Lsi06G007890 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G007890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 16412398 .. 16412870 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATTTTTAGAGATACTACTGCTACAGGGGTAAATGCTTACCCATCAACAAAACTTCCTTCAGATTCTGAAGATGAAAATAATGTTGGAAGCAATACGAACTTGCCTGGTGAAGAAAATGATAATGAAAAAAAGTAGAAAACGAGTTCGAAGGAAGAGGGACGAATTTGGTAGTTTCTTTTCTTCATTTATAGATGTGTATGCTGAGAACGCAAGAGAAAAATGACATCCTTGAGAAAAGATCTTTTAGTTCTACCGCCAGTCAAGTTAATGAGGGTCAATCATCAAGGAGAAAAGATGAAGTTGATGAAGAGCTTATGAAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGAACTTGCATGGAGAAAATTATTTTTACTCATGCCTGATTCAAAGAAGAAGGATTTCATAAACAGTATTTAG

mRNA sequence

ATGAGGATTTTTAGAGATACTACTGCTACAGGGGTAAATGCTTACCCATCAACAAAACTTCCTTCAGATTCTGAAGATGAAAATAATATGTGTATGCTGAGAACGCAAGAGAAAAATGACATCCTTGAGAAAAGATCTTTTAGTTCTACCGCCAGTCAAGTTAATGAGGGTCAATCATCAAGGAGAAAAGATGAAGTTGATGAAGAGCTTATGAAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGAACTTGCATGGAGAAAATTATTTTTACTCATGCCTGATTCAAAGAAGAAGGATTTCATAAACAGTATTTAG

Coding sequence (CDS)

ATGAGGATTTTTAGAGATACTACTGCTACAGGGGTAAATGCTTACCCATCAACAAAACTTCCTTCAGATTCTGAAGATGAAAATAATATGTGTATGCTGAGAACGCAAGAGAAAAATGACATCCTTGAGAAAAGATCTTTTAGTTCTACCGCCAGTCAAGTTAATGAGGGTCAATCATCAAGGAGAAAAGATGAAGTTGATGAAGAGCTTATGAAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGAACTTGCATGGAGAAAATTATTTTTACTCATGCCTGATTCAAAGAAGAAGGATTTCATAAACAGTATTTAG

Protein sequence

MRIFRDTTATGVNAYPSTKLPSDSEDENNMCMLRTQEKNDILEKRSFSSTASQVNEGQSSRRKDEVDEELMKCFKILNTMEDIDGEAYTKVLKLLHGELAWRKLFLLMPDSKKKDFINSI
Homology
[Close]
BLAST of Lsi06G007890 vs. TrEMBL
Match: A0A0J8EYG3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g141830 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 1 

Query: 3   IFRDTTATGVNAYPSTKLPSDSEDENNMC-----------------MLRTQEKNDILEKR 62
           IF DTTAT  +++PSTK PSDSEDE++                     ++ +K ++LEK+
Sbjct: 106 IFGDTTATRASSHPSTKSPSDSEDEDDTDGELGDSEKQSEEGPKAKKAKSNKKLELLEKK 165

Query: 63  -SFSSTASQVNEGQSS--RRKDEVDEELMKCFKILNTMEDIDGEAYTKVLKLLHGELAWR 121
            S SST+  +N+   S  + K++ D+ LM+C   L+ +E IDG ++ K  KL+H +  WR
Sbjct: 166 LSASSTSIPMNDSNDSGHQLKEDNDDLLMECIDTLSGLEGIDGASFAKATKLIHDDPTWR 225

[Close]
BLAST of Lsi06G007890 vs. TrEMBL
Match: A0A0A0LHR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825110 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-13
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 1 

Query: 36  QEKNDILEKRSFSSTASQVNEGQSSRRKDEVDEELMKCFKILNTMEDIDGEAYTKVLKLL 95
           + +NDILE R F   + + +E  SS+ +D  DE+L KC KILN+M DID +AYTKVLK L
Sbjct: 46  KRRNDILEGRLFGFPSGEFSE-ISSKERDYADEDLNKCIKILNSMVDIDDKAYTKVLKQL 105

Query: 96  HGELAWRKLFLLMPDSKKKDFINSI 121
             +  WRK FL +P+S+++ F+N++
Sbjct: 106 VADTTWRKAFLCIPESRRRGFVNNL 129

[Close]
BLAST of Lsi06G007890 vs. TrEMBL
Match: A0A0K9RBM6_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_091330 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 54/158 (34.18%), Postives = 77/158 (48.73%), Query Frame = 1 

