Lsi06G011320 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G011320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc finger protein 2, putative
Location	chr06 : 21572806 .. 21573282 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTAAACGCCGCCATGAACAACTACTCAACCTTGAGCTGCTTCTTGAACCATCTTCATCTTCTAATTTCTCAGCTCCTTTGAGTCCTCCAAATTGTGAGGCAGCTGCAACTGCTACTACTGCAAGGGTTTTCTCATGCAACTATTGCAAGAGGAAATTTTATAGCTCACAAGCGTTGGGAGGTCACCAAAATGCTCATAAATTGGAGAGAACTTTGGCAAAGAAGAGCAGAGAGATTAGAGGTTACAGAGGAGATTATGATGATCATCACAGTACAGCCAATAATATTATGATGATTAATAATAATTCAAGCCATTTGTGGAATAATAATGTTGAGATACCTATAATTACAACAACACCACCACCTGATCATCTACTCAGTGGTCCACGTGGCATTCCAGCTGATCATCATCATCATCATCATCAAGCTGATCATGATATTGGCCATCTTGACTTGTCTTTAAGGCTCTGA

mRNA sequence

ATGGAGTTTAAACGCCGCCATGAACAACTACTCAACCTTGAGCTGCTTCTTGAACCATCTTCATCTTCTAATTTCTCAGCTCCTTTGAGTCCTCCAAATTGTGAGGCAGCTGCAACTGCTACTACTGCAAGGGTTTTCTCATGCAACTATTGCAAGAGGAAATTTTATAGCTCACAAGCGTTGGGAGGTCACCAAAATGCTCATAAATTGGAGAGAACTTTGGCAAAGAAGAGCAGAGAGATTAGAGGTTACAGAGGAGATTATGATGATCATCACAGTACAGCCAATAATATTATGATGATTAATAATAATTCAAGCCATTTGTGGAATAATAATGTTGAGATACCTATAATTACAACAACACCACCACCTGATCATCTACTCAGTGGTCCACGTGGCATTCCAGCTGATCATCATCATCATCATCATCAAGCTGATCATGATATTGGCCATCTTGACTTGTCTTTAAGGCTCTGA

Coding sequence (CDS)

ATGGAGTTTAAACGCCGCCATGAACAACTACTCAACCTTGAGCTGCTTCTTGAACCATCTTCATCTTCTAATTTCTCAGCTCCTTTGAGTCCTCCAAATTGTGAGGCAGCTGCAACTGCTACTACTGCAAGGGTTTTCTCATGCAACTATTGCAAGAGGAAATTTTATAGCTCACAAGCGTTGGGAGGTCACCAAAATGCTCATAAATTGGAGAGAACTTTGGCAAAGAAGAGCAGAGAGATTAGAGGTTACAGAGGAGATTATGATGATCATCACAGTACAGCCAATAATATTATGATGATTAATAATAATTCAAGCCATTTGTGGAATAATAATGTTGAGATACCTATAATTACAACAACACCACCACCTGATCATCTACTCAGTGGTCCACGTGGCATTCCAGCTGATCATCATCATCATCATCATCAAGCTGATCATGATATTGGCCATCTTGACTTGTCTTTAAGGCTCTGA

Protein sequence

MEFKRRHEQLLNLELLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIITTTPPPDHLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL

Homology

[Close]

BLAST of Lsi06G011320 vs. Swiss-Prot
Match: ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11 LNLELLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHKL 70
          LNLEL+LEPSS S+ S+     +  +++     RVFSCNYC+RKFYSSQALGGHQNAHKL
Sbjct: 21 LNLELVLEPSSMSSSSSS----STNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKL 80

Query: 71 ERTLAKKSREI 82
          ERTLAKKSRE+
Sbjct: 81 ERTLAKKSREL 87

[Close]

BLAST of Lsi06G011320 vs. Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-12
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 1   MEFKRRHEQLLNLE---LLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYS 60
           + F   +   L+LE   L L  SS+S  S   +P   +    + + RVFSCNYC+RKFYS
Sbjct: 40  LSFNNNNNNNLDLESSSLTLPLSSTSESS---NPEQQQQQQPSVSKRVFSCNYCQRKFYS 99

Query: 61  SQALGGHQNAHKLERTLAKKSREIRGYRGDYDDHHSTAN 97
           SQALGGHQNAHK ERTLAK++  + G  G +    S++N
Sbjct: 100 SQALGGHQNAHKRERTLAKRAMRM-GLAGVFPGRGSSSN 134

