGCAAGCCGAATTCATGGTGACACAAAATTAGGTGAGAAGGCTGCTGAGATGATATTTGAGATGGAGCCTGATAATTCAGGGATGTATGTTCTTCTCTCAAATTTATATGCAGCTTCAGGGAGATGGAGTGAAGTTCGTGAGATGAGATTGAAAATGAGAGACAAAGGAGTGAAGAAAGTTCCTGGATATAGTTGGGTTGAAGTACAAAACAAGACTCACATCTTCACTGTTGGAGATTGTTCACACCCAGAAGCAGAGAAGATATATGCTTATTTAGAAGAGTTGGATCTAAAATTGAAGAAGGATGGGTTTGTTTCTTCTACTAAATTGGTGTTACATGATGTGGAAGAGGAGGAGAAGGAACACATGCTCAAGTATCATAGTGAAAAATTAGCAGTTGCATTTGGGATTCTGTCTATACCATCTGGGAGACCAATCCGAGTGATTAAAAACTTGCGGGTGTGTGAAGACTGTCACAATGCCATCAAACGCATATCCAAGATTGCGCAAAGACAGATAATTGTGAGGGACTCTAATCGCTTTCACCACTTCAGTGAAGGTTCATGTTCTTGTGGAGATTATTGGTGACATTTCTTGGCATCATCTTTTTGCGGATATGGTCATTCAATTAAGATGATTAGAATTTGAAGAATTGACAAATCATTAAACCATGAACGGCTATACTGAAGGGGCTTCAAGGGTGAGATGAACTGGGATCAGAATTTTTTTAACATACATTCAATCTCTTAATGCTAGCGCCACATATTTGGAGGTAAAAAAAACGAGAAGGTTAGTGAATTATACTGAGAAAAGGACAGCTGCTGTAATGGTGCACATCCTGATGCTGCTGCTATTGGAAGATACCACTTCTACTAGATTGTGCTACTGCTATATTTGGTGATTCGGAAGGCATCATATTGCTATGGGAAATTGAAGTCTTCGGTTAATGATTTGCTTTCAGTTAGTTGAAGACTTCGGTTAATGATTTGCTTTCAGTTGACTCTACTATGATGTGGATCAGGGGTAGTAATAAGGATACTTGAGATTATGTTATTTACTATGTACTCTACAACTTGGGTGCCTTACACCTAGGCTCGCTGCAGCAGCACAAAAACTTGACGAACCAACGTTTTATTGGAGAACTGCTCAAAACCTATGAGTTGTTAGGGATACTGAAACTTTTGTAGGCCTCATCAGGTTAGCAAAACTCAGTAGAAATTTTGGGAAAGGGATGCGGTTGATCTCATTTCTATTTCCTACAATTCTTTGGATGAGTGGAAAAGAAATTGAAAAGGAATTGCCGCTTCGAGAAGTGCATATTGCTTGGAATTAGCAATGCTAGATTTTGTATTTTGGAATCTCTTTGGTACGCCAAGAGTCTCCTGTAAGTTAACTAAATGTTTATTAAGGATTGTCG

Coding sequence (CDS)

ATGGAGAGTGACAATAGCTCCAGAGGAGGCAGCTTGGCGGAGCGTGACATTAGTGACACACCCGCTACCACTAAGAATGCAAACGCCACGCTGTTTCCTCCGAGCGAAGTTGGAGAGACTCTCATTGACATCGCAGCCAGAGCTAACCTCAATGGCATGAGCTCGAAGCGCATTAGCGCTGTCTCGGGTAACAATAATGGGTGGTTTTGGCTTGTTTTTGGACCCAGCTGGCCGCCCTCGAGGTCGACGGAGAGCTTGATCACTCTCTGCCGCCACAGAGATAGGCGACACGGCTTTAGGAGAAACAAGAGAAGGATCAAAGCAAGCCTGTTTCGCGGCAGCTCTTCACGATCGATTCAAACTGAATCCATCACCAACGAGCTTCGGGCTTCTTCAAATTCTTCTCCGTCGAAGAAAACATTGACCCAAAAACTCGAATCCAAAAACACTGACCCCAGAATTATCGATTCTGATATAGTCAGATGGAACAGGAAAATCACCGCCTACATGCGCAATGGCCAATGCGAATCCGCTCTAAGCGTTTTCAACGGTATGCCCCGTCGGAGTACTGTCACCTACAACGCCATGATATCTGGGTATTTGAGTAATTGTAAGTTTGATCGTGCACGGAAGGTGTTTGAGAAAATGCCCCATAGAGATTTGATATCTTGGAATGTGATGCTTAGTGGGTATGTGAAGAATGGGAACCTTAGTGCCGCTCGGGCTTTGTTTAATCAGATGCCTGAGAAGGATGTTGTTTCTTGGAATGCTATGTTGTCTGGGTATGCTCAGAATGGGTTAGTGGAGGAGGCTAGGAAAATATTTGATGAAATGTTGGATAAGAATGAAATTTCGTGGAATGGGTTGCTGGCGGCGTATGTTCAGAATGGGAGGATCGAGGATGCTAGAAGATTGTTTGATTCGAAAATGGATTGGGAGATAGTTTCTTGGAATTGTTTGATGGGTGGGTATGTGAAGAAAAGGAGGCTAGATGATGCGAGGAGTCTTTTTGACCGTATGCCAGTTAGAGATAATATCTCTTGGAATACAATGATTACAGGTTATGCTCAGAATGGGCTGCTTTCAGAAGCTTGGAGATTATTTGAAGAGTTACCAATTCGAGATGTGTTTGCTTGGACGGCTATGGTCTCTGGTTATGTGCAGAACGGGATGTTGGATGAAGCAACGAGAATTTTTGAAGAAATGCCTGAGAAGAATGAAGTTTCATGGAATGCGATGATTGCAGGGTATGTGCAGAGCCAGCAAATAGAAAAGGCAAGGGAATTATTTGATAAAATGCCTTCCCGGAATGTTGGTTCTTGGAATACAATGGTTACTGGGTATGCTCAGAGTGGCAATATTGATCAAGCCAGGATTTTGTTTGATGAGATGCCTCAACGTGATTGTATATCATGGGCAGCAATGATTTCCGGCTATGCCCAAAGCGGCCAGAGTGAAGAGGCTTTGCAACTTTTTATTAAGATGAAAAGAGATGGGGGAATATTGAATAGGTCTGCATTAACATGTGCTTTGAGCTCGTGTGCAGAGATTGCTGCTTTCGAGTTAGGGAAGCAGCTACATGGACGACTAGTTAAGGCAGGATTTCAAACCGGGTATTATGTGGGAAATGCACTTCTAGCCATGTATTGCAAATGTGGAAGTATAGAAGAGGCATTTGATGTATTTGAAGATATAACAGAGAAGGATATTGTCTCCTGGAACACAATGATTGCAGGTTATGCAAGGCATGGATTTGGTAAAAAGGCTTTAGCTGTTTTCGAGTCAATGAAGATGACAATCAAACCTGATGATGTCACACTGGTCGGTGTTCTATCTGCTTGCAGCCATACTGGCTTAGTCGATAAAGGCATGGAATATTTTAACTCAATGTATCAGAACTACGGTATAACAGCAAATTCCAAACATTACACTTGCATGATTGATCTACTTGGTCGTGCGGGTCGGCTAGATGAAGCTCTGAATTTAATGAAGAGCATGCCATTTTACCCAGACGCAGCAACTTGGGGTGCTTTACTTGGAGCAAGCCGAATTCATGGTGACACAAAATTAGGTGAGAAGGCTGCTGAGATGATATTTGAGATGGAGCCTGATAATTCAGGGATGTATGTTCTTCTCTCAAATTTATATGCAGCTTCAGGGAGATGGAGTGAAGTTCGTGAGATGAGATTGAAAATGAGAGACAAAGGAGTGAAGAAAGTTCCTGGATATAGTTGGGTTGAAGTACAAAACAAGACTCACATCTTCACTGTTGGAGATTGTTCACACCCAGAAGCAGAGAAGATATATGCTTATTTAGAAGAGTTGGATCTAAAATTGAAGAAGGATGGGTTTGTTTCTTCTACTAAATTGGTGTTACATGATGTGGAAGAGGAGGAGAAGGAACACATGCTCAAGTATCATAGTGAAAAATTAGCAGTTGCATTTGGGATTCTGTCTATACCATCTGGGAGACCAATCCGAGTGATTAAAAACTTGCGGGTGTGTGAAGACTGTCACAATGCCATCAAACGCATATCCAAGATTGCGCAAAGACAGATAATTGTGAGGGACTCTAATCGCTTTCACCACTTCAGTGAAGGTTCATGTTCTTGTGGAGATTATTGGTGA

Protein sequence

MESDNSSRGGSLAERDISDTPATTKNANATLFPPSEVGETLIDIAARANLNGMSSKRISAVSGNNNGWFWLVFGPSWPPSRSTESLITLCRHRDRRHGFRRNKRRIKASLFRGSSSRSIQTESITNELRASSNSSPSKKTLTQKLESKNTDPRIIDSDIVRWNRKITAYMRNGQCESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKIYAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW

Homology

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BLAST of Lsi06G012950 vs. Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 1062.4 bits (2746), Expect = 2.7e-309
Identity = 487/753 (64.67%), Postives = 620/753 (82.34%), Query Frame = 1


Query: 126 NELRASSNSSPSKKTLTQKLESKNTDPRII--DSDIVRWNRKITAYMRNGQCESALSVFN 185
           N    ++N    K+    +++   T P +   DSDI  WN  I++YMR G+C  AL VF 
Sbjct: 29  NNAHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFK 88

Query: 186 GMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARAL 245
            MPR S+V+YN MISGYL N +F+ ARK+F++MP RDL+SWNVM+ GYV+N NL  AR L
Sbjct: 89  RMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKAREL 148

Query: 246 FNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDAR 305
           F  MPE+DV SWN MLSGYAQNG V++AR +FD M +KN++SWN LL+AYVQN ++E+A 
Sbjct: 149 FEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEAC 208

Query: 306 RLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSE 365
            LF S+ +W +VSWNCL+GG+VKK+++ +AR  FD M VRD +SWNT+ITGYAQ+G + E
Sbjct: 209 MLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDE 268

Query: 366 AWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQI 425
           A +LF+E P++DVF WTAMVSGY+QN M++EA  +F++MPE+NEVSWNAM+AGYVQ +++
Sbjct: 269 ARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERM 328

Query: 426 EKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSG 485
           E A+ELFD MP RNV +WNTM+TGYAQ G I +A+ LFD+MP+RD +SWAAMI+GY+QSG
Sbjct: 329 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 388

Query: 486 QSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGN 545
            S EAL+LF++M+R+GG LNRS+ + ALS+CA++ A ELGKQLHGRLVK G++TG +VGN
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN 448