Query: 3   IFRDTTATGVNAYPSTKLPSDSEDEN--------------------------NMCMLR-- 62
           IF DTTATG++++PSTK PSDSEDEN                          N   LR  
Sbjct: 143 IFGDTTATGLSSHPSTKSPSDSEDENDTDGEVGDLEKQCEEGPKSKKVKTSVNPKKLREK 202

Query: 63  ---------------TQEKNDILEKRSFSSTASQVNEGQSSRRKDEVDEELMKCFKILNT 118
                          +++K ++LEK+   +       GQ S+   E D+ LM+C   L+ 
Sbjct: 203 VNTAMADALVAMSENSKKKLELLEKKINGNNGG----GQQSK---EDDDLLMECIDTLSA 262

[Close]
BLAST of Lsi06G007890 vs. TrEMBL
Match: K7MAX1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G120200 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-07
Identity = 49/164 (29.88%), Postives = 72/164 (43.90%), Query Frame = 1 

Query: 3   IFRDTTATGVNAYPSTKLPSDSEDENN--------------------------------- 62
           +F D T +  N +PSTK PS ++D++N                                 
Sbjct: 117 VFWDKTPSSANQHPSTKSPSINDDDDNEEDTNFDQEGDVHQPKRKTIVHVSEDKKKLKAR 176

Query: 63  ----MCMLR-------TQEKNDILEKRSF----SSTASQVNE--GQSSRRKDEVDEELMK 117
               M           TQ K +ILEK S     +ST S   E  GQ S+   +  E ++ 
Sbjct: 177 KSDQMTFANALTNFGETQNKLEILEKMSADHVTTSTFSATGEVNGQKSQNNKQDKESILA 236

[Close]
BLAST of Lsi06G007890 vs. TrEMBL
Match: A0A0B2PYN4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012459 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.7e-07
Identity = 49/164 (29.88%), Postives = 72/164 (43.90%), Query Frame = 1 

Query: 3   IFRDTTATGVNAYPSTKLPSDSEDENN--------------------------------- 62
           +F D T +  N +PSTK PS ++D++N                                 
Sbjct: 107 VFWDKTPSSANQHPSTKSPSINDDDDNEEDTNFDQEGDVHQPKRKTIVHVSEDKKKLKAR 166

Query: 63  ----MCMLR-------TQEKNDILEKRSF----SSTASQVNE--GQSSRRKDEVDEELMK 117
               M           TQ K +ILEK S     +ST S   E  GQ S+   +  E ++ 
Sbjct: 167 KSDQMTFANALTNFGETQNKLEILEKMSADHVTTSTFSVTGEVNGQKSQNNKQDKESILA 226

[Close]
BLAST of Lsi06G007890 vs. NCBI nr
Match: gi|659095125|ref|XP_008448411.1| (PREDICTED: uncharacterized protein LOC103490615 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-28
Identity = 76/159 (47.80%), Postives = 98/159 (61.64%), Query Frame = 1 

Query: 1   MRIFRDTTATGVNAYPSTKLPSDSEDEN-------------------------------- 60
           +RIF DTTA GVNA PST+L S+SED+N                                
Sbjct: 142 VRIFGDTTAIGVNACPSTRLISNSEDQNENDVASNTNVGVEENDKGKSKKRVRRNRDEFG 201

Query: 61  -------NMCMLRTQEKNDILEKRSFSSTASQVNEGQSSRRKDEVDEELMKCFKILNTME 120
                  ++     + KNDILEKRSF  T+S+V+E Q+S +K ++ EELM+   ILNTME
Sbjct: 202 NFFSSFLDVYAENAKRKNDILEKRSFGCTSSEVDESQTSSKKYDLHEELMEYLDILNTME 261

[Close]
BLAST of Lsi06G007890 vs. NCBI nr
Match: gi|659123601|ref|XP_008461742.1| (PREDICTED: uncharacterized protein LOC103500275 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 6.2e-23
Identity = 68/150 (45.33%), Postives = 87/150 (58.00%), Query Frame = 1 

Query: 11  GVNAYPSTKLPSDSEDEN---------------------------------------NMC 70
           GV A PST+L SD EDEN                                       N+ 
Sbjct: 96  GVIACPSTRLISDFEDENENDVARNTKIGVEENDKGKSKKRVRRNRDEFDSFFSPFLNIY 155

Query: 71  MLRTQEKNDILEKRSFSSTASQVNEGQSSRRKDE-VDEELMKCFKILNTMEDIDGEAYTK 121
                  NDILEKRSF  T+S+V+E Q+S +KD+ + EELM+C  IL+TMED+DG+ Y+K
Sbjct: 156 AENAMRNNDILEKRSFGCTSSEVDESQTSSKKDDDLHEELMECLDILHTMEDVDGDTYSK 215