[Close]

BLAST of Lsi06G011320 vs. Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1


Query: 44  RVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSR 80
           RVFSCNYC+RKFYSSQALGGHQNAHK ERTLAK+ +
Sbjct: 66  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQ 101

[Close]

BLAST of Lsi06G011320 vs. Swiss-Prot
Match: ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-11
Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 1


Query: 37  AATATTARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRG------------- 96
           + T+T  ++FSCNYC+R FYSSQALGGHQNAHK ERTLAK+ + +               
Sbjct: 52  STTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYGFSP 111

Query: 97  --YRGDYDDH-------HSTANNIMMINNNSSHLWNNN------VEIPIITTTPPPDHLL 145
             + G Y++H       HS ++ +   N    H    N       + P I   P  D+  
Sbjct: 112 LPFHGQYNNHRSLGIQAHSISHKLSSYNGFGGHYGQINWSRLPFDQQPAIGKFPSMDNF- 171

[Close]

BLAST of Lsi06G011320 vs. Swiss-Prot
Match: ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-10
Identity = 44/124 (35.48%), Postives = 63/124 (50.81%), Query Frame = 1


Query: 17  LEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAK 76
           L+   +  F+       CEA       RVFSCNYC+RKFYSSQALGGHQNAHK ERT+AK
Sbjct: 35  LDLKLNDTFNDDTKSTKCEA-----NPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAK 94

Query: 77  KSREIRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIITTTPPPDHLLSGPRGIPA 136
           ++  +    G +   ++  ++ + +  +S  L                 H LS P+ + +
Sbjct: 95  RAMHMGRMFGHHHRPYTYTSSSLGMQAHSGLL----------------HHTLSQPQPLVS 137

Query: 137 DHHH 141
             HH
Sbjct: 155 RFHH 137

[Close]

BLAST of Lsi06G011320 vs. TrEMBL
Match: M1BM51_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018743 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 69/152 (45.39%), Postives = 87/152 (57.24%), Query Frame = 1


Query: 14  ELLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHKLERT 73
           +LLL+ SSSS+ S+PLSP            RVFSCNYC+RKFYSSQALGGHQNAHKLERT
Sbjct: 17  DLLLDQSSSSSSSSPLSP---------VEPRVFSCNYCRRKFYSSQALGGHQNAHKLERT 76

Query: 74  LAKKSRE----IRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIITTTPPPDHLLS 133
           LAKKSRE    +RG    + +H+   N   +  +  SH  + +     +T     D +  
Sbjct: 77  LAKKSRELSSTLRGTHSSWSNHNINNNYRSLSPSGPSHTGHGH-GARFVTNN---DIISY 136

Query: 134 GPRGIPADHH---HHHHQADHDIGHLDLSLRL 159
           G R +   +    + H     D GHLDLSLRL
Sbjct: 137 GRREMMMSYESMKNGHESVQEDFGHLDLSLRL 155

[Close]

BLAST of Lsi06G011320 vs. TrEMBL
Match: V7C9B9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G147100g PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.5e-18
Identity = 70/164 (42.68%), Postives = 88/164 (53.66%), Query Frame = 1


Query: 11  LNLELLLEPSSSSNFS-APLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHK 70
           LNL+LLLEPSSSS+ S +P+SP            R+FSCNYC+RKFYSSQALGGHQNAHK
Sbjct: 20  LNLDLLLEPSSSSSSSPSPISP---------IEPRIFSCNYCQRKFYSSQALGGHQNAHK 79

Query: 71  LERTLAKKSREIRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIIT---------- 130
           LERTLAKKSRE+      Y      +      N + SH     + + ++           
Sbjct: 80  LERTLAKKSREMSSTMQSYGTQEQRS------NFSPSHHLGRALGVNVVDDQGQSYVRLG 139

Query: 131 -----TTPPPDHLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL 159
                +  P + + S  RG  ++H         DIG LDLSLRL
Sbjct: 140 GRKEYSFGPKEGMASWSRGYTSEH------VQEDIGQLDLSLRL 162

[Close]

BLAST of Lsi06G011320 vs. TrEMBL
Match: K4CBF9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 71/158 (44.94%), Postives = 87/158 (55.06%), Query Frame = 1