Query: 546 ALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESMKMT-IKP 605
           ALL MYCKCGSIEEA D+F+++  KDIVSWNTMIAGY+RHGFG+ AL  FESMK   +KP
Sbjct: 449 ALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKP 508

Query: 606 DDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNL 665
           DD T+V VLSACSHTGLVDKG +YF +M Q+YG+  NS+HY CM+DLLGRAG L++A NL
Sbjct: 509 DDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNL 568

Query: 666 MKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRW 725
           MK+MPF PDAA WG LLGASR+HG+T+L E AA+ IF MEP+NSGMYVLLSNLYA+SGRW
Sbjct: 569 MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRW 628

Query: 726 SEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKIYAYLEELDLKLKKD 785
            +V ++R++MRDKGVKKVPGYSW+E+QNKTH F+VGD  HPE ++I+A+LEELDL++KK 
Sbjct: 629 GDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKA 688

Query: 786 GFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAI 845
           G+VS T +VLHDVEEEEKE M++YHSE+LAVA+GI+ + SGRPIRVIKNLRVCEDCHNAI
Sbjct: 689 GYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAI 748

Query: 846 KRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           K +++I  R II+RD+NRFHHF +GSCSCGDYW
Sbjct: 749 KYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781

[Close]

BLAST of Lsi06G012950 vs. Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 666.4 bits (1718), Expect = 4.3e-190
Identity = 315/687 (45.85%), Postives = 454/687 (66.08%), Query Frame = 1


Query: 192 TYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARALFNQMPEKD 251
           T N  I+      K   ARK+F+    + + SWN M++GY  N     AR LF++MP+++
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78

Query: 252 VVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKMD 311
           ++SWN ++SGY +NG ++EARK+FD M ++N +SW  L+  YV NG+++ A  LF    +
Sbjct: 79  IISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE 138

Query: 312 WEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSEAWRLFEEL 371
              VSW  ++ G+++  R+DDA  L++ +P +DNI+  +MI G  + G + EA  +F+E+
Sbjct: 139 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 198

Query: 372 PIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFD 431
             R V  WT MV+GY QN  +D+A +IF+ MPEK EVSW +M+ GYVQ+ +IE A ELF+
Sbjct: 199 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFE 258

Query: 432 KMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQL 491
            MP + V + N M++G  Q G I +AR +FD M +R+  SW  +I  + ++G   EAL L
Sbjct: 259 VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDL 318

Query: 492 FIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYCK 551
           FI M++ G       L   LS CA +A+   GKQ+H +LV+  F    YV + L+ MY K
Sbjct: 319 FILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378

Query: 552 CGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESMKM--TIKPDDVTLVG 611
           CG + ++  +F+    KDI+ WN++I+GYA HG G++AL VF  M +  + KP++VT V 
Sbjct: 379 CGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438

Query: 612 VLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFY 671
            LSACS+ G+V++G++ + SM   +G+   + HY CM+D+LGRAGR +EA+ ++ SM   
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE 498

Query: 672 PDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMR 731
           PDAA WG+LLGA R H    + E  A+ + E+EP+NSG Y+LLSN+YA+ GRW++V E+R
Sbjct: 499 PDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELR 558

Query: 732 LKMRDKGVKKVPGYSWVEVQNKTHIFTVGDC-SHPEAEKIYAYLEELDLKLKKDGFVSST 791
             M+ + V+K PG SW EV+NK H FT G   SHPE E I   L+ELD  L++ G+    
Sbjct: 559 KLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDC 618

Query: 792 KLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKI 851
              LHDV+EEEK + LKYHSE+LAVA+ +L +  G PIRV+KNLRVC DCH AIK ISK+
Sbjct: 619 SYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKV 678

Query: 852 AQRQIIVRDSNRFHHFSEGSCSCGDYW 876
            +R+II+RD+NRFHHF  G CSC DYW
Sbjct: 679 KEREIILRDANRFHHFRNGECSCKDYW 705

[Close]

BLAST of Lsi06G012950 vs. Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 643.3 bits (1658), Expect = 3.9e-183
Identity = 303/673 (45.02%), Postives = 436/673 (64.78%), Query Frame = 1


Query: 205 KFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQ 264
           K + ARK F+ +  + + SWN ++SGY  NG    AR LF++M E++VVSWN ++SGY +
Sbjct: 32  KINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIK 91

Query: 265 NGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 324
           N ++ EAR +F+ M ++N +SW  ++  Y+Q G + +A  LF    +   VSW  + GG 
Sbjct: 92  NRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGL 151

Query: 325 VKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVS 384
           +   R+D AR L+D MPV+D ++   MI G  + G + EA  +F+E+  R+V  WT M++
Sbjct: 152 IDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMIT 211

Query: 385 GYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTM 444
           GY QN  +D A ++FE MPEK EVSW +M+ GY  S +IE A E F+ MP + V + N M
Sbjct: 212 GYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAM 271

Query: 445 VTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNR 504
           + G+ + G I +AR +FD M  RD  +W  MI  Y + G   EAL LF +M++ G   + 
Sbjct: 272 IVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSF 331

Query: 505 SALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFED 564
            +L   LS CA +A+ + G+Q+H  LV+  F    YV + L+ MY KCG + +A  VF+ 
Sbjct: 332 PSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDR 391

Query: 565 ITEKDIVSWNTMIAGYARHGFGKKALAVFESMKMT-IKPDDVTLVGVLSACSHTGLVDKG 624
            + KDI+ WN++I+GYA HG G++AL +F  M  +   P+ VTL+ +L+ACS+ G +++G
Sbjct: 392 FSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEG 451

Query: 625 MEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASR 684
           +E F SM   + +T   +HY+C +D+LGRAG++D+A+ L++SM   PDA  WGALLGA +
Sbjct: 452 LEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACK 511

Query: 685 IHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGY 744
            H    L E AA+ +FE EPDN+G YVLLS++ A+  +W +V  +R  MR   V K PG 
Sbjct: 512 THSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGC 571

Query: 745 SWVEVQNKTHIFTVGDC-SHPEAEKIYAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEH 804
           SW+EV  K H+FT G   +HPE   I   LE+ D  L++ G+      VLHDV+EEEK  
Sbjct: 572 SWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVD 631

Query: 805 MLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFH 864
            L  HSE+LAVA+G+L +P G PIRV+KNLRVC DCH AIK ISK+ +R+II+RD+NRFH
Sbjct: 632 SLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFH 691

Query: 865 HFSEGSCSCGDYW 876
           HF+ G CSC DYW
Sbjct: 692 HFNNGECSCRDYW 704

[Close]

BLAST of Lsi06G012950 vs. Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3)

HSP 1 Score: 572.8 bits (1475), Expect = 6.5e-162
Identity = 267/592 (45.10%), Postives = 391/592 (66.05%), Query Frame = 1


Query: 287 NGLLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKK-RRLDDARSLFDRMPVRDN 346
           N ++A  V++G I+ A R+F        ++WN L+ G  K   R+ +A  LFD +P  D 
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 347 ISWNTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEK 406
            S+N M++ Y +N    +A   F+ +P +D  +W  M++GY + G +++A  +F  M EK
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK 184

Query: 407 NEVSWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMP 466
           NEVSWNAMI+GY++   +EKA   F   P R V +W  M+TGY ++  ++ A  +F +M 
Sbjct: 185 NEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT 244

Query: 467 -QRDCISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGK 526
             ++ ++W AMISGY ++ + E+ L+LF  M  +G   N S L+ AL  C+E++A +LG+
Sbjct: 245 VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGR 304

Query: 527 QLHGRLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHG 586
           Q+H  + K+          +L++MYCKCG + +A+ +FE + +KD+V+WN MI+GYA+HG
Sbjct: 305 QIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHG 364

Query: 587 FGKKALAVFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHY 646
              KAL +F  M    I+PD +T V VL AC+H GLV+ GM YF SM ++Y +     HY
Sbjct: 365 NADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHY 424

Query: 647 TCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEP 706
           TCM+DLLGRAG+L+EAL L++SMPF P AA +G LLGA R+H + +L E AAE + ++  
Sbjct: 425 TCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNS 484

Query: 707 DNSGMYVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHP 766
            N+  YV L+N+YA+  RW +V  +R +M++  V KVPGYSW+E++NK H F   D  HP
Sbjct: 485 QNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHP 544

Query: 767 EAEKIYAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSG 826
           E + I+  L+EL+ K+K  G+    +  LH+VEEE+KE +L +HSEKLAVAFG + +P G
Sbjct: 545 ELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQG 604

Query: 827 RPIRVIKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
             I+V KNLR+C DCH AIK IS+I +R+IIVRD+ RFHHF +GSCSCGDYW
Sbjct: 605 SQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656

[Close]

BLAST of Lsi06G012950 vs. Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 1.5e-150
Identity = 292/747 (39.09%), Postives = 433/747 (57.97%), Query Frame = 1


Query: 154 IIDSDIVRWNRKITAYMRNGQCESALSVFNGMP--RRSTVTYNAMISGYLSNCKFDRARK 213
           I + D +     ++ Y  +G    A  VF   P   R TV YNAMI+G+  N     A  
Sbjct: 75  ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 214 VFEKMPHR----DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSW-----NAMLSGY 273
           +F KM H     D  ++  +L+G     +       F+    K    +     NA++S Y
Sbjct: 135 LFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVY 194

Query: 274 AQ----NGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKMD-WEIVSW 333
           ++      L+  ARK+FDE+L+K+E SW  ++  YV+NG  +    L +   D  ++V++
Sbjct: 195 SKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAY 254

Query: 334 NCLMGGYVKKRRLDDARSLFDRMPVR----DNISWNTMITGYAQNGLLSEAWRLFEELPI 393
           N ++ GYV +    +A  +  RM       D  ++ ++I   A  GLL    ++   +  
Sbjct: 255 NAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR 314

Query: 394 RDVFAW---TAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELF 453
           R+ F++    ++VS Y + G  DEA  IFE+MP K+ VSWNA+++GYV            
Sbjct: 315 REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV------------ 374

Query: 454 DKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQ 513
                               SG+I +A+++F EM +++ +SW  MISG A++G  EE L+
Sbjct: 375 -------------------SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLK 434

Query: 514 LFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYC 573
           LF  MKR+G      A + A+ SCA + A+  G+Q H +L+K GF +    GNAL+ MY 
Sbjct: 435 LFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYA 494

Query: 574 KCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESM-KMTIKPDDVTLVG 633
           KCG +EEA  VF  +   D VSWN +IA   +HG G +A+ V+E M K  I+PD +TL+ 
Sbjct: 495 KCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLT 554

Query: 634 VLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFY 693
           VL+ACSH GLVD+G +YF+SM   Y I   + HY  +IDLL R+G+  +A ++++S+PF 
Sbjct: 555 VLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFK 614

