Lsi06G007630 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G007630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Exosome complex component CSL4
Location	chr06 : 14465080 .. 14483174 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTAGGCGGCGAGGCCTTGGCTCGAAAAATTCTCTGCAACCAAAAGTAAAGCAGAGGGCAGCCCGCCAGTTTGAATTGAAACTCAGTCTGTTCCAAATCTTAAAACCTATACAGTGTTGATTCGACGGAGTTTGTGAGGATGACAATGAAAGAAGGCGAGGAGGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACATCAAACCTGGAAGAGGCGCTTATGTCGCCGACAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTATTCCTCCTCCCACTGACTCTTCGGATTTGGTACAACTCTTTTACTTCTGTTTCACTGTTTCTGTTTTTTGCTTCATCGTTTGATGTTTGGAATTTATTATTATTATTATTGTTATCTTGAATCCTTGTTAGTTTTACTTCACATGGTTTGGTCTTGGGATGAAAGGAATTGTTTTCTTTGAACCCCATGTGAGTTGGGTTTGCCGTCTAAGGTTTAACTATGGAAAGTACTGGGTTAGCAAGGTTCATAATCATGTCTATGGTAATGTAGAATTACAAAATGAAGGGGAGATGAGATATCCCACACCAACAAGTTACAAAAAGGAGGTCGATCTGGTGAAGATATGAGTTAAGCTATAATTACAAAATAAATTAGATAAAGACGACTGAGTAGATGCAAAGTAAGTAACCAAATCCCAGAAAACATCCCTGCTAGTTTCTTGATTACAAAATTTTTTGGAGTCCTTTCAAACTGCAGCTTCCAGATAAGAGTAAACACCCAATTGGACCAAAGAATCTTGGCCAGGGCCTTAAAAGGAGTATCACAATAAGTTGAAGAGGGGCATTTGAAGCTTTGTTTGGCCAACATCACTGAAAATTGAAAATACGATATAATCTTTCCCCACAACCGGCTGCAAATGGAAAAAATAAGAATAGATGCTTTCATGATTCATCGCTCCTGTTACAAAGAACACACTGATTTGGGAGAGCACATAATTTCAAAGGATTCTATAGCATGTGTTCAACCTCTCAAAGGAGGGAATCCACAAAAAACCTTACCTTTTTAAGGCACAATATGTGCCAAATAAGATCCGATTTTTTATTGTCTAGAGTTGCCTAATGCAAAATAAGCTTAGGAGATAGAAAAAGCTCCCCCACTTTCAAGTATCCCCAATCTCATATCTTCCCAGTTATCTAGCCTAAAGCTAGACAACTTATTTGAGGGAACAACCCACTCTTCAACCTCCAAGTCATTAAAATTTGTTCTGAATTTCAAATCCTAATTATTATGAGTTTCAACCTGGCAATGGCTCACCATCAAATCCTTGAAGTCAATAAGTTTGTACAGTCGAGGGAAGTCAACATACATGGGCAATCAATCAGACATTTTTCCTTCCAAACATGTGTTCTATTCCCTATGCCTATCTCAATTTTGTATCAATCATTAGGGAGAAGAATGTTCTACATGATTTGGGATCAAGGACCCTTAAACAAGCAAGCACTTCTCATAGAAGTCTACCATAGTTTCTCATTCCATTGGTATTTAGGAGCAATGACCTGCCTCTACAAAGCATCCTTTTCCACAAAAAGTATCCAGCCTCATTTAGCTAAGAGAACTCAATTTTTAATGGCAAGATTACCAATGCCCAAGCCTCCCAGGCTCCCATCGTCATTGTAAGAGAGGTGGTTTCCTAGTCAATGAGATTGACAACACCCTCCTCTTTATTGCCTCTCCAAAAGAAAGTCTCTAATCATCTTCTCCAAGAGTTAAAAACTTGTCTAGGGCAAGAGAAAATTGAAAAGTAGTACAATCGTATATTCGTGAGGATTGATTTGGCCAAGGTAATTCTACCAACTATTGAAAGAGATAAGCATTTTCCACTGAGCTAGTTTTATATTCAATTTGATTAGCAATTGGTTGCCAAAATTAAGATTTACTTGGATTAACACCTAAGGGCATCCCCAAATACTCGTGAGTCCATATGCCATATAACGACCCGAGTTCAGGAGGGGGACATGAATGAACCGAGATCACATCCGAATGAGAGGGATCTTGAGGACATGAAAGCATGGTTAAGAAAGACTTAAAAGAATTGAAAGTTACTACCTATACCAACAAAGTGCATCTTCCTTTTCGGTGGCTCAATCATAAGAACTCCACAGTTAAGCGTGCTTAGCTTGGAGCAATCCTATGTTGGGTGACTTCCTGGGAATTTTCCTAGGATGCATGTGAGTGAGGACAAAGCATGCTGAAAGGACCCGTGTTGGTTTGTGAGGACAACTTTCACTCTTAGAAGCATTCAAGATAGTCAAGGATGACGTAGTTGGGTCGCAGGGGACGCAGGGGAATGCTGGGGCCATTAGTTGCCGAATTCGGATTCCGAATCCTGGGCCTGGGTCGTTACATGCCCACAATAAAACCCCACTCTTGTGCCACTGGGGAAACCGCATCCTTTCAAAATTTTCAACCAACTAAAAGAGACTTGGATGATCTTTAGACCAAAAATTACCTCAAAGCCAACAACCAAAACCTTCAAATCATTAAGCATAGACTTGTCATGGACAAAGAAAAAGAGTGTATCATCAACATACCAGTTGAAAATGTGAGCACCTCCACCATTGATGGACAAACCCCTCAGAAGGCAACCCCTCGCACCTTTGTCCAACATCCTACTAACTAAACACATTTGCCACCAACATAGAAAGTGATGTAAGAAGAATAGGGGTTAATTGGGTAGTTGGTTAATATTCTAGGTTAATTCCCTTTTTACCCCCTGCTTGTAATAAAACTCTATAAATAGGAACCTTCCCCTTCTTGTATCAAACACATTATTCATTCTAATAAAGATCCACAATATTGATTTTTGGAAAGAATTCTTTTTGTTATCTCTTTAGGCTACATCAATTTGGTATCAGAGCGATTGTCTGGGCCAGTGTTGATTGCCGTCGGTGGAAGACTGGAAAACACTTGGTGACGACGATCACAAGAGGGAGCTTCGTGAGTTGTGCTCGTTGTTGAACAACCCACATCTAATTAAGGGGAACCCTTGAAATTCCAAGAAAGAAAGAACAAACCAAAGATTTTTCAAGATTTTGCAAGAATGGATTATTGTCGATCAAAGAAGATGTCTAAGAAAAAACCAGCAGTTGTTATAGGCAAGAAAATTAATTTTACTTCCAAAAACAATGTTGGGATTCTGACTCAAGTGATTCGGAAGAAGAATTTCAACAGACTAATTTTGTCTGTGCTCGATTTTCTCAAAGAACCTATCATTATCAACATTGAAAATTTGATTCTAGTGATTCTAGTGACTCCGAAGACGTTTCTAAGTCAGTTTGGGATGGAATAAGAAGGCGGCAATATCGAAAAAGGGCTCAACGATCCAATCAAACTCATTTTTCAAGAAATCAACATAAAGATTGAGAGTTAGATGAATTAAAGAATCACCAAGAATGGATTTTTATAGCCCAAGAAGAATGTTCAAGACTCGAAATTATTCTTTTGGTTACGAAACACAATCAAGAAAGGTTGATTCAAGAAAATCAATGGTTGAGTTCTATACCCACGACGAGATTGAAACATATCCAAGAATCCAACAAAATGACTACTTTGATCCCATAGCATTGGAGGAAATAAAGAAACCAACAAAAGAAATCCAATGTTCATTGGAAAAAATGACTCAACATATTGATCATTTATCAATTCATTTGCAAGAGTTCAAGAATGGATTGATTTCATATACAGAAGAAAACACAAAGGACACAAAGGAATCACAGTTGGAAACTTTTCAATTAGAAAATTTTGAAGATAAAATTGGAAAAAATCTTGTTGAGACTCATGTAGTTAAATGGAGGTGACTGGGACAAAAATCATGAGAACGAAGTAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAATTTAAAGATGTTAATTCGGAAATTATCTCAAGTGAAGAAGAAAAATTCAACGAAGAAGATGGAATAGAGGTATCGAACACTGAGCAAGAATTGAGCAAGAACAATGACACATTGATTGCATTTGAAATGGATCACCAAACTGTCGAAGAACTTGAAGCGAATGATGAAGAAGACGTGGTTCTTGAACAATTCTCTTTGGAAGGTAGTTTTTTAATGATTGGTCCTTGGAATACGGTTTTGAATGAGCTTGGAGGAAACATCTTTTTTGAGTTTATGGCCAATGGAGAAGTTCATCTTTTGGTGGCAATATTGGATTTTTTGTCTCGAATTTATCACTTTGATCATAATATTTTTGTTCAAAATGTAGGAGGTTGGTTTGGTCATACTCTATTTAACAAGTTTATTTCATACCTTGTTTGCTTCATAATTTTTTTTCTTTTTAAAACTCGAGGACAAGTTTTCTTTTTAGAGGGGTAGAATGATGTAAGAAGAATAGGGGTTAATTGGGTAATTAGTTAATATTCTAGGTTAATTCCCTTTTTACCCCCCGCTTGTAATAAAACTCTATAAATAGGAACCTTCCCCTCTTGTATCAAACACATTATTCATTCTAATAAAGATCCACAATATTGATTCTTGGAAAGAATTCTCTTTGTTATCTCTTTAGGCTACATCAGAAAGGAAAGGGGAAAGAGGAACTCCTTGCCTCCTAGTTGTTCTTATTATACCCTTTGGTCTCCCATGAATCAAGATGGAGAATGAAGTGTTGGTGATGCAAGCTTTAATCCAAGCAATTCACTAAACGTCAAAATCTTTTCGTTTAAGAACATCAAAGAGAAAGTCCCATTCAACCATGTCATAGGCCTTCTAAAAATCAAGTTACTGACTACAAAGTCATCAAGTAATTCGTTATCAATCAAAATGAGGTCAATGATCAGCCTTCCATTAATAAGTGCTGACACGCAAACGCTAGCTGTTTGATGGAGAGCTTTCTTTAGTCTCTTGGCTAAGATTTTAGCAATAAGCTTGTAAAGAATTGTAATCAAGCTAGCTAATTGGTTTGAAATCAGTCACTTTGGTAGCACTAGTTTTCATTAAAACAATGATTCAAGATGCCACTTTCAGAAAAGCTTTAGAACACCTTAAACACCTCCCTTTAATGGTGTTCCATACCTTTTAGAAAGTCACCAAGTATAACCATTCAATTCCGAGGCTTTGCCGGTTCCCATATCAACAATAGCTTCATTAATTTTTTTTTTAATTTAAGGAAAAGGGGCTTCCAACAAGGTACTACTCTGAATATTAATAGATTGCCAATTTAAATGAAAAGGAATGTATTAATTTCCACCCTTATTAGTGTATAAAATTTCAAAGATAACGCACTCATTGACAATCAAGTCCTCCACCAATAAAATTTCTCCCATCTCATTTAGGATTTGCTTGATGAGATTCTTCTTCGTTCTAGCATTAGCATGGTTGTGAAAAAATTTTGTATCCTCATCACCCTCCACTCTCCGCTTAAGCTTACATTATGCCTTCATAGCCTATCTTCTTTTATTATTCCAACCCTCCCTCAACCATCAAAATCCAAAAAATCACACCCCACAATGGCCAGAAAGAATAAATTACAGCGGGAATTGCAGGGTCTCCAGTCATCGATACATTATGATAAATCAACCACTTTAGCTATCTGGGAAGGTACTACGTTTGACCCATGAAGTTCCTCTCATGGATTGTGCGTGGACTATGTTCTTGGAAAAAGCGTGCTTTGGTTAAGAAGCTGATACAACAACATAACCCTGGCATTGTCCTTCTTCAGGAAACTAAACTACCATCTATTGATGCTTTTCTGGTTAAATCTATTTGGAGCTCTTCTTTTATTGGTTGGACGACTATTTATGCTATTGACTCCTTTGCGGGTATTCTCATTCTTTGGAGTGAACTTGACTACAGGGTTCAGGAGATTATTCAGGCATGTTTACGTTGTGCATTCACGTTGTTTTGGTTGATGGTTTTTCTTTTTGGCTTACAACAATCTATGGCCCTTCTGATAATATTTTTCATCCAGAATATTGGCAGGAACTTGATGACGTGGCCGGTCTTGGTGTTGATTGTGTTAGGATACCTTGTAACAAGAATACTCAAGAACACAAAGAACAAACAAAGAACACTAAAAGATAGATTTATATTGCAATATCAATAAAGAAACTACAATATCAAAATTTTTCTTTTCGAGTTTAGTCTTGGTGCCATCAATACTACTGATAGATTACAACGTCGTATGCCTTATATGCATCTCTCTCCTTCTTGGTGTCATATGTGTCATCAAAATGTTGAATCTCCTGCGCATCTCTTTATGCATTGCTTCTTTGCATCTCAGTTTTGGCAAATTATTCAGGAAGCTTTTGGGTGGTCCTTTCCATCTCCCAATAATAGCTTTGACCTTTTTGCTCTGATTATGGTCGGTCAACCTTTTGTTGGTACTAAGAAGAGGATTTGGTTGGCTCTTGTGAGGTCTTTCTTCTGGAACCTTTGAGGCGAGTGTAATGGTTGGCTTTTTAGAGATCCATTTTCATCTTTTGAGCGGTTCAAGGATTTAGTGTTCTCTACTACTTTTCTTTGGTGCAAAACTAAGCACCCATTTTCTCATTTCAGTTTATCTTATTTATGCTCTAACTGGCGCCTTCTATTGTAATCACCTATTGGTGTTGGTTTCTTTCTTTATTTCATTCATCAATGAAATGTTTCTATTTCTTAAAAGAAAAATCAAACAAAAAAAAAAGGGAAAAAAAAGGAAAATATAGTGGAGAGATGGACAAATATTTAATGCTTAAAAGAATAATTGAAGAAACTATTATTCTTGGTTAGTTTTGGTGTTTGAAGAAACTATTATTTTGGTGTATTATTGAATTATATTAGGGACAGGACGAAAGGTGAAATTTTCCTCTTGTTTTCTCTTATAACTCAAGACTGAATAAAACAGGAGAGTGTCTTAAACCCAATTATTTGGTTTTTTTCCCCTTTTAAGCATATCTATGCTTATATGAGACCTTAACCTCGGACTTAATACTTGTCATAGAAGCATGTTATAAATGTTACTTTATTTTCATGTATCAGTATTTTCTGTACCTTCAATTTTTATGTCTAATAGGCCTCTGATGTTGATGCTATGGCTGATTTGCATTGTTAGAGATCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCAGGATCTATTGTCATTGCTCGTGTAAGTTCCTTACTGCCCTTGCCATCTTTTTGTGCATGATATTTCAATTCCCATCACTCTTTAACTTTAGCACCTGTTGATGTACGTGATCGCGTCCACCCCCTCTCCCTTTCCTCATCTGATTTTAATTTTGATATGTAGACCTGTTGGAAAAAGTGATTTTGTATCTTTGGAGCATTAATCTTCTTTCATTTCTTCAATCAAGAGTGTTGTTTCTTTTTTAGATGCATAACCAAACTTTTACTGAGAAAAAAATAAAAGAATTATTGTTTCTTTTTTGGATGATGACCGAGCTTTCATTGAGAAAAAAATGAAAGAATAATAGCATCAAAAAGAGAAAGCCCACAAAATAAAGACAATCTACCTAAGAAGCACGAACACTTTAGTTTGGTTAGCGTGTCCGTGTCCGACACGTGTCGGACACTCCGACACTTCGACACTTGTTGGACACGTATCAGACACTTTTTAGTGCAACAAATGTGTTAGACATGCATTGAATACTTGTTGAGTAGACTAAAAAGACATATATGACAATAATAATAACTTTTGAGTGTGAAATACATCAAGGTAAGTCTTTTAAGCATATAAATGCATCAACCCATTTACTTTCAATTTTATTTTGGTATGAAAATGATATATATCTTTAAAAATGTATATTTTAATAAACGTATCCTTGCCGTGTCGTGTCCTAGATATTTAAAATATGGCGTGTCGCCATGTCCGTGTCGTGTCGTATCCGTGTCCATGCTTCTTAGCAATCTACTCATAGAATTTAATTGGATAAAGTATCTTATTGAATATATGCGAATTAGACATTCTTATATTGGAGAAAGACCCATTACAAATATGGAAAGAATATAATAAATACTAAATATTTGACGATTAATATTTACAATTATTCATTAGAAATTCCAACACTCCCCCTCAAGCTGGTTTAAAGATGTAATCCATATCCAGCTTGTTAATCAATTTGTCAAATTGCTTCTTTGGAAGTCCTTTAGTTAGGAAATCAGCAACTTGCTTTGATGTAGGAAGATAAGGAATGCATGTTGTACCCGCTTCAATTTTTTCCTTAATAAAATGTTTATCAACTTCGATGTTTTTTGTTCTATCATGTAAAATCGGATTATGAGCTATAGAGATGGCAACTTTATTGTCACAATATATCCATATAGGTGTCTTCAAGAGAATCTTCAATTCCTCAAGTATCCTTTTGATCCATACACCCTCACAAATTCCATGTGCTAAAGCTCTAAACTCTGCTTAAAATACTCCGTTCCATTATAAGAGTGTAAAATGCAAATTTTGGTCTAAAATTAGGTTTCAATCATATTATAAAAATGTTTAAATTTCTTTCACCTTAGATTTTTTTCCCATTAAATACACCCAAGATAGGCAAGTATTATCGTCAATAAAAGTAACAAATCATCCTTTTCCATTATGAGTCTTAATTTTAGAAGGGTCCCAAACATCACTATGTATTAAATAAAAGGTTTTGAGGCTTTACAAGGTTGGGTAAATATGTGGAGCGATCATTTTTTGCCAATATGCAACTTTCACAATCAAAGGAAGAGCAATCAATGTCCTTAAATAAATTTGGAAATAAATACTTGAGATAAGAAAAATTGGGATACCCTAGCGTAAGTTGCCATAATATAATTTGTTCTTTAATAGAAAGAGAACTAATACTATTGGGACCTTTGAGTTATTTTAGTACTCAAAGAGAACCTTCATCATAGTAGTAGAGGCCGTCAAGCATCCTAGCACTCCCAATCATTTTTTTCGAGTCCTGATGCTGAAAAACACAATGTGATTGAAATAATATAATATGACAGTTAAAATCTCTTGTAAGTTTGCTGACAACTAAAAGATTGAAAGTTCAGAGGCGTTCGGTCTAGCAAAATAAGACCAAGTGAATAATTAAAAAAAAAACTTAGTTATAGATGTCCACAGAGACTCGTTGAACCAAATACAGGACCAAACTTCACACGGAGGTCTCTCAGACCTTAAAAATCCTATTGTTCCTTTGTCCAAATCCCCCAAACAATAGCACACATCTTAGCTTGCCACAAAACCTTCAAGTTGCTGTGAGTAGGAAGGGAGGCTTTATATTGAACTGTTTAAAGGAAGAAAAATTCTATCATTGTTCCCTTGGGTTAAATGATTTGGGTTGGGAGTCATTTCACTCCAAGCTTGATGAACTACTACTTATGCTGAAACTAACATCCTCAAAGGTGTATCCTTTTCTAGTGAGTGCAGAATGTTCTCTTCTTAACAATACAGGAAAAATATTAAGAAGAAATAGTCATGGGGGGCACCTTATACTGTAGTTCCCTCTACGTAGCAAATAGAATCCTTTGCTGACGACCTAAATATGTGAGCGGGTTTTAAAATTGCAAATTGGCATTGTTGCTAGGTTGGGTTTTTTTGTGTCTCCCGTTCGTCCGAGAAAAAGAAAATATATTAAGGAAAAAACTAAGAAAAAATTGGAAAAAGGTTGAGGTCCAAAAAGAGAGGAAACATGATATAGATACAAAACTGGAAAAAGAAAAACAACTTTCCTTAAAGAGGAGGAACGTACAGAATAAACAAAAGAAAAGAAAACAGAAGAAACCTAACCAATAAACTAAAGAAAATTAAAAGAAAAAGGAGGAAAGATTAACGGGAGAGAGAGAAAAAGAAAAGAAAAGAAATGTTACCTTTTGTTGCCACTGGAATGTTTTTGTTGTAGTCACCTCACTGCTTTTGACGTTTTTCTGGATTATCCAAATAAAGACATACGTAGGTGATGTGTCAACAATTGTATTCAAAATGAAAGAGAAGTTCAGTTTAAATACAAAACTTTAGAATAACAACCTAAAAAAATTAGTTATCAACGGTAACTAAAGAACTAAAGAATTACAAGGGAATTGATTTAAGAGCCAACTAACTAACTAACTAAACTTAAAGAATCAGTAAACAACTAATATAAAAATACATCAAATTCCTTCCGTTCTAATGAAAGATAACTCGTCCTCGAGTTAAGTTGATAAATAAAACTGTTCAGGAGGAAAGTATTCAGTCAAATCAACTATGTTTAATACTAGACTGAAGTGTAGGTCATCGGGTGGCTCAATCTTGAAGGCATTGTCACCATACTTCTTCAACACTCGAAATGGTCCAAGTTTTCTAGGATGAAGCTTGCTGTAGGACCCTGCTGAAAATCGTGTTTTACGAAGATGGATCATCACCAAATCACCTTCCTTGAAGTCTTTAAATCTCTTATGTTGATCAGCATCCGATTTGTATTTAGCATTCATTTTCTCCAAGTGTTCTGTAACCTCTTTGTGCAATTCAACTACCCGTTCAGCGATGGATTCAGCTTCTAGATTAAGATCAACTGAAGAAGGTAAATTAGCAAGATCAACAGTTAATCTAGGAAGTTTTGTATAAACTATCTCAAATGGGGACTTCCTTGTGAACCTATTTTCATGTGGTTGTATGCAAATTCAGCTTGACCTAGAACAAGGTCCCATTGCTTTGGTTTTTCCCCTCCAAAGCAACATATAAGATTTCCGAGGATTCTGTTGGTTACTTCGGTTTGCCTATCAGTTTGTGGGTGACTTGTCGTTCTGAACTTCAAGCTTGTGTTGAATTTTTTCCACAAAGTTTTTCAAAAGTAGCTTAGGAACTTCACATCGCAATCTGAAACTATAGACTAAAGCACACCATATAAACGTACAATTTCTTTAAAAAAAAGGTTAGCCACATATATAGCTTTAAAAAAAAGGTTGTATGCAAATTCAGCTTGACCTAGAACAAGGTCCCATTGCTTTGGTTTTTCCCCTCCAAAGCAACGTATAAGATTTCCGAGGATTCTGTTGGTTACTTTGGTTTGCCTATCAGTTTGTGGGTGACTTGTCATTCTGAACTTCAAGCTTGTGTTGAATTTTTTCCACAAAGTTTTTCAAAAGTAGCTTAGGAACTTCACATCGCAATCTGAAACTATAGACTTAAGCACGATATAAACGTACAATTTCTTTAAAAAAAAAGGTTAGCCACATATATAGCATCAGAAGTTTTACGACAAGGGAGAAAATGAGTCATCTTGCTAAATCTATCAACCACTACTAATACTGAATCAAAACCTCTTTGGGTTTTTGGAAGGCCTAATATGAAATCCATTGAGAGATCCTCCCAAATATTTTCAGGGATAGGTAAAGGAGTGTATAATCCTGTATTTTGTTTATGCCTCTTTGCTGTTTGGCATGTGAAGCAATGCTTAATGAATTTAGTCACATCCTTGCGAGATTGTGGTCAATAATACCAATCATTTAGGAGTTGTAAAGTTTTACCCATTCCAAAATGTCCAACCAAGCCATTACTATGCAACACTTTGATTAACAACTCTCGAAGTGAAGTTTGAGGGATACATAACAAGTTATTTTTAAAGAGAAAGCCATTGACTAGATGAAAATCATTACAATTTACATGAGAGTTGCACATAGCCCAAATTTTATTAAAGTCAGGATCATTTTCATATCGAGTAGGAAGAGAATCAAAGGCTATTATACTACTTTTAAGAATAGTTAATAGGTTAACCTTCCTACTTAAAGCTCAACAACAATGTTAGTGCTACCAACCTTGTGTTTAATCACAAAATCAAACTTTGAAAGGACAGGCAACGAGCATGCGTTCGGCTAATAGTTTTCTATGTTTGTAGGAATTTGAGTGAAAAATGATCAGAAAATAATATGAATTCATGACCTAAGAGATAGTGTTCCCAAACCTTAAGTGCCCTTACCAAGGAATACAACTCTTGCTCGTTTGTGCTCCATTTTTGGTGTGCTTCACTTAGCTTCTCATTGAAAAATTCAATGGGGTGGTTTTTTTTTTGTGAAAGCACTACAATTTCGTATCCTAAAGCATCCACGACCACTTCGAACGATTGTAACTGTAAGAAGTCTGGAAGTGCTAGAACAGGTGCATTACATAGCTTGTCCTTCAAGTTGTGAAGTTGTTAGTTTGAGCATTAGTCCAAAGAAATTTCCTTTTTTAAGACATTCTGTGAGTGGAGCTACAAGAGTACTAAAATTCTTGATAAATTTTCGATTGAAAGAAGCAAGTCCCAAAAAACTTTGGATTTCTTGGACGGTCATGGGTAGGGGCCACTTTTTTATTGCTTGTACTTTAATTAGATCCACAACAACCCCATATTCATTAATAATATATCCTAGGATACTTATTTCTTTAACTAGAAAGGAACATTTTGTAAGATTTATATATAATTGATTATTTGCAAGAACTTGAAATAAGGAATACAAATGGGATAAGTGTTCTTCATGAGTAGAACTATAGACAAGGATATCATCGAAGTATACTACTAAGAATTTATTAAGAAAGGGATGAAGAACTTGAGTCATTATCCTCATGAATGTGCTAGGAGCATTTGTGAGACCGAAGGGCATTACCAACCATTTGAACAAGCCTTCATTAGTCTTAAAAGCTATCTTCCATTCATCTCCCAATCGGATTCTAATTTGATGCTATCCGCTTTTTAAGTCTATTTTGGAAAAACATTTAGCTCCCCCTAATTGATCTAGTAGGTCTTGGATTCTAGGGATGAGAAATCTGTACTTAATGGTTATTTTGTTAATGGCCTGACTATTCACACACATTCTCCACGTTCCATCTTTTTTGGGGGCTAAGAGGGCGGGGACTGCACATGGTCTCAAGCTTGGCCTTATATGTCCCTTTTCTAAGAGCTCTTGGATTTGCTCTTGTAATATGACATACTCACTAGGGCTCATTCTATAGTGTGGGAGATTAGGCAACATTGATCTGGGATGAAGTCAATATGATGCTGAATGCCCTTTAATGGTAGAAGGGGTAGAAGGTACTTCAAGTACTTGTGGAAATTCTTCAAAAATTCTATTGATTTCAGGAAGGTCACTTCGTTCTAGGGCTTGGTTCTAGTACTTGGTCTTTCACTATAAGAGCCCATAATTTGGTATCTTCCTTATCAATAATATGGCCATTGTGTATGAGGGAAAATAGTTGTTTTATAGTGCTGGTTTTTCCCTTAGACTCTGTTTTTTCCACATTGTTCATTGAAGGTAGGAGTTTAATCTTTCTCCCCATCCATGTGAATTCGTAGGTATTTTCCCTCTCTCGATGGATTGCTTGAACGTCATATTGCCAGGGGTACTAACAAAACGTGGCACACATCCATGTCAAGCACATCGCATATAATTTGATCTTTATAAAGGTTGCCAATTGAAAGAGTAATAATGCAAGTAGAACTTATCTGTGTTTCTCCACCCTTGACCCAACCTATCTTGTAAGGGTGAGAATGAGGGTCGAGTTGGAGGTTAAGCGTGTGCACCAGCTTGGAAGAAACAACATTCTCTCTGCGGCCACTATCAATTATCAGGTTACATACCTTCCCATTGATGGTACATCTCGTTTGAAACGGGGCATGCCTTTGCAGATTGACCTCTGTTTATGGTGTGAGTAAAATTCTTTGTAGCACACAAGATAATTGATCCCATGTGTCTGGTTCTAACTCATTGAACTCATCTTCAGAATTTTGCTCGTCCCTTTCTTCTTGTTGTTCTTCTTGTTGTTCTTCTTCTTCCTTGACGTAAGCTACAACTCTTCGTTGAGGACATTCATCGGATAGGTGCCTCTGCTGTCCACAACGAAAACATTTTCCAAGATTTGGTCATTGGTAGTTGTTCACGCTTCCTTTCTTGATAGCAGTCTCTTGGATCTTCACTCCTTGAATTGATTTACTGACTTGTTCTTGCTTGAAAGTACCTGAACCTTGATTTGGTTTGTTGATGTCCAGGTTCTTGCATTGGTAAGAGTTAAAAGGCCTATCCCAAGAACCTTTCTTGGAGCTGTTGGCCTTCAGTCTTTTCTCCAACTTGACTTCTGCTTTATATGTCATAGAAATTGCAGTTGGAAGTGTGCTAATTGGTTGAAGATCCATTTGTTCTTGGATGTCTTCCTTTAGACCATCGACAAACCCCGCAATTTGATAATTCTCAGTCTCATTTGTTCTTGTTCTTGTACTTAACCGGTGAAATTCTTCCGCATAGTCAGCCACACTATGACTACATTGCCTGCATTTTTAGTATTATTGATACAAGATTTGTTCATAGTTTGTTGGTAGAAATCTTTCTTTCATCATCTTGAGCATTCGTGGCCAACTATTAATCGGCCTCTTGCCTATCAAGCGTCGGTTGGATTGTACGTGGTCCCACCAAGCAGAGGCTCTTGATTTCAGCTTGAAGGTTACTAACTTCACTTTTTTATTCTCCAGTGTGTTCATATACTTGAAAAAGCTCTCCATGCTTTTAACCCAGTCAAGGAACGCCTCGAGATCTAGTTTGCCACTAAAGGAAGGTAAGTCGATCTTCATTTTATAATCTTGCTGTCGTTCATCTTGGTCTTGGTCATGATACCTTCGCAAATTTCTTCTATCCAACGGCTGACGTCTGAAAACCTCTTCTTCTTCTATTGAGAATTCTGAATCTTGATCCTCCAAGATTGGATCTTGAAATCTTGGAAGACGAAAAACTAGAGGATTTCCCTATGGGAAGTTGATATTCGTCTGGTTACCACTCCTTGGTAGCCTCTCCTCAGCTTCTTGAAAAGATCTCCTCATTCTTTCTTCTCCTCGGGTTGTCGTGGAATGGTTGCCAAGACTTGCTTCATTTGTCTTGACATTCGGTTTACTACTGCACTTAACTCAGCAATACCATTGTTCATTTCTCCGTGGTCTCTTCTACGGCCAACAATCGGGTCGTAGTTGTTTCCGGAGAAAAGGGCATGCTTTGCTCAGGATAGGTCTCTGCAGCCTTCCCCTTGCCGGTATCCACCGCGGTTTTACCAGCCATGAAGTCCCAAATTCGAAGGTTTCTGATACCAAACTTGATGTGTAAAGTTGAGAGAAAAGTCTAAATACTGAAATGCTTTCAATTGTATTCAAAATGAAAGAGAAGTTTAGTTTAAATACTAAACTTCAGAGTAACAACCTAAAAGAATTAGTTACCAACGGTAACTAAAGAACTAAAGAATTACAAGGAAATTAATTAAAGAACCAACTAATTAACTAACTAAACTTAAAGAATCAGTAAACAACTAATATAAAAATACATAAGTAGGTTATCTTCTAGTGTGGCTTGGCTTTTTTTCAATGATAAAACAATAAGCTTTTAATTTTAAAATAATGCGTAAGATGGCCGTGATTATTCCTTTTGCCTTTTCAGTCTTCTGAACAATACTAATTGAGGTTTACACCTTTAAAGCCTCAAGGGCTTAAGTCTACATGAATTCTACTTGCCATGATTTTTCTTTCGACTCTTTATTAGTCTATGGATGTCTCGGACAGTATTTCTTAGTATTCTTACCTTAATTGTAGGTCACAAAAGTAATGTCTAAAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAGAAGTTTACGGGAATTATAAGGTTTGAAATGTTCTTTTATGAAGCTTTTATTTATTCAGTGTTCTTTTTTGCATATATTTTATTCTTTTCTGTAGAAAGCTCTTCTACTATGACTATTTCTCTGTGCACAATGTGATGTAACTATGGGGACCGTTGTATCTATGTTGTGTTTGGTGCAGAGGACACATCTAGAGAGTAACTCTTGAAATTTGGTGATAGTTATGTTTTTGGCTGTTGTAAGTTTGAAGTAAGGAGACATAGAACTCTTGAAATTTTCCTTAGGATGTATTTTTTGAAGCTCTTTGAATCAAGTGGATTCTTTATCGAAAGTGGTATAAAAATTATTGCAGTTTTGGAATCGTTGCTAATAAAAATGGGATCAATGCTTGTTGAGGTGGAGAAGACTGAGGAGTTGGGGTAGACTCGAGAAGAGTTCCACGAATGGTGGTAAAGAAGTTGGAATGTGTTTGGCATGGACAAGAAGGATTGATTGCGGTGGAGAAAGCTTGGGAGCATCATTGGAAGACGGTTTGGCCTTTGGGGTAATGAGGGTGGTTGAAGAAAGATAGAGTAAGGGAGGATGTGGAGCTATGCATAGTGGAAAGTGGAAAGAAAACAGAGGGGATAGTATGGATAGCCGATGTGTATAGGAAAACTGGAGATCCATTCTTTAATGGTAACAATGTAGATTGGTGGCTACATAGAGTGGACATTACTTTGTAGTGAATCACACTTAATGAGGACTAAGAATTTGAAAGGAGGGTGTTATGTTTGAAAGGAGAACCTCTCTTTGTGGCATCAATGGGCGGATGGGCAAAGACTGATCCAGAGCTAGTATTCTGCCTGAGTCAACAACCATTCCCTTGCTGTTATAGGAATATGGGGATTTTTTTTTTGTACTAATGCTTGGGGAGTTTTGTTGTAGCCTTGGGAGAAGGGATATCCGTATCTGGAAGCCTAGTCCTTTGAAATGGTCCTCGTGTAAATCTTTTTTCTTTGTTTAATTAATTTTCTCCCTTGAGTGATTCGGTATGTGCCTCATTGTGGTAGGTGAAAATTCCTAAGAAGGTTAATATTTTATCGAGCATGTTCTCCATTTAAGAATAAACACATTCGATAAGGTTTCAAGGAGAGTGCCCAATTTGATGGGTTGATGGGTTGCATCCTTTGTAGGAGAGCAACAGAGAATCTTGATCATATTCTTTGGGGTGTGCTTTGCTTATGCTGTATGGAGTCATTTTTTTGAGGACGTTGGCATAGATTTGGCCAGATATTTGAGAGAGACGTTTGAGGAGCTCCTTCTCACCATCATCCTTTTTGTTATATAGAAAAGTTTTTGTGGCAAGCTGGGATTTGTGCCATTGTATGGGGGCTTTGGAGAGATAAAAAAGAATGTAGACTTTTTAGAGGGTTTGAGAGGCTCTGAGTGAGATTTGGTTCTATATTAGGTTAGGTTTGATGTGTCCTTGAGGGTGTCCATGACTAAGCCTTCTTGTAATTATCTATAAGGTCTTATTTTGTTGGATTTGGAGTCATTTTTGTAGGTTGCCTCTTCTGTGGACTCTTCTTTTTGTATGCTCTTGTATTCTTTCATTTGGTTATTTATTAAAAATAATAATAATTATAATAATAATAATAAAAAAAAGAGGAATGTGGGGACTTCGAACTAGGAAAGTATTTGGCTTTGTTGCCTGTGTGCTGTTACAACTTACAACCAATGCCAATTCCCAATAGAATATGCGAAGGCATCCCTTGTGCTTTTATTGAAGGCTTGCTAAATCAGACGTGTACTACTTGAACATGGTGGGGGTGGAAGTTCGTTTAAGCATGCCCATTTCTTTCCTATGTGACATTCTTTCACCTTAATTCGTTAAGGTTATGCTGTAACTTTCTTCTATTTCTATTAGAAAATTTAACTAAGGACATTGTTTCATATTACATGCTTTTCAGAAGTTTAAGTTTGCTTACAATGATGGAAGTGGAAAACAAGGAATTTTTTGTTTTTCATCTTGTATAATGGTGTAATTAAATAATTAAATCAACTTAAAATCGAAAAAGTTTATCTTCTCCTAAGGAGGAAGAAGACTCTCTTGCTTATCAAATCCATTTTTGTCATGAGAAAGCCTTCGTCACACTACCTTGCCAATTAGGTGGTATAAATATATTTTATATTATCTGTCTTTTATTTGACACGTCTTTTGACCGATTATGTTTGGAAATATTACTTTGAAAGATTATTCATGCTTTCTGTCTTAAATCACTTAAAAATCACTTCTGTAGGCAACAAGACGTTCGAGCAACGGAGATCGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCCTGAAATTCCTCTGTTGCATGTTCATAAAGGATGCAAAAGGCAGACTTAG

