Lsi06G006980 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 11109787 .. 11112621 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTCAAAATAAAATAAAAATATTTCTCATAGATGTGGGTCCCACGAGGTGCACTTTTCCATTCTATTAGACGCTGTTCGTTTTTTCTAGATCTTTTCTAAATCTTTTTTATTTATTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCGTATATCGATTCAATATCCTTTTTCAGTTGGTGCTGTTTTGATTACTTTGCCTTCCACCTTTGGAATTCTAAGTGTGGTTAATTAAAACTTAAAAAGGAATTGATAGTTAACCTTGGAGCAATCCAGACCTATGTGTCGGTGTGTAGGACAGTCTTCACTCTTGTGAGCCGTTAAGGTGACATGGGCAGGATGCATGGATACAAGGGAAGAATGTCGGGGCTGTGTACCAAATCTGAATTCTGAATCCTAGGTCTAAGATGGTATATAATTGATCTAGTTTTTTCTTGTAATAGCTTGGATTATCGTGTGATTCTGATCATTGCTACTGATTTTCTGTTCTTGACAGGTTTTTTAGTTTTACAAACCATTTTTTTTAATTATTACCTTTTAGTTTTTCTTAAATCACCATAAACGTTCATTTGTTTTTCTTCCTCCACTCTGTTTTTCTCTGTTCTTTCTTATGCCTCCATGGAATAGACTCCCTCCCATTGTTGCTGTTGTAATTACTTTCTCTTCCACCTTTGGATGTCATAGGTTAAGAAAGGCTTACAAGAAGTGAGTTTCACCTTTCTTTTCAATGGCTAAATCATAAGAACTCCAATGTTAAGCCTGCTTGGCTTGGAGCAATTCTATATTGGGCGACCTTGCATCTTGACCCATGTTGGTTTGTTAGGACAATCTTCACTCTTTCGAAATAAGTGAGGTGATGTGACCAGGTAGCAGTAGATGCAAGGAAATGTTTGTCTCCTCTATTATTCTATTATTTCTAACCATGTTAAGCATCTTAGGAGAACTTCGATTCTACATCACCAAATCTTGCATCCAACCTCGATATTGTGCAAACTCTAGATCTTGGCTTCCAGTCCTTTGAGAACTTTTCCAGTAACTCTTTCGTTTTGGATTCTTTGCGCCTTTTCTCTCTTTTAAGGAGCCCCTGGATTTTCCTTTCTTTGGAAGGTTAAAATTCCTAAAAAGGTGAAAATTTTTGTCTGACAAGTTTTGCATGGGAGAGAATAATACTCAAGACTGTATCTAGAGGCTTTTCTCCATGGTGTTGCAGCCTCAATGGTGTGTTCTTTGTAGGAGACAAGAAGAAGATCATGACCATTTACTTTAGGATTGTGATCTTGTCACATCTTTGTGGAACAAGTTCTTTAGGACCTTTGGGATTGTGCTAGCTCATAATAGAGGATGTTGTTTGATGTTTGAGGAAGTGCTCTTGAATTCTCCTTTTCGTAAAAAAAGGAAGGGTTCTTTGGCAGTTTTGTTTTTCTGCTATGTTGTGGGCATCTGACTTGAGAGGAATGGTAGAATTTTTTGTGGGCTGGAGCTGTCTGGGGAGGATTTTTGGGATACGATTAAGTTTAATTCCTCCTTGAGGGCGTTTGTTAATACAAGTTTTTATAATTATCAGCTTACCCTTATTCTTTTGGATAGCACCCCTTTCTGTAATTAGGCGTGACTGTGAGGGCTTTGTTGTTTTTGAGATTGTTTTTTTGTTTACCCTTGTATATCCTATTTCATCCATCTCAATGAAAGCTTAGTTTCTTCCTATTTTCAGTTTCTTTTCTTTTTAAAGTCTTTTTTATTTAAAAAAAATTATTTTGATAAAATCAATTTCCATATTTTAGAAAACTTAAGGAGGAATTTATCAAACTGTATGTGACAATGCAAATGGATTCTGTTCTTTTCACGTTTGACATTACACATTACCACATGGAATGAATGGGATGTTATGTTAGGATTTGCCTTCTCCAACCACTGGCACTTTTCCCATACATCAAATAAAAGACGAGCAATCATTGTTGGATCCTGTAATGCCTGAAGATGGAATTAGCCACGGCAATGAGGATTCCTACTTCAGGTTCGCACCTCATGGGGAGCTTTGTAATCTTCAAAGTCTTTTGAGGCTTGAAAATCAGGTAATGGATGCTATTTCTTTTCATGTTTGTGTAGTAAGTAGTAACTTTGCCCACAATCTTAGTGAATGTGTGAGGAAGAATGGATGCTTACTCTTATGCTAA