Query: 694 PDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMR 753
           P A  W ALL   R+HG+ +LG  AA+ +F + P++ G Y+LLSN++AA+G+W EV  +R
Sbjct: 615 PTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVR 674

Query: 754 LKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKIYAYLEELDLKLKKDGFVSSTK 813
             MRD+GVKK    SW+E++ + H F V D SHPEAE +Y YL++L  ++++ G+V  T 
Sbjct: 675 KLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTS 734

Query: 814 LVLHDVEEE-EKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKI 873
            VLHDVE +  KE ML  HSEK+AVAFG++ +P G  IR+ KNLR C DCHN  + +S +
Sbjct: 735 FVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWV 790

Query: 874 AQRQIIVRDSNRFHHFSEGSCSCGDYW 876
            QR II+RD  RFHHF  G CSCG++W
Sbjct: 795 VQRDIILRDRKRFHHFRNGECSCGNFW 790

[Close]

BLAST of Lsi06G012950 vs. TrEMBL
Match: A0A0A0LV20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024980 PE=4 SV=1)

HSP 1 Score: 1460.7 bits (3780), Expect = 0.0e+00
Identity = 716/767 (93.35%), Postives = 737/767 (96.09%), Query Frame = 1


Query: 109 SLFRGSSSRSIQTESITNELRASSNSSPSKKTLTQKLESKNTDPRIIDSDIVRWNRKITA 168
           SLF GSSSRSIQTESITN+LRASS SSPSKKT TQKLESKN+D  I+DSDIV+WNRKI+A
Sbjct: 10  SLFIGSSSRSIQTESITNKLRASSTSSPSKKTWTQKLESKNSDSTIVDSDIVKWNRKISA 69

Query: 169 YMRNGQCESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVML 228
           YMR GQCESALSVFNGM RRSTVTYNAMISGYLSN KFD ARKVFEKMP RDLISWNVML
Sbjct: 70  YMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVML 129

Query: 229 SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNG 288
           SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSG+AQNG VEEARKIFD+ML KNEISWNG
Sbjct: 130 SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG 189

Query: 289 LLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISW 348
           LL+AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV+K+RLDDARSLFDRMPVRD ISW
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISW 249

Query: 349 NTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEV 408
           N MITGYAQNGLLSEA RLFEELPIRDVFAWTAMVSG+VQNGMLDEATRIFEEMPEKNEV
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV 309

Query: 409 SWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRD 468
           SWNAMIAGYVQSQQIEKARELFD+MPSRN  SWNTMVTGYAQ GNIDQA+ILFDEMPQRD
Sbjct: 310 SWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRD 369

Query: 469 CISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHG 528
           CISWAAMISGYAQSGQSEEAL LFIKMKRDGGILNRSAL CALSSCAEIAA ELGKQLHG
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHG 429

Query: 529 RLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKK 588
           RLVKAGFQTGY  GNALLAMY KCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGK+
Sbjct: 430 RLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKE 489

Query: 589 ALAVFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMID 648
           ALA+FESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITAN+KHYTCMID
Sbjct: 490 ALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMID 549

Query: 649 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGM 708
           LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDT+LGEKAAE +FEMEPDNSGM
Sbjct: 550 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGM 609

Query: 709 YVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKI 768
           YVLLSNLYAASGRW EVREMR KMRDKGVKKVPGYSWVE+QNKTHIFTVGDCSHPEAE+I
Sbjct: 610 YVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERI 669

Query: 769 YAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRV 828
           YAYLEELDL+LKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIP GRPIRV
Sbjct: 670 YAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRV 729

Query: 829 IKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           IKNLRVCEDCHNAIK ISKI QRQIIVRDSNRFHHFSEGSCSCGDYW
Sbjct: 730 IKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776

[Close]

BLAST of Lsi06G012950 vs. TrEMBL
Match: W9SFH3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000356 PE=4 SV=1)

HSP 1 Score: 1172.1 bits (3031), Expect = 0.0e+00
Identity = 570/767 (74.32%), Postives = 661/767 (86.18%), Query Frame = 1


Query: 111 FRGSSSRSIQTESITNELRASSNSSPSKKTLTQKLE-SKNTDPRIIDSDIVRWNRKITAY 170
           F  S   S+QT++I  +L    N  PSKKTL +K    KN    I DSDIV+WN  IT++
Sbjct: 10  FHSSCFCSLQTQTINGKL---PNPIPSKKTLIEKHNPKKNKKSNIADSDIVQWNMDITSH 69

Query: 171 MRNGQCESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLS 230
           MRNG C++AL VFN M RRS V+YNAMISGYL+N +FD AR +FE+MP RDL+SWNVMLS
Sbjct: 70  MRNGHCKAALRVFNDMSRRSVVSYNAMISGYLANDRFDLARDMFERMPERDLVSWNVMLS 129

Query: 231 GYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGL 290
           GYV+N  L AAR LF++MPE+DVVSWN+MLSGYAQ G V+EA KIF+ M DKNEISWN L
Sbjct: 130 GYVRNRKLGAARMLFDRMPERDVVSWNSMLSGYAQYGYVDEAMKIFEMMPDKNEISWNSL 189

Query: 291 LAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWN 350
           L+AYVQNGRI+DARRLF+SK DWE+VSWNCLMGGYV+K+RL DAR LFD+MP+RD +SWN
Sbjct: 190 LSAYVQNGRIDDARRLFESKADWEVVSWNCLMGGYVRKKRLVDARKLFDQMPIRDAVSWN 249

Query: 351 TMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVS 410
           TMIT YAQN  L+E+ RLFEE PIRDVFAWTAM+SGYVQ+GMLDEA RIF+EMP KN VS
Sbjct: 250 TMITCYAQNSELAESRRLFEESPIRDVFAWTAMMSGYVQHGMLDEARRIFDEMPVKNPVS 309

Query: 411 WNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDC 470
           WNA+IAGYV+ ++++ ARELF+ MP RNV SWNTM+T YAQSG+I QAR +FD MPQRD 
Sbjct: 310 WNAIIAGYVRCKRMDIARELFEVMPCRNVSSWNTMLTAYAQSGDIAQARFIFDRMPQRDS 369

Query: 471 ISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGR 530
           ISWAA+I+GYAQ+G  EEAL+LF++MK++G  L RS  TCALS+CAEIAA ELGKQLHGR
Sbjct: 370 ISWAAIIAGYAQNGYGEEALRLFMEMKKEGERLTRSCYTCALSTCAEIAALELGKQLHGR 429

Query: 531 LVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKA 590
           LVKAGF+TG YVGNALL MY KCGSIEEA++VF+DI  KDIVSWNTMIAGYARHGFGK+A
Sbjct: 430 LVKAGFETGCYVGNALLVMYSKCGSIEEAYNVFKDIEVKDIVSWNTMIAGYARHGFGKEA 489

Query: 591 LAVFESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMID 650
           L +FESMK M I PDDVTLVGVLSACSHTGLV++G +YF SM Q+YGIT NSKHYTCMID
Sbjct: 490 LMIFESMKAMGIIPDDVTLVGVLSACSHTGLVERGKQYFYSMNQDYGITPNSKHYTCMID 549

Query: 651 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGM 710
           LLGRAG LDEA +LM++MPF PDAATWGALLGASRIHG+T+LGEKAA++IFE+EP+N+GM
Sbjct: 550 LLGRAGCLDEAQDLMRNMPFEPDAATWGALLGASRIHGNTELGEKAAKIIFELEPENAGM 609

Query: 711 YVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKI 770
           YVLLSNLYAASGRW++VR+MRLKMRD GVKKVPGYSWVEVQNK H F+VGD  HPE ++I
Sbjct: 610 YVLLSNLYAASGRWTDVRKMRLKMRDTGVKKVPGYSWVEVQNKVHTFSVGDSVHPEKDRI 669

Query: 771 YAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRV 830
           YA+LEELDLK+K++G+VSSTKLVLHDVEEEEKE+MLKYHSEKLAVAF ILS P GRPIRV
Sbjct: 670 YAFLEELDLKMKREGYVSSTKLVLHDVEEEEKENMLKYHSEKLAVAFAILSTPPGRPIRV 729

Query: 831 IKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           +KNLRVCEDCH+A K ISKI  R II+RDS RFHHFS GSCSCGDYW
Sbjct: 730 MKNLRVCEDCHSAFKIISKIVGRLIILRDSYRFHHFSGGSCSCGDYW 773

[Close]

BLAST of Lsi06G012950 vs. TrEMBL
Match: M5WCR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002162mg PE=4 SV=1)

HSP 1 Score: 1169.5 bits (3024), Expect = 0.0e+00
Identity = 555/707 (78.50%), Postives = 629/707 (88.97%), Query Frame = 1


Query: 170 MRNGQCESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLS 229
           MRNG+CE+AL VFN MPRRS V+YNAMISGYL+N KFD A+ +FEKMP RDL+SWNVMLS
Sbjct: 1   MRNGRCEAALRVFNVMPRRSPVSYNAMISGYLANGKFDLAKDMFEKMPERDLVSWNVMLS 60

Query: 230 GYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGL 289
           GYV+N +L AA ALF +MPEKDVVSWNAMLSGYAQNG V+EARK+F+ M +KNEISWNGL
Sbjct: 61  GYVRNRDLGAAHALFERMPEKDVVSWNAMLSGYAQNGYVDEARKVFERMPNKNEISWNGL 120

Query: 290 LAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWN 349
           LAAYVQNGRIEDARRLF+SK +WE VSWNCLMGG VK++RL  AR LFDRMPVRD +SWN
Sbjct: 121 LAAYVQNGRIEDARRLFESKANWEAVSWNCLMGGLVKQKRLVHARQLFDRMPVRDEVSWN 180

Query: 350 TMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVS 409
           TMITGYAQNG +SEA RLF E PIRDVFAWT+M+SGYVQNGMLDE  R+F+EMPEKN VS
Sbjct: 181 TMITGYAQNGEMSEARRLFGESPIRDVFAWTSMLSGYVQNGMLDEGRRMFDEMPEKNSVS 240

Query: 410 WNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDC 469
           WNAMIAGYVQ ++++ A +LF  MP RN  SWNT++TGYAQSG+ID AR +FD MP+RD 
Sbjct: 241 WNAMIAGYVQCKRMDMAMKLFGAMPFRNASSWNTILTGYAQSGDIDNARKIFDSMPRRDS 300

Query: 470 ISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGR 529
           ISWAA+I+GYAQ+G SEEAL LF++MKRDG  L RS+ TC LS+CAEIAA ELGKQLHGR
Sbjct: 301 ISWAAIIAGYAQNGYSEEALCLFVEMKRDGERLTRSSFTCTLSTCAEIAALELGKQLHGR 360