Query: 14  ELLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHKLERT 73
           +LL + SSSS+ S PLSP            RVFSCNYC+RKFYSSQALGGHQNAHKLERT
Sbjct: 17  DLLFDQSSSSSSSTPLSP---------VEPRVFSCNYCRRKFYSSQALGGHQNAHKLERT 76

Query: 74  LAKKSRE----IRGYRGDYDDHHSTANNIMMINNNS------SHLWNNNVEIPIITTTPP 133
           LAKKSRE    +RG    + +H ++ NN    N+ S      SH  + +       T   
Sbjct: 77  LAKKSRELSSTLRGPHSSWSNHSNSNNNSNSNNHCSLSPSGPSHTSHGHGHGARFVTN-- 136

Query: 134 PDHLLSGPRGIPADHH---HHHHQADHDIGHLDLSLRL 159
            D +  G R +   +    + H     D GHLDLSLRL
Sbjct: 137 NDLISYGRREMMMSYESMKNGHESVQEDFGHLDLSLRL 163

[Close]

BLAST of Lsi06G011320 vs. TrEMBL
Match: A0A0S3R868_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G476700 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 69/164 (42.07%), Postives = 87/164 (53.05%), Query Frame = 1


Query: 11  LNLELLLEPSSSSNFS-APLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHK 70
           LNL+LLLEPSSSS+ S +P+SP            R+FSCNYC+RKFYSSQALGGHQNAHK
Sbjct: 23  LNLDLLLEPSSSSSSSPSPISP---------IEPRIFSCNYCQRKFYSSQALGGHQNAHK 82

Query: 71  LERTLAKKSREIRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIIT---------- 130
           LERTLAKKSRE+      Y      +      N + SH     + + ++           
Sbjct: 83  LERTLAKKSREMSSTMQSYGAPEQRS------NFSPSHHLGRALGVNVVDNQGQSYVRLG 142

Query: 131 -----TTPPPDHLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL 159
                +    + + S  RG  ++H         DIG LDLSLRL
Sbjct: 143 GRKEYSFGSKEGVASWSRGYASEH------VQEDIGQLDLSLRL 165

[Close]

BLAST of Lsi06G011320 vs. TrEMBL
Match: A0A0L9TF34_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan627s006500 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 69/164 (42.07%), Postives = 87/164 (53.05%), Query Frame = 1


Query: 11  LNLELLLEPSSSSNFS-APLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHK 70
           LNL+LLLEPSSSS+ S +P+SP            R+FSCNYC+RKFYSSQALGGHQNAHK
Sbjct: 23  LNLDLLLEPSSSSSSSPSPISP---------IEPRIFSCNYCQRKFYSSQALGGHQNAHK 82

Query: 71  LERTLAKKSREIRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIIT---------- 130
           LERTLAKKSRE+      Y      +      N + SH     + + ++           
Sbjct: 83  LERTLAKKSREMSSTMQSYGAPEQRS------NFSPSHHLGRALGVNVVDNQGQSYVRLG 142

Query: 131 -----TTPPPDHLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL 159
                +    + + S  RG  ++H         DIG LDLSLRL
Sbjct: 143 GRKEYSFGSKEGVASWSRGYASEH------VQEDIGQLDLSLRL 165

[Close]

BLAST of Lsi06G011320 vs. TAIR10
Match: AT5G57520.1 (AT5G57520.1 zinc finger protein 2)

HSP 1 Score: 90.9 bits (224), Expect = 7.6e-19
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11 LNLELLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHKL 70
          LNLEL+LEPSS S+ S+     +  +++     RVFSCNYC+RKFYSSQALGGHQNAHKL
Sbjct: 21 LNLELVLEPSSMSSSSSS----STNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKL 80

Query: 71 ERTLAKKSREI 82
          ERTLAKKSRE+
Sbjct: 81 ERTLAKKSREL 87

[Close]

BLAST of Lsi06G011320 vs. TAIR10
Match: AT1G66140.1 (AT1G66140.1 zinc finger protein 4)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-13
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 1   MEFKRRHEQLLNLE---LLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYS 60
           + F   +   L+LE   L L  SS+S  S   +P   +    + + RVFSCNYC+RKFYS
Sbjct: 40  LSFNNNNNNNLDLESSSLTLPLSSTSESS---NPEQQQQQQPSVSKRVFSCNYCQRKFYS 99