mRNA sequence

ATGAAGGGTCAAAATAAAATAAAAATATTTCTCATAGATGTGGGTCCCACGAGAAAACTTAAGGAGGAATTTATCAAACTGTATGATTTGCCTTCTCCAACCACTGGCACTTTTCCCATACATCAAATAAAAGACGAGCAATCATTGTTGGATCCTGTAATGCCTGAAGATGGAATTAGCCACGGCAATGAGGATTCCTACTTCAGGTTCGCACCTCATGGGGAGCTTTGTAATCTTCAAAGTCTTTTGAGGCTTGAAAATCAGGTAATGGATGCTATTTCTTTTCATGTTTGTGTAGTAAGTAGTAACTTTGCCCACAATCTTAGTGAATGTGTGAGGAAGAATGGATGCTTACTCTTATGCTAA

Coding sequence (CDS)

ATGAAGGGTCAAAATAAAATAAAAATATTTCTCATAGATGTGGGTCCCACGAGAAAACTTAAGGAGGAATTTATCAAACTGTATGATTTGCCTTCTCCAACCACTGGCACTTTTCCCATACATCAAATAAAAGACGAGCAATCATTGTTGGATCCTGTAATGCCTGAAGATGGAATTAGCCACGGCAATGAGGATTCCTACTTCAGGTTCGCACCTCATGGGGAGCTTTGTAATCTTCAAAGTCTTTTGAGGCTTGAAAATCAGGTAATGGATGCTATTTCTTTTCATGTTTGTGTAGTAAGTAGTAACTTTGCCCACAATCTTAGTGAATGTGTGAGGAAGAATGGATGCTTACTCTTATGCTAA

Protein sequence

MKGQNKIKIFLIDVGPTRKLKEEFIKLYDLPSPTTGTFPIHQIKDEQSLLDPVMPEDGISHGNEDSYFRFAPHGELCNLQSLLRLENQVMDAISFHVCVVSSNFAHNLSECVRKNGCLLLC

Homology

[Close]

BLAST of Lsi06G006980 vs. TrEMBL
Match: A0A0A0M0L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657480 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.4e-23
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 14  VGPTRKLKEEFIKL--YDLPSPTTGTFP-IHQIKDEQSLLDPVMPEDGISHGNEDSYFRF 73
           + PT  L    + L   DLPSPTTGTFP IHQIKDEQSLL+PVMPEDGISHG+EDS+FRF
Sbjct: 56  INPTLLLDSPVMLLNTQDLPSPTTGTFPPIHQIKDEQSLLNPVMPEDGISHGSEDSFFRF 115

Query: 74  APHGELCNLQSLLRLENQ 89
           AP GELC LQSLLR+ENQ
Sbjct: 116 APQGELCTLQSLLRIENQ 133

[Close]