Query: 530 LVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKA 589
           + KAG++TG YVGNALL MYCKCGSIEEA+DVF+ I EKD+VSWNTMI GYARHGFG KA
Sbjct: 361 VTKAGYETGCYVGNALLVMYCKCGSIEEAYDVFQGIAEKDVVSWNTMIYGYARHGFGSKA 420

Query: 590 LAVFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMID 649
           L VFESMK   IKPDDVT+VGVLSACSHTGLVD+G EYF SM Q+YGITANSKHYTCMID
Sbjct: 421 LMVFESMKAAGIKPDDVTMVGVLSACSHTGLVDRGTEYFYSMNQDYGITANSKHYTCMID 480

Query: 650 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGM 709
           LLGRAGRL+EA NLM+ MPF PDAATWGALLGASRIHG+T+LGEKAA++IFEMEP+N+GM
Sbjct: 481 LLGRAGRLEEAQNLMRDMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPENAGM 540

Query: 710 YVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKI 769
           YVLLSNLYAASGRW EV +MRLKM+DKGV+KVPGYSWVEVQNK H F+VGD  HP+ +KI
Sbjct: 541 YVLLSNLYAASGRWGEVGKMRLKMKDKGVRKVPGYSWVEVQNKIHTFSVGDSIHPDKDKI 600

Query: 770 YAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRV 829
           YA+LEELDLK+K++G++SSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIP+GRPIRV
Sbjct: 601 YAFLEELDLKMKREGYISSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPAGRPIRV 660

Query: 830 IKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           IKNLRVC DCHNAIK ISKI  R II+RDS+RFHHFS G+CSCGDYW
Sbjct: 661 IKNLRVCGDCHNAIKYISKIVGRTIILRDSHRFHHFSGGNCSCGDYW 707

[Close]

BLAST of Lsi06G012950 vs. TrEMBL
Match: A0A0D2T8Y5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G289000 PE=4 SV=1)

HSP 1 Score: 1159.4 bits (2998), Expect = 0.0e+00
Identity = 550/750 (73.33%), Postives = 643/750 (85.73%), Query Frame = 1


Query: 127 ELRASSNSSPSKKTLTQKLESKNTDPRIIDSDIVRWNRKITAYMRNGQCESALSVFNGMP 186
           ELR + NS PSKKTLTQ+  +    P + DSDI +WN  I+ YMRN Q +SAL  FN MP
Sbjct: 21  ELRTNPNSYPSKKTLTQRRHNDKPRP-VGDSDIKQWNMAISYYMRNSQLDSALHFFNLMP 80

Query: 187 RRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARALFNQ 246
           RRS+V+YNAMISGYL N +FD AR +F++MP RDL+SWNVM+SG V+N N++AAR LF +
Sbjct: 81  RRSSVSYNAMISGYLMNGRFDLARNLFDEMPERDLVSWNVMISGCVRNNNVAAARELFEE 140

Query: 247 MPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLF 306
           MPE+DVVSWNAMLSGYAQNG ++EARKIFD M  KN ISWN LLA YVQNGR+E+A RLF
Sbjct: 141 MPERDVVSWNAMLSGYAQNGCIDEARKIFDRMPCKNSISWNALLATYVQNGRMEEACRLF 200

Query: 307 DSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSEAWR 366
           +SK+DW++VSWNCLMGG+VKK+ L DAR +FDR+P RD ISWNT+ITGYAQNG + EA R
Sbjct: 201 ESKLDWDLVSWNCLMGGFVKKKMLVDARRVFDRIPFRDKISWNTIITGYAQNGEIEEARR 260

Query: 367 LFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKA 426
           LF E P+RDVF WTAMVSG+VQNG++DEA   FE+MP+KN VSWNAMIAGYVQ ++++ A
Sbjct: 261 LFNESPVRDVFTWTAMVSGFVQNGLVDEARETFEQMPQKNAVSWNAMIAGYVQCKRMDMA 320

Query: 427 RELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSE 486
           R+LFDKMP R+V +WNTM+TGYAQSG I  AR  FD MP+ D +SWAAMI+GYAQSG SE
Sbjct: 321 RKLFDKMPFRDVTTWNTMITGYAQSGEIAHARDFFDRMPRHDPVSWAAMIAGYAQSGYSE 380

Query: 487 EALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALL 546
           EAL+LF+ MKRDG  LNRS+  CALS+CA IAA ELG QLHGRLVKAG+++G +VGNALL
Sbjct: 381 EALRLFVDMKRDGERLNRSSFACALSTCAHIAALELGMQLHGRLVKAGYESGSFVGNALL 440

Query: 547 AMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESMKMT-IKPDDV 606
            MYCKCG IEEA   FE+I EKDIVSWNTMIAGYARHGFGK+AL +FESMK   +KP+D 
Sbjct: 441 LMYCKCGGIEEACSAFEEIMEKDIVSWNTMIAGYARHGFGKEALKIFESMKAAGVKPNDT 500

Query: 607 TLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKS 666
           T+VGVLSACSH GLVD+GMEYF SM Q+YGITANS+HYTCM+DLLGRAGRLDEA  L+++
Sbjct: 501 TMVGVLSACSHAGLVDRGMEYFYSMNQDYGITANSRHYTCMVDLLGRAGRLDEAQKLIRN 560

Query: 667 MPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEV 726
           MPF PDAATWGALLGASRIHG+TKL E AAE+IFEMEP+N+GMYVLLSNLYAASGRW++V
Sbjct: 561 MPFEPDAATWGALLGASRIHGNTKLAEMAAELIFEMEPENAGMYVLLSNLYAASGRWADV 620

Query: 727 REMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKIYAYLEELDLKLKKDGFV 786
            +MRLKMRD GVKKVPG SW+EVQNK H F+VGD  HP+ +KIYAYLEELDLK+K++G+V
Sbjct: 621 SKMRLKMRDTGVKKVPGCSWLEVQNKIHTFSVGDSCHPDRDKIYAYLEELDLKMKREGYV 680

Query: 787 SSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRI 846
           SS KL+LHDV+EEEKEHMLKYHSEKLAVA+GILSIP+GRPIRV+KNLRVCEDCHNAIK I
Sbjct: 681 SSIKLILHDVDEEEKEHMLKYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKYI 740

Query: 847 SKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           SKI  R II+RDSNRFHHF EGSCSCGDYW
Sbjct: 741 SKIVGRLIILRDSNRFHHFREGSCSCGDYW 769

[Close]

BLAST of Lsi06G012950 vs. TrEMBL
Match: A0A061G2M0_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_012708 PE=4 SV=1)

HSP 1 Score: 1147.5 bits (2967), Expect = 0.0e+00
Identity = 549/762 (72.05%), Postives = 640/762 (83.99%), Query Frame = 1


Query: 115 SSRSIQTESITNELRASSNSSPSKKTLTQKLESKNTDPRIIDSDIVRWNRKITAYMRNGQ 174
           S R  Q  SI+ +L+   N  PSKK L QK  + N    ++DSDI +WN  I+ +MRN Q
Sbjct: 8   SHRCRQLHSIS-KLQPKPNHYPSKKALAQKKHNYNKPQPVVDSDIKQWNLAISTHMRNAQ 67

Query: 175 CESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLSGYVKN 234
            +SAL VFN MPRRS+V+YNAMISGYL N KF+ AR +F++MP RDL+SWNVM+SG V+N
Sbjct: 68  LDSALRVFNSMPRRSSVSYNAMISGYLMNDKFELARNLFDEMPERDLVSWNVMISGCVRN 127

Query: 235 GNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGLLAAYV 294
            N++AA+ LF QMPE+DVVSWNAMLSGYAQNG V++ARKIFD M  KN ISWN LLA YV
Sbjct: 128 NNVAAAKELFEQMPERDVVSWNAMLSGYAQNGCVDKARKIFDRMPTKNSISWNALLATYV 187

Query: 295 QNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWNTMITG 354
           QNGR+E+A  LF+SK DW++VSWNCLMGG+VK +R  DAR +FDR+P RD ISWNT+ITG
Sbjct: 188 QNGRMEEACTLFESKADWDLVSWNCLMGGFVKTKRFIDARRIFDRIPFRDKISWNTIITG 247

Query: 355 YAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMI 414
           YAQNG + EA RLF E P+RDVF WTAMVSGYVQNGM+D+A   FEEMPEKN VSWNAMI
Sbjct: 248 YAQNGEIEEARRLFHESPVRDVFTWTAMVSGYVQNGMVDKAREFFEEMPEKNAVSWNAMI 307

Query: 415 AGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAA 474
           AGYVQ ++++ AR+LFDKMP RNV S NT++TGYAQSG I  AR LFD MP+RD +SWAA
Sbjct: 308 AGYVQCKRMDMARKLFDKMPCRNVTSLNTIITGYAQSGEIAHARELFDRMPRRDPVSWAA 367

Query: 475 MISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAG 534
           MI+GYAQSG  EEAL LF++MKRDG  LNRS+  CALS+CA IAA E+GKQLHGRLVKAG
Sbjct: 368 MIAGYAQSGYDEEALCLFVEMKRDGERLNRSSFACALSTCAHIAALEMGKQLHGRLVKAG 427

Query: 535 FQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFE 594
           +++G +VGNALL MYCKCG IEEA   FE+I EKD+VSWNTMIAGYARHGFGK+AL VFE
Sbjct: 428 YESGSFVGNALLLMYCKCGGIEEACSAFEEIMEKDVVSWNTMIAGYARHGFGKEALKVFE 487

Query: 595 SMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRA 654
           SMK   +KPDD T+VGVLSACSH GLVD+G EYF  M Q+Y I ANS+HYTCM+DLLGRA
Sbjct: 488 SMKAAGVKPDDTTMVGVLSACSHAGLVDRGREYFYCMNQDYAIKANSRHYTCMVDLLGRA 547

Query: 655 GRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLS 714
           GRLDEAL L+++MPF PDAATWGALLGASRIHG+TKL E AA++IFEMEP+N+GMYVLLS
Sbjct: 548 GRLDEALKLIRNMPFEPDAATWGALLGASRIHGNTKLAEMAAQLIFEMEPENAGMYVLLS 607

Query: 715 NLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKIYAYLE 774
           NLYAASGRW++V  MRL+MRD GVKKVPG SW+EVQ+K H F+VGD  HP+ +KIYAYLE
Sbjct: 608 NLYAASGRWADVSRMRLQMRDTGVKKVPGCSWLEVQSKIHTFSVGDSCHPDRDKIYAYLE 667

Query: 775 ELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLR 834
           ELDLK+K++G+VSST L+LHDV+ EEKEHMLKYHSEKLAVAFGILSIP+GRPIRVIKNLR
Sbjct: 668 ELDLKMKQEGYVSSTNLILHDVDNEEKEHMLKYHSEKLAVAFGILSIPAGRPIRVIKNLR 727

Query: 835 VCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           VCEDCHNAIK ISKI  R II+RDSNRFHHF EGSCSCGDYW
Sbjct: 728 VCEDCHNAIKYISKIVGRLIILRDSNRFHHFREGSCSCGDYW 768

[Close]

BLAST of Lsi06G012950 vs. TAIR10
Match: AT4G02750.1 (AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 1062.4 bits (2746), Expect = 1.5e-310
Identity = 487/753 (64.67%), Postives = 620/753 (82.34%), Query Frame = 1


Query: 126 NELRASSNSSPSKKTLTQKLESKNTDPRII--DSDIVRWNRKITAYMRNGQCESALSVFN 185
           N    ++N    K+    +++   T P +   DSDI  WN  I++YMR G+C  AL VF 
Sbjct: 29  NNAHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFK 88

Query: 186 GMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARAL 245
            MPR S+V+YN MISGYL N +F+ ARK+F++MP RDL+SWNVM+ GYV+N NL  AR L
Sbjct: 89  RMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKAREL 148

Query: 246 FNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDAR 305
           F  MPE+DV SWN MLSGYAQNG V++AR +FD M +KN++SWN LL+AYVQN ++E+A 
Sbjct: 149 FEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEAC 208

Query: 306 RLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSE 365
            LF S+ +W +VSWNCL+GG+VKK+++ +AR  FD M VRD +SWNT+ITGYAQ+G + E
Sbjct: 209 MLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDE 268

Query: 366 AWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQI 425
           A +LF+E P++DVF WTAMVSGY+QN M++EA  +F++MPE+NEVSWNAM+AGYVQ +++
Sbjct: 269 ARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERM 328

Query: 426 EKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSG 485
           E A+ELFD MP RNV +WNTM+TGYAQ G I +A+ LFD+MP+RD +SWAAMI+GY+QSG
Sbjct: 329 EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 388

Query: 486 QSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGN 545
            S EAL+LF++M+R+GG LNRS+ + ALS+CA++ A ELGKQLHGRLVK G++TG +VGN
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN 448

Query: 546 ALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESMKMT-IKP 605
           ALL MYCKCGSIEEA D+F+++  KDIVSWNTMIAGY+RHGFG+ AL  FESMK   +KP
Sbjct: 449 ALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKP 508

Query: 606 DDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNL 665
           DD T+V VLSACSHTGLVDKG +YF +M Q+YG+  NS+HY CM+DLLGRAG L++A NL
Sbjct: 509 DDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNL 568

Query: 666 MKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRW 725
           MK+MPF PDAA WG LLGASR+HG+T+L E AA+ IF MEP+NSGMYVLLSNLYA+SGRW
Sbjct: 569 MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRW 628

Query: 726 SEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKIYAYLEELDLKLKKD 785
            +V ++R++MRDKGVKKVPGYSW+E+QNKTH F+VGD  HPE ++I+A+LEELDL++KK 
Sbjct: 629 GDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKA 688

Query: 786 GFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAI 845
           G+VS T +VLHDVEEEEKE M++YHSE+LAVA+GI+ + SGRPIRVIKNLRVCEDCHNAI
Sbjct: 689 GYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAI 748

Query: 846 KRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           K +++I  R II+RD+NRFHHF +GSCSCGDYW
Sbjct: 749 KYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781

[Close]

BLAST of Lsi06G012950 vs. TAIR10
Match: AT1G09410.1 (AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 666.4 bits (1718), Expect = 2.4e-191
Identity = 315/687 (45.85%), Postives = 454/687 (66.08%), Query Frame = 1


Query: 192 TYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARALFNQMPEKD 251
           T N  I+      K   ARK+F+    + + SWN M++GY  N     AR LF++MP+++
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78

Query: 252 VVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKMD 311
           ++SWN ++SGY +NG ++EARK+FD M ++N +SW  L+  YV NG+++ A  LF    +
Sbjct: 79  IISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE 138

Query: 312 WEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSEAWRLFEEL 371
              VSW  ++ G+++  R+DDA  L++ +P +DNI+  +MI G  + G + EA  +F+E+
Sbjct: 139 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 198

Query: 372 PIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFD 431
             R V  WT MV+GY QN  +D+A +IF+ MPEK EVSW +M+ GYVQ+ +IE A ELF+
Sbjct: 199 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFE 258

Query: 432 KMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQL 491
            MP + V + N M++G  Q G I +AR +FD M +R+  SW  +I  + ++G   EAL L
Sbjct: 259 VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDL 318

Query: 492 FIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYCK 551
           FI M++ G       L   LS CA +A+   GKQ+H +LV+  F    YV + L+ MY K
Sbjct: 319 FILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378

Query: 552 CGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESMKM--TIKPDDVTLVG 611
           CG + ++  +F+    KDI+ WN++I+GYA HG G++AL VF  M +  + KP++VT V 
Sbjct: 379 CGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438

Query: 612 VLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFY 671
            LSACS+ G+V++G++ + SM   +G+   + HY CM+D+LGRAGR +EA+ ++ SM   
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE 498

Query: 672 PDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMR 731
           PDAA WG+LLGA R H    + E  A+ + E+EP+NSG Y+LLSN+YA+ GRW++V E+R
Sbjct: 499 PDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELR 558

Query: 732 LKMRDKGVKKVPGYSWVEVQNKTHIFTVGDC-SHPEAEKIYAYLEELDLKLKKDGFVSST 791
             M+ + V+K PG SW EV+NK H FT G   SHPE E I   L+ELD  L++ G+    
Sbjct: 559 KLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDC 618

Query: 792 KLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKI 851
              LHDV+EEEK + LKYHSE+LAVA+ +L +  G PIRV+KNLRVC DCH AIK ISK+
Sbjct: 619 SYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKV 678

Query: 852 AQRQIIVRDSNRFHHFSEGSCSCGDYW 876
            +R+II+RD+NRFHHF  G CSC DYW
Sbjct: 679 KEREIILRDANRFHHFRNGECSCKDYW 705

[Close]

BLAST of Lsi06G012950 vs. TAIR10
Match: AT1G56690.1 (AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 643.3 bits (1658), Expect = 2.2e-184
Identity = 303/673 (45.02%), Postives = 436/673 (64.78%), Query Frame = 1


Query: 205 KFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQ 264
           K + ARK F+ +  + + SWN ++SGY  NG    AR LF++M E++VVSWN ++SGY +
Sbjct: 32  KINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIK 91

Query: 265 NGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 324
           N ++ EAR +F+ M ++N +SW  ++  Y+Q G + +A  LF    +   VSW  + GG 
Sbjct: 92  NRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGL 151

Query: 325 VKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVS 384
           +   R+D AR L+D MPV+D ++   MI G  + G + EA  +F+E+  R+V  WT M++
Sbjct: 152 IDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMIT 211

Query: 385 GYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTM 444
           GY QN  +D A ++FE MPEK EVSW +M+ GY  S +IE A E F+ MP + V + N M
Sbjct: 212 GYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAM 271

Query: 445 VTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNR 504
           + G+ + G I +AR +FD M  RD  +W  MI  Y + G   EAL LF +M++ G   + 
Sbjct: 272 IVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSF 331

Query: 505 SALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFED 564
            +L   LS CA +A+ + G+Q+H  LV+  F    YV + L+ MY KCG + +A  VF+ 
Sbjct: 332 PSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDR 391

Query: 565 ITEKDIVSWNTMIAGYARHGFGKKALAVFESMKMT-IKPDDVTLVGVLSACSHTGLVDKG 624
            + KDI+ WN++I+GYA HG G++AL +F  M  +   P+ VTL+ +L+ACS+ G +++G
Sbjct: 392 FSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEG 451

Query: 625 MEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASR 684
           +E F SM   + +T   +HY+C +D+LGRAG++D+A+ L++SM   PDA  WGALLGA +
Sbjct: 452 LEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACK 511

Query: 685 IHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGY 744
            H    L E AA+ +FE EPDN+G YVLLS++ A+  +W +V  +R  MR   V K PG 
Sbjct: 512 THSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGC 571

Query: 745 SWVEVQNKTHIFTVGDC-SHPEAEKIYAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEH 804
           SW+EV  K H+FT G   +HPE   I   LE+ D  L++ G+      VLHDV+EEEK  
Sbjct: 572 SWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVD 631

Query: 805 MLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFH 864
            L  HSE+LAVA+G+L +P G PIRV+KNLRVC DCH AIK ISK+ +R+II+RD+NRFH
Sbjct: 632 SLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFH 691

Query: 865 HFSEGSCSCGDYW 876
           HF+ G CSC DYW
Sbjct: 692 HFNNGECSCRDYW 704

[Close]

BLAST of Lsi06G012950 vs. TAIR10
Match: AT4G16835.1 (AT4G16835.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 572.8 bits (1475), Expect = 3.7e-163
Identity = 267/592 (45.10%), Postives = 391/592 (66.05%), Query Frame = 1


Query: 287 NGLLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKK-RRLDDARSLFDRMPVRDN 346
           N ++A  V++G I+ A R+F        ++WN L+ G  K   R+ +A  LFD +P  D 
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 347 ISWNTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEK 406
            S+N M++ Y +N    +A   F+ +P +D  +W  M++GY + G +++A  +F  M EK
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK 184

Query: 407 NEVSWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMP 466
           NEVSWNAMI+GY++   +EKA   F   P R V +W  M+TGY ++  ++ A  +F +M 
Sbjct: 185 NEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT 244

Query: 467 -QRDCISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGK 526
             ++ ++W AMISGY ++ + E+ L+LF  M  +G   N S L+ AL  C+E++A +LG+
Sbjct: 245 VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGR 304

Query: 527 QLHGRLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHG 586
           Q+H  + K+          +L++MYCKCG + +A+ +FE + +KD+V+WN MI+GYA+HG
Sbjct: 305 QIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHG 364

Query: 587 FGKKALAVFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHY 646
              KAL +F  M    I+PD +T V VL AC+H GLV+ GM YF SM ++Y +     HY
Sbjct: 365 NADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHY 424

Query: 647 TCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEP 706
           TCM+DLLGRAG+L+EAL L++SMPF P AA +G LLGA R+H + +L E AAE + ++  
Sbjct: 425 TCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNS 484

Query: 707 DNSGMYVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHP 766
            N+  YV L+N+YA+  RW +V  +R +M++  V KVPGYSW+E++NK H F   D  HP
Sbjct: 485 QNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHP 544

Query: 767 EAEKIYAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSG 826
           E + I+  L+EL+ K+K  G+    +  LH+VEEE+KE +L +HSEKLAVAFG + +P G
Sbjct: 545 ELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQG 604

Query: 827 RPIRVIKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
             I+V KNLR+C DCH AIK IS+I +R+IIVRD+ RFHHF +GSCSCGDYW
Sbjct: 605 SQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656