mRNA sequence

CCGTAGGCGGCGAGGCCTTGGCTCGAAAAATTCTCTGCAACCAAAAGTAAAGCAGAGGGCAGCCCGCCAGTTTGAATTGAAACTCAGTCTGTTCCAAATCTTAAAACCTATACAGTGTTGATTCGACGGAGTTTGTGAGGATGACAATGAAAGAAGGCGAGGAGGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACATCAAACCTGGAAGAGGCGCTTATGTCGCCGACAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTATTCCTCCTCCCACTGACTCTTCGGATTTGAGATCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCAGGATCTATTGTCATTGCTCGTGTCACAAAAGTAATGTCTAAAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAGAAGTTTACGGGAATTATAAGGCAACAAGACGTTCGAGCAACGGAGATCGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCCTGAAATTCCTCTGTTGCATGTTCATAAAGGATGCAAAAGGCAGACTTAG

Coding sequence (CDS)

ATGACAATGAAAGAAGGCGAGGAGGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAAAATTTTCGGACATCAAACCTGGAAGAGGCGCTTATGTCGCCGACAACACTGTTTATGCTTCTCTTTCTGGTTTCCGCCGCATTATTCCTCCTCCCACTGACTCTTCGGATTTGAGATCAACTGTGGAAGTGACTGGTCATAAGGCCCATGGTGCTGTTCCAGCTCCAGGATCTATTGTCATTGCTCGTGTCACAAAAGTAATGTCTAAAATGGCATCAGCTGATATCATGTGTGTTGGTCCAAAGTCTGTGAAGGAGAAGTTTACGGGAATTATAAGGCAACAAGACGTTCGAGCAACGGAGATCGATAAAGTAGATATGCATTTGTCATTTCGTCCTGGTGACATTGTCAAAGCTCTTGTTGTATCCTTTCTGCCTGAAATTCCTCTGTTGCATGTTCATAAAGGATGCAAAAGGCAGACTTAG

Protein sequence

MTMKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVKALVVSFLPEIPLLHVHKGCKRQT

Homology

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BLAST of Lsi06G007630 vs. Swiss-Prot
Match: EXOS1_HUMAN (Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 48/132 (36.36%), Postives = 70/132 (53.03%), Query Frame = 1


Query: 13  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHG 72
           +  PGE L    +  PG G Y     +++SL+G        +  +     V V       
Sbjct: 7   YCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLM----KSSENGALPVVSVVRETESQ 66

Query: 73  AVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSF 132
            +P  G+IV  +V+ + S+ A   I+ VG   +K  F G IR++DVRATE DKV+++ SF
Sbjct: 67  LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSF 126

Query: 133 RPGDIVKALVVS 145
           RPGDIV A V+S
Sbjct: 127 RPGDIVLAKVIS 134

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BLAST of Lsi06G007630 vs. Swiss-Prot
Match: EXOS1_MOUSE (Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-15
Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = 1


Query: 13  FVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHG 72
           +  PGE L    +  PG G Y     +++SL+G        T  +     V V       
Sbjct: 7   YCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLM----KTSENGAVPVVSVMRETESQ 66

Query: 73  AVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSF 132
            +P  G++V  +V+ + S+ A   I+ VG   +K  F G IR++D+RATE DKV+++ SF
Sbjct: 67  LLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSF 126

Query: 133 RPGDIVKALVVS 145
           RPGDIV A V+S
Sbjct: 127 RPGDIVLAKVIS 134

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BLAST of Lsi06G007630 vs. Swiss-Prot
Match: CSL4_SCHPO (Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csl4 PE=3 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1


Query: 14  VTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHKAHGA 73
           V PG+V+ + +    G G     + + ++ +G   I  P  +S      VE T       
Sbjct: 4   VLPGQVVARGAP--NGEGTVKRGDYIISTRTG---IFDPEKNSVTYPRKVEETA-----V 63

Query: 74  VPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMHLSFR 133
           +P  GSIV+ARV+++ ++ A+ +I  V     K++F G+I  QD+RATE +KV +  SFR
Sbjct: 64  LPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFR 123

Query: 134 PGDIVKALVVS 145
           PGDIV+ALV+S
Sbjct: 124 PGDIVRALVIS 124

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BLAST of Lsi06G007630 vs. TrEMBL
Match: A0A0A0L935_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G627150 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.6e-65
Identity = 131/142 (92.25%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 3   MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRST 62
           MKEGE++T EFVTPGEVLG FSD KPGRGAYV DNTVYASLSGFRRII PP+DSSDLRST
Sbjct: 1   MKEGEKDT-EFVTPGEVLGNFSDFKPGRGAYVTDNTVYASLSGFRRIIHPPSDSSDLRST 60

Query: 63  VEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATE 122
           VEVTGHKAHGAVPAPGSIVI RVTKVM+KMASADIMCVGPKSVKEKFTGIIRQQDVRATE
Sbjct: 61  VEVTGHKAHGAVPAPGSIVIVRVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATE 120

Query: 123 IDKVDMHLSFRPGDIVKALVVS 145
           IDKVDMHLSFRPGDIVKALV+S
Sbjct: 121 IDKVDMHLSFRPGDIVKALVLS 141

[Close]

BLAST of Lsi06G007630 vs. TrEMBL
Match: K7LJV1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G167500 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.4e-54
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 7   EEETTEFVTPGEVLGKFSDIKPGRGAYVA--DNTVYASLSGFRRIIPPPTDSSDLRSTVE 66
           EE+    VTPGEVLG+ SD+K GRGAY A  +NTVYASL+GFR  +PP  DSSDLR TVE
Sbjct: 3   EEKEAVMVTPGEVLGRTSDVKAGRGAYAALHNNTVYASLTGFRHTVPPAPDSSDLRPTVE 62