Query: 61  SQALGGHQNAHKLERTLAKKSREIRGYRGDYDDHHSTAN 97
           SQALGGHQNAHK ERTLAK++  + G  G +    S++N
Sbjct: 100 SQALGGHQNAHKRERTLAKRAMRM-GLAGVFPGRGSSSN 134

[Close]

BLAST of Lsi06G011320 vs. TAIR10
Match: AT1G80730.1 (AT1G80730.1 zinc-finger protein 1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1


Query: 44  RVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSR 80
           RVFSCNYC+RKFYSSQALGGHQNAHK ERTLAK+ +
Sbjct: 66  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQ 101

[Close]

BLAST of Lsi06G011320 vs. TAIR10
Match: AT5G25160.1 (AT5G25160.1 zinc finger protein 3)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-12
Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 1


Query: 37  AATATTARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRG------------- 96
           + T+T  ++FSCNYC+R FYSSQALGGHQNAHK ERTLAK+ + +               
Sbjct: 52  STTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYGFSP 111

Query: 97  --YRGDYDDH-------HSTANNIMMINNNSSHLWNNN------VEIPIITTTPPPDHLL 145
             + G Y++H       HS ++ +   N    H    N       + P I   P  D+  
Sbjct: 112 LPFHGQYNNHRSLGIQAHSISHKLSSYNGFGGHYGQINWSRLPFDQQPAIGKFPSMDNF- 171

[Close]

BLAST of Lsi06G011320 vs. TAIR10
Match: AT5G10970.1 (AT5G10970.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-12
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1


Query: 38  ATATTARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREI 82
           +T+T  ++FSCNYC+R FYSSQALGGHQNAHK ERTLAK+ + +
Sbjct: 96  STSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRM 139

[Close]

BLAST of Lsi06G011320 vs. NCBI nr
Match: gi|449457249|ref|XP_004146361.1| (PREDICTED: zinc finger protein 7 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 110/173 (63.58%), Postives = 122/173 (70.52%), Query Frame = 1


Query: 1   MEFKRRH---EQLLNLELLLEPSSSSNFSAPLSP--PNCEAAATATTARVFSCNYCKRKF 60
           MEFKRRH   +Q LNLELLLEPSSSS+ S+  +P  PN EA      ARVFSCNYCKRKF
Sbjct: 1   MEFKRRHHHQQQQLNLELLLEPSSSSSNSSSSAPISPNFEAVVG---ARVFSCNYCKRKF 60

Query: 61  YSSQALGGHQNAHKLERTLAKKSREIRGYRG--DYDDHHSTANN---IMMINNNSSH-LW 120
           YSSQALGGHQNAHKLERTLAKKSRE+RGYR   D+ +HH  +NN   +MM+NN SSH LW
Sbjct: 61  YSSQALGGHQNAHKLERTLAKKSRELRGYRSGDDHHEHHHNSNNNSMMMMMNNYSSHNLW 120

Query: 121 N-NNVEIPIITTTPPPDH--LLSGPRG-IPADHHHHHHQADHDIGHLDLSLRL 159
           N   +      TT   DH  LL+G RG IPAD        DHDIGHLDLSLRL
Sbjct: 121 NVETITSSTTATTIADDHHQLLNGRRGIIPADD-------DHDIGHLDLSLRL 163

[Close]

BLAST of Lsi06G011320 vs. NCBI nr
Match: gi|593783475|ref|XP_007154778.1| (hypothetical protein PHAVU_003G147100g [Phaseolus vulgaris])

HSP 1 Score: 99.0 bits (245), Expect = 7.9e-18
Identity = 70/164 (42.68%), Postives = 88/164 (53.66%), Query Frame = 1


Query: 11  LNLELLLEPSSSSNFS-APLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHK 70
           LNL+LLLEPSSSS+ S +P+SP            R+FSCNYC+RKFYSSQALGGHQNAHK
Sbjct: 20  LNLDLLLEPSSSSSSSPSPISP---------IEPRIFSCNYCQRKFYSSQALGGHQNAHK 79

Query: 71  LERTLAKKSREIRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIIT---------- 130
           LERTLAKKSRE+      Y      +      N + SH     + + ++           
Sbjct: 80  LERTLAKKSREMSSTMQSYGTQEQRS------NFSPSHHLGRALGVNVVDDQGQSYVRLG 139