[Close]

BLAST of Lsi06G012950 vs. TAIR10
Match: AT1G25360.1 (AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 535.0 bits (1377), Expect = 8.5e-152
Identity = 292/747 (39.09%), Postives = 433/747 (57.97%), Query Frame = 1


Query: 154 IIDSDIVRWNRKITAYMRNGQCESALSVFNGMP--RRSTVTYNAMISGYLSNCKFDRARK 213
           I + D +     ++ Y  +G    A  VF   P   R TV YNAMI+G+  N     A  
Sbjct: 75  ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 214 VFEKMPHR----DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSW-----NAMLSGY 273
           +F KM H     D  ++  +L+G     +       F+    K    +     NA++S Y
Sbjct: 135 LFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVY 194

Query: 274 AQ----NGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKMD-WEIVSW 333
           ++      L+  ARK+FDE+L+K+E SW  ++  YV+NG  +    L +   D  ++V++
Sbjct: 195 SKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAY 254

Query: 334 NCLMGGYVKKRRLDDARSLFDRMPVR----DNISWNTMITGYAQNGLLSEAWRLFEELPI 393
           N ++ GYV +    +A  +  RM       D  ++ ++I   A  GLL    ++   +  
Sbjct: 255 NAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR 314

Query: 394 RDVFAW---TAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELF 453
           R+ F++    ++VS Y + G  DEA  IFE+MP K+ VSWNA+++GYV            
Sbjct: 315 REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV------------ 374

Query: 454 DKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQ 513
                               SG+I +A+++F EM +++ +SW  MISG A++G  EE L+
Sbjct: 375 -------------------SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLK 434

Query: 514 LFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYC 573
           LF  MKR+G      A + A+ SCA + A+  G+Q H +L+K GF +    GNAL+ MY 
Sbjct: 435 LFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYA 494

Query: 574 KCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESM-KMTIKPDDVTLVG 633
           KCG +EEA  VF  +   D VSWN +IA   +HG G +A+ V+E M K  I+PD +TL+ 
Sbjct: 495 KCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLT 554

Query: 634 VLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFY 693
           VL+ACSH GLVD+G +YF+SM   Y I   + HY  +IDLL R+G+  +A ++++S+PF 
Sbjct: 555 VLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFK 614

Query: 694 PDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMR 753
           P A  W ALL   R+HG+ +LG  AA+ +F + P++ G Y+LLSN++AA+G+W EV  +R
Sbjct: 615 PTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVR 674

Query: 754 LKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKIYAYLEELDLKLKKDGFVSSTK 813
             MRD+GVKK    SW+E++ + H F V D SHPEAE +Y YL++L  ++++ G+V  T 
Sbjct: 675 KLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTS 734

Query: 814 LVLHDVEEE-EKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKI 873
            VLHDVE +  KE ML  HSEK+AVAFG++ +P G  IR+ KNLR C DCHN  + +S +
Sbjct: 735 FVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWV 790

Query: 874 AQRQIIVRDSNRFHHFSEGSCSCGDYW 876
            QR II+RD  RFHHF  G CSCG++W
Sbjct: 795 VQRDIILRDRKRFHHFRNGECSCGNFW 790

[Close]

BLAST of Lsi06G012950 vs. NCBI nr
Match: gi|659106935|ref|XP_008453471.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Cucumis melo])

HSP 1 Score: 1477.6 bits (3824), Expect = 0.0e+00
Identity = 721/767 (94.00%), Postives = 744/767 (97.00%), Query Frame = 1


Query: 109 SLFRGSSSRSIQTESITNELRASSNSSPSKKTLTQKLESKNTDPRIIDSDIVRWNRKITA 168
           SLF GSSSRSIQTESITN+LRASSNSSPSKKT TQKLESKNTDP I+DSDIV+WNRKI+A
Sbjct: 10  SLFIGSSSRSIQTESITNKLRASSNSSPSKKTWTQKLESKNTDPTIVDSDIVKWNRKISA 69

Query: 169 YMRNGQCESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVML 228
           YMR GQCESALSVFNGMPRRSTVTYNAMISGYLSN KFD ARKVFEKMPHRDLISWNVML
Sbjct: 70  YMRKGQCESALSVFNGMPRRSTVTYNAMISGYLSNYKFDCARKVFEKMPHRDLISWNVML 129

Query: 229 SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNG 288
           SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSG+AQNG VEEARKIFD+ML KNEISWNG
Sbjct: 130 SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG 189

Query: 289 LLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISW 348
           LL+AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKK+RLDDARSLFDRMPVRD ISW
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKKRLDDARSLFDRMPVRDKISW 249

Query: 349 NTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEV 408
           N MITGYAQNGLLSEA RLFEELPIRDVFAWTAMVSG+VQNGMLDEATRIFEEMPEKNEV
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV 309

Query: 409 SWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRD 468
           SWNAMIAGYVQSQQIEKARELFD+MPSRN+ SWNTMVTGYAQ GNIDQA+ILFDEMPQRD
Sbjct: 310 SWNAMIAGYVQSQQIEKARELFDQMPSRNISSWNTMVTGYAQCGNIDQAKILFDEMPQRD 369

Query: 469 CISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHG 528
           CISWAAMISGYAQSGQSEEAL LFI+MKRDGGILNRSAL  ALSSCAEIAA ELGKQLHG
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIEMKRDGGILNRSALVGALSSCAEIAALELGKQLHG 429

Query: 529 RLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKK 588
           RLVKAGF+TGYY GNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGK+
Sbjct: 430 RLVKAGFETGYYAGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKE 489

Query: 589 ALAVFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMID 648
           ALA+FESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMID
Sbjct: 490 ALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMID 549

Query: 649 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGM 708
           LLGRAGRLDEALNLMKSMPF+PDAATWGALLGASRIHGDT+LGEKAAE +FEMEPDNSGM
Sbjct: 550 LLGRAGRLDEALNLMKSMPFHPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGM 609

Query: 709 YVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKI 768
           YVLLSNLYAASGRW EVREMRLKMRDKGVKKVPGYSWVE+QNKTHIFTVGDCSHPEAE+I
Sbjct: 610 YVLLSNLYAASGRWREVREMRLKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERI 669

Query: 769 YAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRV 828
           YAYLEELDL+LKK+GFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIP GRPIRV
Sbjct: 670 YAYLEELDLELKKEGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRV 729

Query: 829 IKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           IKNLRVCEDCHNAIK ISKI QRQIIVRDSNRFHHFSEGSCSCGDYW
Sbjct: 730 IKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776

[Close]

BLAST of Lsi06G012950 vs. NCBI nr
Match: gi|778656470|ref|XP_004137551.2| (PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Cucumis sativus])

HSP 1 Score: 1460.7 bits (3780), Expect = 0.0e+00
Identity = 716/767 (93.35%), Postives = 737/767 (96.09%), Query Frame = 1


Query: 109 SLFRGSSSRSIQTESITNELRASSNSSPSKKTLTQKLESKNTDPRIIDSDIVRWNRKITA 168
           SLF GSSSRSIQTESITN+LRASS SSPSKKT TQKLESKN+D  I+DSDIV+WNRKI+A
Sbjct: 10  SLFIGSSSRSIQTESITNKLRASSTSSPSKKTWTQKLESKNSDSTIVDSDIVKWNRKISA 69

Query: 169 YMRNGQCESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVML 228
           YMR GQCESALSVFNGM RRSTVTYNAMISGYLSN KFD ARKVFEKMP RDLISWNVML
Sbjct: 70  YMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVML 129

Query: 229 SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNG 288
           SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSG+AQNG VEEARKIFD+ML KNEISWNG
Sbjct: 130 SGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG 189

Query: 289 LLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISW 348
           LL+AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV+K+RLDDARSLFDRMPVRD ISW
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISW 249

Query: 349 NTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEV 408
           N MITGYAQNGLLSEA RLFEELPIRDVFAWTAMVSG+VQNGMLDEATRIFEEMPEKNEV
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV 309

Query: 409 SWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRD 468
           SWNAMIAGYVQSQQIEKARELFD+MPSRN  SWNTMVTGYAQ GNIDQA+ILFDEMPQRD
Sbjct: 310 SWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRD 369

Query: 469 CISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHG 528
           CISWAAMISGYAQSGQSEEAL LFIKMKRDGGILNRSAL CALSSCAEIAA ELGKQLHG
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHG 429

Query: 529 RLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKK 588
           RLVKAGFQTGY  GNALLAMY KCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGK+
Sbjct: 430 RLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKE 489

Query: 589 ALAVFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMID 648
           ALA+FESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITAN+KHYTCMID
Sbjct: 490 ALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMID 549

Query: 649 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGM 708
           LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDT+LGEKAAE +FEMEPDNSGM
Sbjct: 550 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGM 609

Query: 709 YVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKI 768
           YVLLSNLYAASGRW EVREMR KMRDKGVKKVPGYSWVE+QNKTHIFTVGDCSHPEAE+I
Sbjct: 610 YVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERI 669

Query: 769 YAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRV 828
           YAYLEELDL+LKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIP GRPIRV
Sbjct: 670 YAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRV 729

Query: 829 IKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           IKNLRVCEDCHNAIK ISKI QRQIIVRDSNRFHHFSEGSCSCGDYW
Sbjct: 730 IKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776

[Close]

BLAST of Lsi06G012950 vs. NCBI nr
Match: gi|645269813|ref|XP_008240171.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Prunus mume])

HSP 1 Score: 1201.8 bits (3108), Expect = 0.0e+00
Identity = 582/778 (74.81%), Postives = 670/778 (86.12%), Query Frame = 1


Query: 104 RRIKASLFRGSSSRSIQTESITNELRASSNSS-----PSKKTLTQKLESKNTDPRIIDSD 163
           R++ +S F   S RS++T   +N    + N +     PSKKTLTQK  S N      DS+
Sbjct: 8   RQLHSSSF---SLRSLETRQPSNIKHQTGNPTCPNPIPSKKTLTQKRRSMNKLSNASDSE 67

Query: 164 IVRWNRKITAYMRNGQCESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVFEKMPH 223
           IV+ N+ IT  MRNG+CE+AL VFN MPRRS V+YNAMISGYL+N KFD A+ +FEKMP 
Sbjct: 68  IVKLNKDITTQMRNGRCEAALRVFNVMPRRSPVSYNAMISGYLANGKFDLAKDMFEKMPV 127

Query: 224 RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARKIFDEM 283
           RDL+SWNVMLSGYV+N +L AA ALF +MPEKDVVSWNAMLSGYAQNG V+EARK+F+ M
Sbjct: 128 RDLVSWNVMLSGYVRNRDLGAAHALFERMPEKDVVSWNAMLSGYAQNGYVDEARKVFERM 187