Query: 67  VTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 126
           VTGHKAHG VP PGS+VIARVTKVM++ ASADIMCVGPKSV+EKFTGIIRQQDVRATEID
Sbjct: 63  VTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEID 122

Query: 127 KVDMHLSFRPGDIVKALVVS 145
           KVDMHLSF PGDIV+ALV+S
Sbjct: 123 KVDMHLSFHPGDIVRALVLS 142

[Close]

BLAST of Lsi06G007630 vs. TrEMBL
Match: A0A0B2PZQ2_GLYSO (Exosome complex component CSL4 OS=Glycine soja GN=glysoja_020979 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.4e-54
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 7   EEETTEFVTPGEVLGKFSDIKPGRGAYVA--DNTVYASLSGFRRIIPPPTDSSDLRSTVE 66
           EE+    VTPGEVLG+ SD+K GRGAY A  +NTVYASL+GFR  +PP  DSSDLR TVE
Sbjct: 3   EEKEAVMVTPGEVLGRTSDVKAGRGAYAALHNNTVYASLTGFRHTVPPAPDSSDLRPTVE 62

Query: 67  VTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 126
           VTGHKAHG VP PGS+VIARVTKVM++ ASADIMCVGPKSV+EKFTGIIRQQDVRATEID
Sbjct: 63  VTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEID 122

Query: 127 KVDMHLSFRPGDIVKALVVS 145
           KVDMHLSF PGDIV+ALV+S
Sbjct: 123 KVDMHLSFHPGDIVRALVLS 142

[Close]

BLAST of Lsi06G007630 vs. TrEMBL
Match: C6T6J7_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.4e-54
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 7   EEETTEFVTPGEVLGKFSDIKPGRGAYVA--DNTVYASLSGFRRIIPPPTDSSDLRSTVE 66
           EE+    VTPGEVLG+ SD+K GRGAY A  +NTVYASL+GFR  +PP  DSSDLR TVE
Sbjct: 3   EEKEAVMVTPGEVLGRTSDVKAGRGAYAALHNNTVYASLTGFRHTVPPAPDSSDLRPTVE 62

Query: 67  VTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 126
           VTGHKAHG VP PGS+VIARVTKVM++ ASADIMCVGPKSV+EKFTGIIRQQDVRATEID
Sbjct: 63  VTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEID 122

Query: 127 KVDMHLSFRPGDIVKALVVS 145
           KVDMHLSF PGDIV+ALV+S
Sbjct: 123 KVDMHLSFHPGDIVRALVLS 142

[Close]

BLAST of Lsi06G007630 vs. TrEMBL
Match: A0A022RHS0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014169mg PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-53
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 1


Query: 3   MKE-GEEETTEFVTPGEVLGKFSDIKPGRGAYVA--DNTVYASLSGFRRIIPPPTDSSDL 62
           MKE GE E  +FVTPGEVLGK S++KPG GAYV+  DNTVYASL+G R + PPP +S+DL
Sbjct: 1   MKERGEAE--DFVTPGEVLGKTSELKPGNGAYVSPQDNTVYASLAGIRSLTPPPPESADL 60

Query: 63  RSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVR 122
           R TVEV GHKAHG VP PG+IV+ARVTKVM+KMASADI+CVGPKSV+EKFTGIIRQQDVR
Sbjct: 61  RPTVEVKGHKAHGPVPEPGAIVLARVTKVMAKMASADIVCVGPKSVREKFTGIIRQQDVR 120

Query: 123 ATEIDKVDMHLSFRPGDIVKALVVS 145
           ATEIDKV+MH SFRPGDIVKALV+S
Sbjct: 121 ATEIDKVEMHSSFRPGDIVKALVLS 143

[Close]

BLAST of Lsi06G007630 vs. TAIR10
Match: AT5G38890.1 (AT5G38890.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-46
Identity = 89/135 (65.93%), Postives = 110/135 (81.48%), Query Frame = 1


Query: 10  TTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRSTVEVTGHK 69
           TT  VTPG+V+GK ++ K G+GAYV D T+YASL+G  RI+ P  +S D R+ VEVTGHK
Sbjct: 2   TTGLVTPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHK 61

Query: 70  AHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEIDKVDMH 129
           AHG +P  GS+VIARVTKVM+KMA+ DI+CVG K+V+E F G+IRQQDVRATEIDKVDMH
Sbjct: 62  AHGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDMH 121

Query: 130 LSFRPGDIVKALVVS 145
            SF  GDIV+A+V+S
Sbjct: 122 QSFHAGDIVRAMVLS 136

[Close]

BLAST of Lsi06G007630 vs. NCBI nr
Match: gi|659130201|ref|XP_008465048.1| (PREDICTED: exosome complex component CSL4 [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 1.5e-67
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 3   MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRST 62
           MKEGE+ET EFVTPGE+LG FSD KPGRGAYVADNTVYASLSGFRRIIPPP+DSSDLRST
Sbjct: 1   MKEGEKET-EFVTPGEILGNFSDFKPGRGAYVADNTVYASLSGFRRIIPPPSDSSDLRST 60

Query: 63  VEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATE 122
           VEVTGHKAHGAVPAPGSIVIARVTKVM+KMASADIMCVGPKSVKEKFTGIIRQQDVRATE
Sbjct: 61  VEVTGHKAHGAVPAPGSIVIARVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATE 120

Query: 123 IDKVDMHLSFRPGDIVKALVVS 145
           IDKVDMHLSFRPGDIVKALV+S
Sbjct: 121 IDKVDMHLSFRPGDIVKALVLS 141

[Close]

BLAST of Lsi06G007630 vs. NCBI nr
Match: gi|449453260|ref|XP_004144376.1| (PREDICTED: exosome complex component CSL4 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 2.3e-65
Identity = 131/142 (92.25%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 3   MKEGEEETTEFVTPGEVLGKFSDIKPGRGAYVADNTVYASLSGFRRIIPPPTDSSDLRST 62
           MKEGE++T EFVTPGEVLG FSD KPGRGAYV DNTVYASLSGFRRII PP+DSSDLRST
Sbjct: 1   MKEGEKDT-EFVTPGEVLGNFSDFKPGRGAYVTDNTVYASLSGFRRIIHPPSDSSDLRST 60

Query: 63  VEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATE 122
           VEVTGHKAHGAVPAPGSIVI RVTKVM+KMASADIMCVGPKSVKEKFTGIIRQQDVRATE
Sbjct: 61  VEVTGHKAHGAVPAPGSIVIVRVTKVMTKMASADIMCVGPKSVKEKFTGIIRQQDVRATE 120

Query: 123 IDKVDMHLSFRPGDIVKALVVS 145
           IDKVDMHLSFRPGDIVKALV+S
Sbjct: 121 IDKVDMHLSFRPGDIVKALVLS 141

[Close]

BLAST of Lsi06G007630 vs. NCBI nr
Match: gi|1012238939|ref|XP_015940370.1| (PREDICTED: exosome complex component CSL4 [Arachis duranensis])