Query: 131 -----TTPPPDHLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL 159
                +  P + + S  RG  ++H         DIG LDLSLRL
Sbjct: 140 GRKEYSFGPKEGMASWSRGYTSEH------VQEDIGQLDLSLRL 162

[Close]

BLAST of Lsi06G011320 vs. NCBI nr
Match: gi|502151017|ref|XP_004508237.1| (PREDICTED: zinc finger protein 2 [Cicer arietinum])

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 69/153 (45.10%), Postives = 84/153 (54.90%), Query Frame = 1


Query: 8   EQLLNLELLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNA 67
           E  LNL+LLLEPSSSS+ S+P+S      +   +T RVFSCNYC+RKFYSSQALGGHQNA
Sbjct: 25  ENHLNLDLLLEPSSSSSSSSPIS------SMEQSTPRVFSCNYCQRKFYSSQALGGHQNA 84

Query: 68  HKLERTLAKKSREIRGYRGDYD--DHHSTANNIMMINNNSSHLWNNNVEIPIITTTPPPD 127
           HKLERTLAKKSREI      Y   +     +N    +   +HL N               
Sbjct: 85  HKLERTLAKKSREISSAMQSYSYVEPAEQRSNFSSSSQYHAHLQN--------------- 144

Query: 128 HLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL 159
           +   G +     +  +      DI  LDLSLRL
Sbjct: 145 YGHGGRKEFSYGNSSNSEHVQEDISQLDLSLRL 156

[Close]

BLAST of Lsi06G011320 vs. NCBI nr
Match: gi|951006527|ref|XP_014508495.1| (PREDICTED: zinc finger protein 2 [Vigna radiata var. radiata])

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 71/162 (43.83%), Postives = 86/162 (53.09%), Query Frame = 1


Query: 11  LNLELLLEPSSSSNFS-APLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHK 70
           LNL+LLLEPSSSS+ S +P+SP            R+FSCNYC+RKFYSSQALGGHQNAHK
Sbjct: 23  LNLDLLLEPSSSSSSSPSPISP---------IEPRIFSCNYCQRKFYSSQALGGHQNAHK 82

Query: 71  LERTLAKKSREIRGYRGDY-----------DDHHSTANNIMMINNNSSHLWN--NNVEIP 130
           LERTLAKKSRE+      Y             H   A  + +++N            E  
Sbjct: 83  LERTLAKKSREMSSTMQSYGAPEQRSNFSPSHHLGRALGVNVVDNQGQSYVRLAGRKEYS 142

Query: 131 IITTTPPPDHLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL 159
             T     + + S  RG  ++H         DIG LDLSLRL
Sbjct: 143 FGT----KEGVASWSRGYASEH------VQEDIGQLDLSLRL 165

[Close]

BLAST of Lsi06G011320 vs. NCBI nr
Match: gi|920682244|gb|KOM29016.1| (hypothetical protein LR48_Vigan627s006500 [Vigna angularis])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 69/164 (42.07%), Postives = 87/164 (53.05%), Query Frame = 1


Query: 11  LNLELLLEPSSSSNFS-APLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHK 70
           LNL+LLLEPSSSS+ S +P+SP            R+FSCNYC+RKFYSSQALGGHQNAHK
Sbjct: 23  LNLDLLLEPSSSSSSSPSPISP---------IEPRIFSCNYCQRKFYSSQALGGHQNAHK 82

Query: 71  LERTLAKKSREIRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIIT---------- 130
           LERTLAKKSRE+      Y      +      N + SH     + + ++           
Sbjct: 83  LERTLAKKSREMSSTMQSYGAPEQRS------NFSPSHHLGRALGVNVVDNQGQSYVRLG 142

Query: 131 -----TTPPPDHLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL 159
                +    + + S  RG  ++H         DIG LDLSLRL
Sbjct: 143 GRKEYSFGSKEGVASWSRGYASEH------VQEDIGQLDLSLRL 165

The following BLAST results are available for this feature:

BLAST of Lsi06G011320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZFP2_ARATH	1.4e-17	67.61	Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1	[more]
ZFP4_ARATH	5.0e-12	46.46	Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2	[more]
ZFP1_ARATH	3.2e-11	86.11	Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1	[more]
ZFP3_ARATH	4.2e-11	35.29	Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1	[more]
ZFP7_ARATH	3.6e-10	35.48	Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1	[more]