Query: 284 LDKNEISWNGLLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDARSLFD 343
            DKNEISWNGLLAAYVQNGRIEDARRLF+SK +WE VSWNCLMGG+VK++RL  AR +FD
Sbjct: 188 PDKNEISWNGLLAAYVQNGRIEDARRLFESKANWEAVSWNCLMGGFVKQKRLVHARQIFD 247

Query: 344 RMPVRDNISWNTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLDEATRI 403
           RMPVRD +SWNTMITGYAQNG +SEA RLF E PIRDVFAWT+M+SGYVQNGMLDE  R+
Sbjct: 248 RMPVRDEVSWNTMITGYAQNGEMSEARRLFGESPIRDVFAWTSMLSGYVQNGMLDEGRRM 307

Query: 404 FEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGNIDQAR 463
           F+EMPEKN VSWNAMIAGYVQ ++++ A +LF+ MP RN  SWNT++TGYAQSG+ID AR
Sbjct: 308 FDEMPEKNSVSWNAMIAGYVQCKRMDMAMKLFEAMPFRNASSWNTILTGYAQSGDIDSAR 367

Query: 464 ILFDEMPQRDCISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSSCAEIA 523
            +FD MP+RD ISWAA+I+GYAQ+G SEEAL LF++MKRDG  L RS+ TCALS+CAEIA
Sbjct: 368 KIFDSMPRRDSISWAAIIAGYAQNGYSEEALCLFVEMKRDGERLTRSSFTCALSTCAEIA 427

Query: 524 AFELGKQLHGRLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIA 583
           A ELGKQLHGR+ KAG++TG YVGNALL MYCKCGSIEEA+DVF+ I EKD+VSWNTMI 
Sbjct: 428 ALELGKQLHGRMTKAGYETGCYVGNALLVMYCKCGSIEEAYDVFQGIAEKDVVSWNTMIY 487

Query: 584 GYARHGFGKKALAVFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGIT 643
           GYARHGFG KAL VFESMK   IKPDDVT+VGVLSACSHTGLVD+G EYF SM Q+YGIT
Sbjct: 488 GYARHGFGSKALMVFESMKAAGIKPDDVTMVGVLSACSHTGLVDRGTEYFYSMNQDYGIT 547

Query: 644 ANSKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGEKAAEM 703
           ANSKHYTCMIDLLGRAGRL+EA NLM+ MPF PDAATWGALLGASRIHG+T+LGEKAA++
Sbjct: 548 ANSKHYTCMIDLLGRAGRLEEAQNLMRDMPFEPDAATWGALLGASRIHGNTELGEKAAQI 607

Query: 704 IFEMEPDNSGMYVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKTHIFTV 763
           IFEMEP+N+GMYVLLSNLYAASGRW EV +MRLKM+DKGV+KVPGYSWVEVQNK H F+V
Sbjct: 608 IFEMEPENAGMYVLLSNLYAASGRWGEVGKMRLKMKDKGVRKVPGYSWVEVQNKIHTFSV 667

Query: 764 GDCSHPEAEKIYAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI 823
           GD  HP+ +KIYA+LEELDLK+K++G++SSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI
Sbjct: 668 GDSIHPDKDKIYAFLEELDLKMKREGYISSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI 727

Query: 824 LSIPSGRPIRVIKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCGDYW 876
           LSIP+GRPIRVIKNLRVC DCHNAIK ISKI  R +I+RDS+RFHHFS G+CSCGDYW
Sbjct: 728 LSIPAGRPIRVIKNLRVCGDCHNAIKYISKIVGRTVILRDSHRFHHFSGGNCSCGDYW 782

[Close]

BLAST of Lsi06G012950 vs. NCBI nr
Match: gi|694330729|ref|XP_009356059.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Pyrus x bretschneideri])

HSP 1 Score: 1198.0 bits (3098), Expect = 0.0e+00
Identity = 572/746 (76.68%), Postives = 656/746 (87.94%), Query Frame = 1


Query: 131 SSNSSPSKKTLTQKLESKNTDPRIIDSDIVRWNRKITAYMRNGQCESALSVFNGMPRRST 190
           S N  PSKKTLTQK  S N      DS+IV+ N  IT +MRNG+CE+AL VFN MPRRS 
Sbjct: 39  SQNPIPSKKTLTQKRRSMNKLSNSSDSEIVKSNMDITTHMRNGRCEAALLVFNAMPRRSP 98

Query: 191 VTYNAMISGYLSNCKFDRARKVFEKMPHRDLISWNVMLSGYVKNGNLSAARALFNQMPEK 250
           V+YNAM+SGYL+N KFD A+ +FEKMP RDL+SWNVMLSGYV+N +L AARALF +MPEK
Sbjct: 99  VSYNAMVSGYLANGKFDLAKDMFEKMPERDLVSWNVMLSGYVRNRDLGAARALFERMPEK 158

Query: 251 DVVSWNAMLSGYAQNGLVEEARKIFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKM 310
           DVVSWNAMLSGYAQNG V+EAR IF  M DKNEISWNGLLAAYVQNGR+EDARRLF+SK 
Sbjct: 159 DVVSWNAMLSGYAQNGYVDEARTIFQGMPDKNEISWNGLLAAYVQNGRVEDARRLFESKA 218

Query: 311 DWEIVSWNCLMGGYVKKRRLDDARSLFDRMPVRDNISWNTMITGYAQNGLLSEAWRLFEE 370
           DWE VSWNCLMGG+VK++RL +AR LFD+MPVRD +SWNTMITGYAQNG +SEA RLFEE
Sbjct: 219 DWEAVSWNCLMGGFVKQKRLVNARQLFDQMPVRDEVSWNTMITGYAQNGQMSEARRLFEE 278

Query: 371 LPIRDVFAWTAMVSGYVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELF 430
            PIRDVFAWT+M+SGYVQNGMLDEA  IF+EMPEKN VSWNAMIAGYVQ ++++ A +LF
Sbjct: 279 CPIRDVFAWTSMLSGYVQNGMLDEARSIFDEMPEKNSVSWNAMIAGYVQCKRMDMATKLF 338

Query: 431 DKMPSRNVGSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQ 490
           + MPSRN  SWNT++TGYAQSG+I +A+ +FD MP+RD ISWAA+I+GYAQ+G SEEALQ
Sbjct: 339 EAMPSRNASSWNTILTGYAQSGDIVRAKEIFDSMPRRDSISWAAIIAGYAQNGYSEEALQ 398

Query: 491 LFIKMKRDGGILNRSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYC 550
           LF++MKRDG  L RS+ TCALS+CAEIAA ELGKQLHGR+ KAG++TG YVGNALL MYC
Sbjct: 399 LFVEMKRDGERLTRSSFTCALSTCAEIAALELGKQLHGRMTKAGYETGCYVGNALLVMYC 458

Query: 551 KCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKKALAVFESMKMT-IKPDDVTLVG 610
           KCGSIEEA+DVF+ I EKD+VSWNTMI GYARHGFG KAL VF+SMK   IKPDDVT+VG
Sbjct: 459 KCGSIEEAYDVFQGIAEKDVVSWNTMIYGYARHGFGLKALTVFDSMKAAGIKPDDVTMVG 518

Query: 611 VLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFY 670
           VLSACSHTGLV++G +YF SM Q+YGITANSKHYTCMIDLLGRAG L+EA NLM+ M F 
Sbjct: 519 VLSACSHTGLVERGTKYFYSMNQDYGITANSKHYTCMIDLLGRAGCLEEAQNLMRDMSFE 578

Query: 671 PDAATWGALLGASRIHGDTKLGEKAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMR 730
           PDAA WGALLGASRIHG+TKLGEKAA +IFEMEP+N+GMYVLLSNLYAASGRW +V +MR
Sbjct: 579 PDAAMWGALLGASRIHGNTKLGEKAARIIFEMEPENAGMYVLLSNLYAASGRWGDVNKMR 638

Query: 731 LKMRDKGVKKVPGYSWVEVQNKTHIFTVGDCSHPEAEKIYAYLEELDLKLKKDGFVSSTK 790
           LKMRDKGV+KVPGYSWVEVQNKTH F+VGD  HP+ +KIYA+LEELDL++K++G+VSSTK
Sbjct: 639 LKMRDKGVRKVPGYSWVEVQNKTHTFSVGDTIHPDKDKIYAFLEELDLEMKREGYVSSTK 698

Query: 791 LVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKIA 850
           LVLHDVEEEEKEHMLK+HSEKLAVAFGILSIP+GRP+RVIKNLRVCEDCHNAIK ISKI 
Sbjct: 699 LVLHDVEEEEKEHMLKHHSEKLAVAFGILSIPAGRPVRVIKNLRVCEDCHNAIKYISKIV 758

Query: 851 QRQIIVRDSNRFHHFSEGSCSCGDYW 876
            R II+RDS+RFHHF+ G+CSCGDYW
Sbjct: 759 GRTIILRDSHRFHHFTGGNCSCGDYW 784

[Close]

BLAST of Lsi06G012950 vs. NCBI nr
Match: gi|657966297|ref|XP_008374833.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Malus domestica])

HSP 1 Score: 1196.4 bits (3094), Expect = 0.0e+00
Identity = 584/783 (74.58%), Postives = 668/783 (85.31%), Query Frame = 1


Query: 96  RHGFRRNKRRIKASLFRGSSSRSIQTESITNELR--ASSNSSPSKKTLTQKLESKNTDPR 155
           R  +R  +    +S F   S +S Q  +I +      S N  PSKKTLTQK  S N    
Sbjct: 2   RGSYRFRQLHSGSSNFCSRSFKSQQPINIKDRTGNPTSQNPIPSKKTLTQKRRSMNKLSN 61

Query: 156 IIDSDIVRWNRKITAYMRNGQCESALSVFNGMPRRSTVTYNAMISGYLSNCKFDRARKVF 215
             DS+IV+ N  IT  MRNG+CE+AL VFN MPRRS V+YNAM+SGYL+N KFD A+ +F
Sbjct: 62  SSDSEIVKSNMDITTQMRNGRCEAALLVFNAMPRRSPVSYNAMVSGYLANGKFDLAKDMF 121

Query: 216 EKMPHRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGYAQNGLVEEARK 275
           EKMP RDL+SWNVMLSGYV+N +L AARALF +MPEKDVVSWNAMLSGYAQNG V+EAR 
Sbjct: 122 EKMPERDLVSWNVMLSGYVRNRDLGAARALFERMPEKDVVSWNAMLSGYAQNGYVDEART 181

Query: 276 IFDEMLDKNEISWNGLLAAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVKKRRLDDA 335
           IF  M DKNEISWNGLLAAYVQNGR+EDA RLF+SK DWE VSWNCLMGG+VK++RL +A
Sbjct: 182 IFQRMPDKNEISWNGLLAAYVQNGRVEDACRLFESKADWEAVSWNCLMGGFVKQKRLVNA 241