HSP 1 Score: 219.9 bits (559), Expect = 3.2e-54
Identity = 114/147 (77.55%), Postives = 126/147 (85.71%), Query Frame = 1


Query: 1   MTMKEGE-EETTEFVTPGEVLGKFSDIKPGRGAYVA--DNTVYASLSGFRRIIPPPTDSS 60
           M M+E E ++    VTPGEVLG+ SDIKPGRGAY A  + TVYASL+GFRR + PP DSS
Sbjct: 3   MAMEEDEKQQEAVLVTPGEVLGRVSDIKPGRGAYAALHNETVYASLTGFRRTLSPPPDSS 62

Query: 61  DLRSTVEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQD 120
           D R TVEVTGHKAHG VP PGSIVIAR+T+VM+K ASADIMCVGPKSV+EKFTGIIRQQD
Sbjct: 63  DQRPTVEVTGHKAHGPVPQPGSIVIARITEVMAKTASADIMCVGPKSVREKFTGIIRQQD 122

Query: 121 VRATEIDKVDMHLSFRPGDIVKALVVS 145
           VRATEIDKVDMHLSF PGDIVKALV+S
Sbjct: 123 VRATEIDKVDMHLSFHPGDIVKALVLS 149

[Close]

BLAST of Lsi06G007630 vs. NCBI nr
Match: gi|734358313|gb|KHN14806.1| (Exosome complex component CSL4 [Glycine soja])

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 7   EEETTEFVTPGEVLGKFSDIKPGRGAYVA--DNTVYASLSGFRRIIPPPTDSSDLRSTVE 66
           EE+    VTPGEVLG+ SD+K GRGAY A  +NTVYASL+GFR  +PP  DSSDLR TVE
Sbjct: 3   EEKEAVMVTPGEVLGRTSDVKAGRGAYAALHNNTVYASLTGFRHTVPPAPDSSDLRPTVE 62

Query: 67  VTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 126
           VTGHKAHG VP PGS+VIARVTKVM++ ASADIMCVGPKSV+EKFTGIIRQQDVRATEID
Sbjct: 63  VTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEID 122

Query: 127 KVDMHLSFRPGDIVKALVVS 145
           KVDMHLSF PGDIV+ALV+S
Sbjct: 123 KVDMHLSFHPGDIVRALVLS 142

[Close]

BLAST of Lsi06G007630 vs. NCBI nr
Match: gi|255634132|gb|ACU17429.1| (unknown [Glycine max])

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 7   EEETTEFVTPGEVLGKFSDIKPGRGAYVA--DNTVYASLSGFRRIIPPPTDSSDLRSTVE 66
           EE+    VTPGEVLG+ SD+K GRGAY A  +NTVYASL+GFR  +PP  DSSDLR TVE
Sbjct: 3   EEKEAVMVTPGEVLGRTSDVKAGRGAYAALHNNTVYASLTGFRHTVPPAPDSSDLRPTVE 62

Query: 67  VTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRATEID 126
           VTGHKAHG VP PGS+VIARVTKVM++ ASADIMCVGPKSV+EKFTGIIRQQDVRATEID
Sbjct: 63  VTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEID 122

Query: 127 KVDMHLSFRPGDIVKALVVS 145
           KVDMHLSF PGDIV+ALV+S
Sbjct: 123 KVDMHLSFHPGDIVRALVLS 142

The following BLAST results are available for this feature:

BLAST of Lsi06G007630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXOS1_HUMAN	2.2e-15	36.36	Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1	[more]
EXOS1_MOUSE	2.9e-15	35.61	Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=1 SV=1	[more]
CSL4_SCHPO	1.0e-12	36.64	Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Lsi06G007630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L935_CUCSA	1.6e-65	92.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G627150 PE=4 SV=1	[more]
K7LJV1_SOYBN	8.4e-54	78.57	Uncharacterized protein OS=Glycine max GN=GLYMA_10G167500 PE=4 SV=1	[more]
A0A0B2PZQ2_GLYSO	8.4e-54	78.57	Exosome complex component CSL4 OS=Glycine soja GN=glysoja_020979 PE=4 SV=1	[more]
C6T6J7_SOYBN	8.4e-54	78.57	Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1	[more]
A0A022RHS0_ERYGU	1.4e-53	77.93	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014169mg PE=4 SV=1	[more]

BLAST of Lsi06G007630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38890.1	1.2e-46	65.93	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Lsi06G007630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130201\|ref\|XP_008465048.1\|	1.5e-67	94.37	PREDICTED: exosome complex component CSL4 [Cucumis melo]	[more]
gi\|449453260\|ref\|XP_004144376.1\|	2.3e-65	92.25	PREDICTED: exosome complex component CSL4 [Cucumis sativus]	[more]
gi\|1012238939\|ref\|XP_015940370.1\|	3.2e-54	77.55	PREDICTED: exosome complex component CSL4 [Arachis duranensis]	[more]
gi\|734358313\|gb\|KHN14806.1\|	1.2e-53	78.57	Exosome complex component CSL4 [Glycine soja]	[more]
gi\|255634132\|gb\|ACU17429.1\|	1.2e-53	78.57	unknown [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000178	exosome (RNase complex)

Vocabulary: **INTERPRO**
Term	Definition
IPR025721	Exosome_cplx_N_dom
IPR019495	EXOSC1
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006626	protein targeting to mitochondrion
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G007630.1	Lsi06G007630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 74..147 score: 1.31
IPR019495	Exosome complex component CSL4	PFAM	PF10447	EXOSC1	coord: 104..144 score: 2.5
IPR025721	Exosome complex component, N-terminal domain	PFAM	PF14382	ECR1_N	coord: 13..49 score: 4.4
None	No IPR available	PANTHER	PTHR12686	3'-5' EXORIBONUCLEASE CSL4-RELATED	coord: 5..145 score: 1.1
None	No IPR available	PANTHER	PTHR12686:SF8	EXOSOME COMPLEX COMPONENT CSL4	coord: 5..145 score: 1.1
None	No IPR available	unknown	SSF110324	Ribosomal L27 protein-like	coord: 13..49 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G007630	CmoCh11G009830	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G007630	ClCG03G011510	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G007630	Cla97C03G061870	Watermelon (97103) v2	lsiwmbB362
Lsi06G007630	Bhi02G001064	Wax gourd	lsiwgoB521
Lsi06G007630	Cp4.1LG04g02020	Cucurbita pepo (Zucchini)	cpelsiB559
Lsi06G007630	Cp4.1LG18g01030	Cucurbita pepo (Zucchini)	cpelsiB304
Lsi06G007630	Carg16466	Silver-seed gourd	carlsiB830

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G007630	Silver-seed gourd	carlsiB251
Lsi06G007630	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G007630	Wax gourd	lsiwgoB531
Lsi06G007630	Cucumber (Gy14) v1	cgylsiB640
Lsi06G007630	Cucurbita maxima (Rimu)	cmalsiB078
Lsi06G007630	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G007630	Cucurbita moschata (Rifu)	cmolsiB064
Lsi06G007630	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G007630	Cucumber (Chinese Long) v2	culsiB058
Lsi06G007630	Cucumber (Chinese Long) v2	culsiB081
Lsi06G007630	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G007630	Watermelon (97103) v1	lsiwmB391
Lsi06G007630	Watermelon (97103) v1	lsiwmB398
Lsi06G007630	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G007630	Melon (DHL92) v3.6.1	lsimedB420