BLAST of Lsi06G011320 vs. TrEMBL


Match Name	E-value	Identity	Description
M1BM51_SOLTU	3.2e-18	45.39	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018743 PE=4 SV=1	[more]
V7C9B9_PHAVU	5.5e-18	42.68	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G147100g PE=4 SV=1	[more]
K4CBF9_SOLLC	1.6e-17	44.94	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0S3R868_PHAAN	1.4e-16	42.07	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G476700 PE=...	[more]
A0A0L9TF34_PHAAN	1.4e-16	42.07	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan627s006500 PE=4 SV=1	[more]

BLAST of Lsi06G011320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57520.1	7.6e-19	67.61	zinc finger protein 2	[more]
AT1G66140.1	2.8e-13	46.46	zinc finger protein 4	[more]
AT1G80730.1	1.8e-12	86.11	zinc-finger protein 1	[more]
AT5G25160.1	2.4e-12	35.29	zinc finger protein 3	[more]
AT5G10970.1	4.1e-12	68.18	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Lsi06G011320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457249\|ref\|XP_004146361.1\|	2.4e-38	63.58	PREDICTED: zinc finger protein 7 [Cucumis sativus]	[more]
gi\|593783475\|ref\|XP_007154778.1\|	7.9e-18	42.68	hypothetical protein PHAVU_003G147100g [Phaseolus vulgaris]	[more]
gi\|502151017\|ref\|XP_004508237.1\|	1.0e-17	45.10	PREDICTED: zinc finger protein 2 [Cicer arietinum]	[more]
gi\|951006527\|ref\|XP_014508495.1\|	1.5e-16	43.83	PREDICTED: zinc finger protein 2 [Vigna radiata var. radiata]	[more]
gi\|920682244\|gb\|KOM29016.1\|	2.0e-16	42.07	hypothetical protein LR48_Vigan627s006500 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0060862	negative regulation of floral organ abscission
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G011320.1	Lsi06G011320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 48..68 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 46..73 score: 11
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 42..73 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G011320	CSPI01G20160	Wild cucumber (PI 183967)	cpilsiB065
Lsi06G011320	Cucsa.092400	Cucumber (Gy14) v1	cgylsiB105
Lsi06G011320	CmaCh10G004020	Cucurbita maxima (Rimu)	cmalsiB077
Lsi06G011320	CmaCh11G004010	Cucurbita maxima (Rimu)	cmalsiB148
Lsi06G011320	CmoCh10G004330	Cucurbita moschata (Rifu)	cmolsiB063
Lsi06G011320	CmoCh11G003960	Cucurbita moschata (Rifu)	cmolsiB132
Lsi06G011320	MELO3C017474	Melon (DHL92) v3.5.1	lsimeB400
Lsi06G011320	ClCG06G013220	Watermelon (Charleston Gray)	lsiwcgB374
Lsi06G011320	MELO3C017474.2	Melon (DHL92) v3.6.1	lsimedB422
Lsi06G011320	Cla97C06G122660	Watermelon (97103) v2	lsiwmbB376
Lsi06G011320	Cp4.1LG18g06240	Cucurbita pepo (Zucchini)	cpelsiB303
Lsi06G011320	CsGy1G019990	Cucumber (Gy14) v2	cgyblsiB061
Lsi06G011320	Carg09019	Silver-seed gourd	carlsiB541
Lsi06G011320	Carg15248	Silver-seed gourd	carlsiB727

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G011320	Cucumber (Chinese Long) v3	cuclsiB076
Lsi06G011320	Cucumber (Chinese Long) v3	cuclsiB146
Lsi06G011320	Wax gourd	lsiwgoB475
Lsi06G011320	Wax gourd	lsiwgoB523
Lsi06G011320	Bottle gourd (USVL1VR-Ls)	lsilsiB061
Lsi06G011320	Cucumber (Gy14) v1	cgylsiB102
Lsi06G011320	Cucurbita pepo (Zucchini)	cpelsiB558
Lsi06G011320	Wild cucumber (PI 183967)	cpilsiB135
Lsi06G011320	Cucumber (Chinese Long) v2	culsiB063
Lsi06G011320	Cucumber (Chinese Long) v2	culsiB135
Lsi06G011320	Melon (DHL92) v3.5.1	lsimeB417
Lsi06G011320	Watermelon (97103) v1	lsiwmB416
Lsi06G011320	Cucumber (Gy14) v2	cgyblsiB124