Query: 336 RSLFDRMPVRDNISWNTMITGYAQNGLLSEAWRLFEELPIRDVFAWTAMVSGYVQNGMLD 395
           R LFDRMPVRD +SWNTMITGYAQNG +SEA RLFEE PIRDVFAWT+M+SGYVQNGMLD
Sbjct: 242 RQLFDRMPVRDEVSWNTMITGYAQNGQMSEARRLFEECPIRDVFAWTSMLSGYVQNGMLD 301

Query: 396 EATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDKMPSRNVGSWNTMVTGYAQSGN 455
           EA  IF+EMPEKN VSWNAMIAGYVQS++++ A +LF+ MPSRN  SWNT++TGYAQSG+
Sbjct: 302 EARSIFDEMPEKNSVSWNAMIAGYVQSKRMDMATKLFEAMPSRNASSWNTILTGYAQSGD 361

Query: 456 IDQARILFDEMPQRDCISWAAMISGYAQSGQSEEALQLFIKMKRDGGILNRSALTCALSS 515
           I  A+ +FD MP+RD ISWAA+I+GYAQ+G SEEALQLF++MKRDG  L RS+ TCALS+
Sbjct: 362 IVCAKEIFDSMPRRDSISWAAIIAGYAQNGYSEEALQLFVEMKRDGERLTRSSFTCALST 421

Query: 516 CAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFEDITEKDIVSW 575
           CAEIAA ELGKQLHGR+ KAG++TG YVGNALL MYCKCGSIEEA+DVF+ I EKD+VSW
Sbjct: 422 CAEIAALELGKQLHGRMTKAGYETGCYVGNALLVMYCKCGSIEEAYDVFQGIAEKDVVSW 481

Query: 576 NTMIAGYARHGFGKKALAVFESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQ 635
           NTMI GYARHGFG KAL VF+SMK + IKPDDVT+VGVLSACSHTGLVD+G EYF SM Q
Sbjct: 482 NTMIYGYARHGFGLKALKVFDSMKAVGIKPDDVTMVGVLSACSHTGLVDRGTEYFYSMNQ 541

Query: 636 NYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTKLGE 695
           +YGIT NSKHYTCMIDLLGRAGRL+EA NLM+ M F PDAA WGALLGASRIHG+TKLGE
Sbjct: 542 DYGITENSKHYTCMIDLLGRAGRLEEAQNLMRDMSFEPDAAMWGALLGASRIHGNTKLGE 601

Query: 696 KAAEMIFEMEPDNSGMYVLLSNLYAASGRWSEVREMRLKMRDKGVKKVPGYSWVEVQNKT 755
           KAA +IFEMEP+N+GMYVLLSNLYAASGRW +V +MRLKMRDKGV+KVPGYSWVEVQNKT
Sbjct: 602 KAARIIFEMEPENAGMYVLLSNLYAASGRWGDVDKMRLKMRDKGVRKVPGYSWVEVQNKT 661

Query: 756 HIFTVGDCSHPEAEKIYAYLEELDLKLKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLA 815
           H F+VGD  HP+ +KIYA+LEELDLK+K +G+VSSTKLVLHDVEEEEKEHMLKYHSEKLA
Sbjct: 662 HTFSVGDTIHPDKDKIYAFLEELDLKMKLEGYVSSTKLVLHDVEEEEKEHMLKYHSEKLA 721

Query: 816 VAFGILSIPSGRPIRVIKNLRVCEDCHNAIKRISKIAQRQIIVRDSNRFHHFSEGSCSCG 875
           VAFGILSIP+GRP+RVIKNLRVCEDCHNAIK IS+I  R II+RDS+RFHHF+ G+CSCG
Sbjct: 722 VAFGILSIPAGRPVRVIKNLRVCEDCHNAIKYISRIVARTIILRDSHRFHHFTGGNCSCG 781

The following BLAST results are available for this feature:

BLAST of Lsi06G012950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP301_ARATH	2.7e-309	64.67	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN...	[more]
PPR25_ARATH	4.3e-190	45.85	Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN...	[more]
PPR84_ARATH	3.9e-183	45.02	Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidop...	[more]
PP316_ARATH	6.5e-162	45.10	Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidop...	[more]
PPR57_ARATH	1.5e-150	39.09	Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN...	[more]

BLAST of Lsi06G012950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV20_CUCSA	0.0e+00	93.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024980 PE=4 SV=1	[more]
W9SFH3_9ROSA	0.0e+00	74.32	Uncharacterized protein OS=Morus notabilis GN=L484_000356 PE=4 SV=1	[more]
M5WCR9_PRUPE	0.0e+00	78.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002162mg PE=4 SV=1	[more]
A0A0D2T8Y5_GOSRA	0.0e+00	73.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G289000 PE=4 SV=1	[more]
A0A061G2M0_THECC	0.0e+00	72.05	Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma c...	[more]

BLAST of Lsi06G012950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02750.1	1.5e-310	64.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G09410.1	2.4e-191	45.85	pentatricopeptide (PPR) repeat-containing protein	[more]
AT1G56690.1	2.2e-184	45.02	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G16835.1	3.7e-163	45.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G25360.1	8.5e-152	39.09	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Lsi06G012950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659106935\|ref\|XP_008453471.1\|	0.0e+00	94.00	PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Cucumis melo]	[more]
gi\|778656470\|ref\|XP_004137551.2\|	0.0e+00	93.35	PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Cucumis sativu...	[more]
gi\|645269813\|ref\|XP_008240171.1\|	0.0e+00	74.81	PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Prunus mume]	[more]
gi\|694330729\|ref\|XP_009356059.1\|	0.0e+00	76.68	PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Pyrus x bretsc...	[more]
gi\|657966297\|ref\|XP_008374833.1\|	0.0e+00	74.58	PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Malus domestic...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G012950.1	Lsi06G012950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 166..188 score: 0.017coord: 470..499 score: 3.8E-8coord: 708..737 score: 0.36coord: 253..282 score: 4.3E-10coord: 378..406 score: 3.2E-8coord: 315..341 score: 1.2E-6coord: 346..371 score: 1.8E-7coord: 222..251 score: 1.9E-7coord: 440..469 score: 8.8E-7coord: 408..438 score: 1.3E-7coord: 284..307 score: 7.5E-4coord: 642..666 score: 1.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 568..614 score: 1.3E-8coord: 189..219 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 253..281 score: 2.5E-8coord: 315..342 score: 6.4E-7coord: 543..571 score: 1.2E-4coord: 222..253 score: 1.3E-7coord: 346..371 score: 6.9E-6coord: 470..499 score: 5.0E-6coord: 440..469 score: 5.1E-5coord: 191..219 score: 2.6E-7coord: 643..666 score: 1.2E-4coord: 378..406 score: 1.6E-6coord: 408..437 score: 3.8E-7coord: 284..307 score: 1.9E-4coord: 571..597 score: 4.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 437..471 score: 11.477coord: 639..669 score: 8.659coord: 569..599 score: 10.117coord: 410..436 score: 7.377coord: 286..312 score: 5.733coord: 224..250 score: 7.509coord: 189..223 score: 11.005coord: 503..537 score: 6.018coord: 538..568 score: 8.199coord: 472..502 score: 8.298coord: 375..409 score: 11.937coord: 313..343 score: 9.832coord: 603..633 score: 7.026coord: 344..374 score: 10.446coord: 158..188 score: 8.243coord: 251..285 score: 12.54coord: 705..739 score: 8
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 549..727 score: 2.9E-4coord: 162..370 score: 2.9E-10coord: 386..494 score: 6.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 163..309 score: 4.55E-8coord: 375..465 score: 3.0
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 146..312 score: 0.0coord: 341..746 score: 0.0coord: 81..107 score:
None	No IPR available	PANTHER	PTHR24015:SF424	SUBFAMILY NOT NAMED	coord: 341..746 score: 0.0coord: 146..312 score: 0.0coord: 81..107 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G012950	Csa1G024980	Cucumber (Chinese Long) v2	culsiB071
Lsi06G012950	CSPI01G04250	Wild cucumber (PI 183967)	cpilsiB071
Lsi06G012950	Cucsa.111470	Cucumber (Gy14) v1	cgylsiB156
Lsi06G012950	CmaCh11G003050	Cucurbita maxima (Rimu)	cmalsiB143
Lsi06G012950	CmoCh11G003090	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G012950	Cla018933	Watermelon (97103) v1	lsiwmB414
Lsi06G012950	ClCG06G014410	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G012950	MELO3C029742.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G012950	Cla97C06G123880	Watermelon (97103) v2	lsiwmbB374
Lsi06G012950	Bhi02G000092	Wax gourd	lsiwgoB519
Lsi06G012950	CsGy1G004140	Cucumber (Gy14) v2	cgyblsiB068
Lsi06G012950	Carg09109	Silver-seed gourd	carlsiB540
Lsi06G012950	CsaV3_1G004250	Cucumber (Chinese Long) v3	cuclsiB082

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G012950	Cucumber (Chinese Long) v3	cuclsiB083
Lsi06G012950	Watermelon (97103) v2	lsiwmbB368
Lsi06G012950	Wax gourd	lsiwgoB492
Lsi06G012950	Bottle gourd (USVL1VR-Ls)	lsilsiB113
Lsi06G012950	Cucumber (Gy14) v1	cgylsiB182
Lsi06G012950	Cucurbita maxima (Rimu)	cmalsiB075
Lsi06G012950	Cucurbita maxima (Rimu)	cmalsiB218
Lsi06G012950	Cucurbita maxima (Rimu)	cmalsiB391
Lsi06G012950	Cucurbita moschata (Rifu)	cmolsiB061
Lsi06G012950	Cucurbita moschata (Rifu)	cmolsiB206
Lsi06G012950	Cucurbita moschata (Rifu)	cmolsiB377
Lsi06G012950	Cucurbita pepo (Zucchini)	cpelsiB040
Lsi06G012950	Cucurbita pepo (Zucchini)	cpelsiB301
Lsi06G012950	Cucurbita pepo (Zucchini)	cpelsiB432
Lsi06G012950	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G012950	Wild cucumber (PI 183967)	cpilsiB072
Lsi06G012950	Cucumber (Chinese Long) v2	culsiB072
Lsi06G012950	Melon (DHL92) v3.5.1	lsimeB391
Lsi06G012950	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G012950	Watermelon (Charleston Gray)	lsiwcgB366
Lsi06G012950	Watermelon (97103) v1	lsiwmB408
Lsi06G012950	Cucumber (Gy14) v2	cgyblsiB069
Lsi06G012950	Melon (DHL92) v3.6.1	lsimedB413
Lsi06G012950	Silver-seed gourd	carlsiB359
Lsi06G012950	Silver-seed gourd	carlsiB726