BLAST of Lsi06G006980 vs. NCBI nr
Match: gi|778664114|ref|XP_011660224.1| (PREDICTED: probable WRKY transcription factor 2 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 6.3e-23
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 14  VGPTRKLKEEFIKL--YDLPSPTTGTFP-IHQIKDEQSLLDPVMPEDGISHGNEDSYFRF 73
           + PT  L    + L   DLPSPTTGTFP IHQIKDEQSLL+PVMPEDGISHG+EDS+FRF
Sbjct: 56  INPTLLLDSPVMLLNTQDLPSPTTGTFPPIHQIKDEQSLLNPVMPEDGISHGSEDSFFRF 115

Query: 74  APHGELCNLQSLLRLENQ 89
           AP GELC LQSLLR+ENQ
Sbjct: 116 APQGELCTLQSLLRIENQ 133

[Close]

BLAST of Lsi06G006980 vs. NCBI nr
Match: gi|659085953|ref|XP_008443695.1| (PREDICTED: probable WRKY transcription factor 34 isoform X1 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 14  VGPTRKLKEEFIKL--YDLPSPTTGTFP-IHQIKDEQSLLDPVMPEDGISHGNEDSYFRF 73
           + PT  L    + L   DLPSPTTGTFP IHQIKDEQSLL+PVMPEDGISHG EDSY RF
Sbjct: 56  INPTLLLDSPVMLLNTQDLPSPTTGTFPPIHQIKDEQSLLNPVMPEDGISHGCEDSYLRF 115

Query: 74  APHGELCNLQSLLRLENQ 89
           AP GELC LQ LLRLEN+
Sbjct: 116 APQGELCTLQGLLRLENR 133

[Close]

BLAST of Lsi06G006980 vs. NCBI nr
Match: gi|659085959|ref|XP_008443698.1| (PREDICTED: probable WRKY transcription factor 20 isoform X2 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 14  VGPTRKLKEEFIKL--YDLPSPTTGTFP-IHQIKDEQSLLDPVMPEDGISHGNEDSYFRF 73
           + PT  L    + L   DLPSPTTGTFP IHQIKDEQSLL+PVMPEDGISHG EDSY RF
Sbjct: 56  INPTLLLDSPVMLLNTQDLPSPTTGTFPPIHQIKDEQSLLNPVMPEDGISHGCEDSYLRF 115

Query: 74  APHGELCNLQSLLRLENQ 89
           AP GELC LQ LLRLEN+
Sbjct: 116 APQGELCTLQGLLRLENR 133

The following BLAST results are available for this feature:

BLAST of Lsi06G006980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G006980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0L1_CUCSA	4.4e-23	74.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657480 PE=4 SV=1	[more]

BLAST of Lsi06G006980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G006980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664114\|ref\|XP_011660224.1\|	6.3e-23	74.36	PREDICTED: probable WRKY transcription factor 2 [Cucumis sativus]	[more]
gi\|659085953\|ref\|XP_008443695.1\|	1.5e-21	73.08	PREDICTED: probable WRKY transcription factor 34 isoform X1 [Cucumis melo]	[more]
gi\|659085959\|ref\|XP_008443698.1\|	1.5e-21	73.08	PREDICTED: probable WRKY transcription factor 20 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006980.1	Lsi06G006980.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G006980	CmoCh11G009600	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006980	MELO3C010057.2	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G006980	Cla97C03G061320	Watermelon (97103) v2	lsiwmbB362
Lsi06G006980	Cp4.1LG18g02530	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G006980	Cp4.1LG00g01530	Cucurbita pepo (Zucchini)	cpelsiB017
Lsi06G006980	CsGy1G031240	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006980	Carg22727	Silver-seed gourd	carlsiB485
Lsi06G006980	Carg17795	Silver-seed gourd	carlsiB886

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G006980	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G006980	Wax gourd	lsiwgoB511
Lsi06G006980	Wax gourd	lsiwgoB521
Lsi06G006980	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006980	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006980	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006980	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006980	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006980	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006980	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G006980	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G006980	Watermelon (97103) v1	lsiwmB391