[Close]
BLAST of Lsi06G007890 vs. NCBI nr
Match: gi|694390942|ref|XP_009371023.1| (PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri])

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-15
Identity = 52/100 (52.00%), Postives = 63/100 (63.00%), Query Frame = 1 

Query: 19   KLPSDSEDENNMCMLRTQEKNDILEKRSFSSTASQVNEGQ-SSRRKDEVDEELMKCFKIL 78
            +LPSDSEDENN        KNDI E    S   SQ N+    S  KD  DEELM+C +IL
Sbjct: 1186 RLPSDSEDENN------GSKNDI-EISESSKKGSQGNDNDVQSAAKDVADEELMQCLEIL 1245

Query: 79   NTMEDIDGEAYTKVLKLLHGELAWRKLFLLMPDSKKKDFI 118
            N ME++D + Y+K LKL H +  WRKLF+ MPD +KK FI
Sbjct: 1246 NNMEELDDDTYSKALKLFHDDATWRKLFVSMPDKRKKPFI 1278

[Close]
BLAST of Lsi06G007890 vs. NCBI nr
Match: gi|658035961|ref|XP_008353519.1| (PREDICTED: uncharacterized protein LOC103417092 [Malus domestica])

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-14
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 19  KLPSDSEDENNMCMLRTQEKNDILEKRSFSSTASQVNEGQ-SSRRKDEVDEELMKCFKIL 78
           +L SDSEDENN        KNDI E    S   SQ N+    S  KD  DEELM+C +IL
Sbjct: 604 RLXSDSEDENN------GSKNDI-EISESSKKGSQGNDNBVQSAAKDVADEELMQCLEIL 663

Query: 79  NTMEDIDGEAYTKVLKLLHGELAWRKLFLLMPDSKKKDFI 118
           N ME++D + Y+K LKL H +  WRKLF+ MPD +KK FI
Sbjct: 664 NNMEELDDDTYSKALKLFHDDATWRKLFVSMPDKRKKPFI 696

[Close]
BLAST of Lsi06G007890 vs. NCBI nr
Match: gi|870856646|gb|KMT08256.1| (hypothetical protein BVRB_6g141830 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 86.3 bits (212), Expect = 4.0e-14
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 1 

Query: 3   IFRDTTATGVNAYPSTKLPSDSEDENNMC-----------------MLRTQEKNDILEKR 62
           IF DTTAT  +++PSTK PSDSEDE++                     ++ +K ++LEK+
Sbjct: 106 IFGDTTATRASSHPSTKSPSDSEDEDDTDGELGDSEKQSEEGPKAKKAKSNKKLELLEKK 165

Query: 63  -SFSSTASQVNEGQSS--RRKDEVDEELMKCFKILNTMEDIDGEAYTKVLKLLHGELAWR 121
            S SST+  +N+   S  + K++ D+ LM+C   L+ +E IDG ++ K  KL+H +  WR
Sbjct: 166 LSASSTSIPMNDSNDSGHQLKEDNDDLLMECIDTLSGLEGIDGASFAKATKLIHDDPTWR 225

The following BLAST results are available for this feature:
BLAST of Lsi06G007890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G007890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0J8EYG3_BETVU2.8e-1437.68Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g141830 PE=4 S... [more]
A0A0A0LHR1_CUCSA4.1e-1348.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825110 PE=4 SV=1[more]
A0A0K9RBM6_SPIOL1.3e-1134.18Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_091330 PE=4 SV=1[more]
K7MAX1_SOYBN7.4e-0729.88Uncharacterized protein OS=Glycine max GN=GLYMA_15G120200 PE=4 SV=1[more]
A0A0B2PYN4_GLYSO9.7e-0729.88Uncharacterized protein OS=Glycine soja GN=glysoja_012459 PE=4 SV=1[more]
BLAST of Lsi06G007890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G007890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095125|ref|XP_008448411.1|2.9e-2847.80PREDICTED: uncharacterized protein LOC103490615 [Cucumis melo][more]
gi|659123601|ref|XP_008461742.1|6.2e-2345.33PREDICTED: uncharacterized protein LOC103500275 [Cucumis melo][more]
gi|694390942|ref|XP_009371023.1|2.8e-1552.00PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri][more]
gi|658035961|ref|XP_008353519.1|2.4e-1451.00PREDICTED: uncharacterized protein LOC103417092 [Malus domestica][more]
gi|870856646|gb|KMT08256.1|4.0e-1437.68hypothetical protein BVRB_6g141830 isoform B [Beta vulgaris subsp. vulgaris][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G007890.1Lsi06G007890.1mRNA