Lsi06G006640 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA-binding family protein, putative isoform 1
Location	chr06 : 10156518 .. 10163859 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTCTTCACTTTCCGCTAAGAGGGCTTTTTGCCCTGAAAATTTGAGCCAAAAACTATCTGCGAAGTGCATTTGGGCGACTATTGGAAACCTGGAACTTCAAACTCTAGTAAGAAGAAGAAGAAGAAACAAGAAAAGCCATGGAAAAAGAAGAAAGCTCCTCGGAAAAGATGAGAATTTACGTCGGAGGACTGGGTGCCGCCATGACCGAAGACGATCTCAGAAAGGTTTTTCAGAGCGTCGGCGGTGTAGTGGAGGCCGTCGATTTCGTTCGTACCAAATCTCGCAGCTTCGCTTATGTCGACTTCTTTCCGTCGTCCCAATCTTCCCTCTCCAAACTTTTCAGCACTGTAAGTTTTTCTCCTCGATTCCATTGCCGAACTCTCATGTCATGTTTCCTTTTCCCGCTTTTAGTATATTTCTCTTGATTGGCGACGGCGTAGATTACCTTTCTCTTTCACAATTGTTCATGTGCTTATCTCCATAGCTGGTTGCGATTTTAACCTAATATTAGTTTGATTGATGTACTGTTCGTACCTCTTCATGAATTGAACGGCGTGTTCCTAGTTTAGCTGCTGAAAAGTTCGATATTCTTATACACAGTACAATGGATGTGCTTGGAAAGGAGGAAAGTTAAGGCTTGAGAAAGCCAAGGAAAGTTATCTTGCTCGTTTGAGGCGGGAATGGGAGGAAGATGCTCAAATTATGGATGATAATGTTGGTGTAGACATGGAGGTTGTTGCTCCAGAATCTACTAAGCATGTCACCAAGTCGGAGCACATTCAGATTTTCTTTCCAAGCTTAGGAGAGGTTGTTCTTTGGATATTGAGTTTTCATTTTGAGATGATGCAATTAATGGTTGTTCATTGGATTCTTGAGCATGAAATTTTGTTTACAGGTGAAGTCTTTGCCAATTAGTGGAACAGGGGCTCACAAATACGACTTTCCACATGTTGAGGTGCCTCCTCTTCCTGTGCATTTTTGTGACTGTGAAGAGCATAATGTTTCTGCTCCCATTGGCAATTCCAAGGAGACAAAAACAAGAGATTTGAATGCTGAGAATGGTGGAATGGATGAAGATGAAATCAAGATGATGAATGCAGTGTTGATCAAGCTCTTTGAGAGGCAAGAAGCTTCTCCATCTAATTGTAATGAGACCATGGCACTCAATGATAAGCACGACTCTACGAAATTGACTGATAATCAACCACTTGAAGATAATAAAGTGGACAGTGATGAAGATAACCTTGTGCTTAATGTGATGGCTAGTAACTGCAATTCCAGAACTATGCCATTGAACAGTGGAAATAAAAGCTTCAAAGCTCATGGGAACAGTAAGGTTAAGAATCATGCCACCATCGCCACAATTACTATTCTATCTATTTTTTTTATTGAGAGGCCATTTTTATTACAAGGGTTTGTTGCAGTGTTTTGGTTTTTTTACATTTAATTAGAATTTATTATCTTTGAACTTTGACTTGAGGTATACTTATAAAAGTGGACCGTTTCAGGGTGCGGCCAGGGACCAGAAAAATAATAGTAGAGTTCAAAGCAAAGAAAGGAAATCTATTATTAGTGAGGAATTTGATGGGAATGAATCTGTACTCAGCATCTCTACCAGCTATGGGGGCACTGATCCATCATATGATCCAGCTAGTTCCTCAAGACCTCAAGCTCCTGATCGAGGTCCACAGATTCAATCTTCACGTTCTCAGAAATCTTCATGGAAAACACTTATTCGTGATAAGAGTAGTGTTTCATTTAGCATTTCAGACATACTGCCTTCAGTTCCTTCGGCAAATGAAGAGCAAGCAGAAGCAGATGATCATAGTCTAGCTCATTCAATTCCTAACAGAAATAGTGACCTTACAACTGCTACGGTATTGGGAAGCACAACAAATGGAATTCAGTCTGGAAAAATCAATGCTTCTTTCAGCATTACAAATGTGCTGCCTTCGGTTCCTTCAGCAGATCAAGAGGAAGATGCTTCTGCTGATCTGAATCTAGCTCATTCAACTCCTAACAGAAATACTGACATTGCAGCTGACCCAGTATCGAAAAGTAAATCAGAAGAAATGAAATCTGTGGAGAGCTTCCCAGAAGCCCAGTGTACCGTTCCAAATGTCACATTGAATAAAGGCAGAGGTTCTTCATGGCGGCAAAAATCTTCTTGGACGCAATTGGTCAGTGAGGAAATTACCTCCTTCAGTATTACACAAATTTTACCAAATAATACTTATGAAAAGCAGGTACAAGGGGAATTTGATGCTACCGATGTTAATCTCGCTGCTCGGAGTGAAAGTAATGCTTCGAAAAAGCAGGACAGTCAATGTATAGCTGAAGATGAGTCTGCTGCATTTGTTATTCAAAAAGACGAAATTGCCTGGAATGATGTCAAGAAGACTGAACCACCAGTAGTGCAAGAGTGTGAGCCCTCGCCAACCCAAATTATTGAGAGTAATTTGCCACAGCAAGCAGGTTCATTTGATGTAATAAGTGGCGAAACTTGCCCGTTTATGAGAAATTCTCGGTCTATAGCAGAGTGGACGAAGATAAAAGCTGCTCTTTCTGGTGGTTCCAAGAAAAAAAAACAGAGACAATAGATCACTCAATATCAGAGGTACGTAACTCTTGAATCTTGCTTGAATGGGGGGCCATGATTGTATCTGAACTTAACTTGGTTTCATCTACTTAGGAACAGTTTGATGCAGCTTTGAGTAGGTTTATGTTTATGATTAGGCTGAAGATAGGGCTCTTGGAAATATTTTGCCTAAATGGTAATTTCATTTATGCATACACAAATAAGACTGAATCTTGTTTTGATTAATTCTAAATTATCGCTTTTTTTTTTTTGACCCCATATTAATAGTTGTATTTCTTCTTATCTATAGTATTAGGACTGAGTTTGGGATGACTTTAGCAAAGATGAAAAGTGCTTTCAGCCCATTAAAATTATTTCTGAAAATTTTCATATTGTTTGATTCGATAATCATAAGTGACTAAAAAAAACAGTAGAAGTAAATTTTTATTATTTATTTATTATTATTATTGTTATTTTTTTTTTCTCTATGAAAACAACTACTTTCATTGGAAAAAATAAAATACACGGGCATAAAATGAAAGAATACTTGGTAGGTTCTTCATGGTCTTTCTCCCACCCAAAGAACCAAGTAAAGAGCCTCACCTTTTTAGGGATCTGAATCTTCCACAGAACCATAAAAATTGACATCCTTAAGGGAGAAGGGTCAACCAAAAATTGAAAGAAAGACTTGCACGAGAACCTTTCCAAAGGATTAGGGCTCCAAAATTTGACATCACTTCTCCCTCTTCTAAAGGAATGGAAAGAAAGGCATCACATCCGTCTCTTCCCTATCGGAAAGAGAACGATAGAAACTGAAGGAAAAGGAACAAGAACTCCTAGACCACACGAGAAACTTGGTGTTAAACTTTGAGAGTTCGTGTTTAATAAATTATTTAAAAAGTGTAATAAGTTTCTAAACTTTGCTCAATGAACATTAATAAACAAGAGTTTCAAGATTCAAAAAGCCTCAAACTATTTTACCACTTTAATAATAAACATTTACCTAACTCAACAAAAGAAACATTTTGGCATTAATAACCTTCAAGAGCTACTTCAAACTAAGCTTAGTGGTAAATAAAAGGCATAGTTTGAGAAAGGGCTAAGAGAGAATGAGTCAAATCCATGGTGGCCACTTACCTAGGATTTAATATCCAACAAGTTCCTTGACATCTAAATGTTATAGGGTTAGACCGGTAGCCTGTGAGATTAGTCGAGATGCGTGTAAGCTGGTCCGAATATTCATGGATGTTTTAAAAAAAATACTACTTCAAACTATTGAACATGTGTAATAAGACCAACACTAAGTTTCAAAATCAAGCAACACCAACTCTATCTTCAACTTACATAAAACTTTGTAATAAAAATATTAACTGCATTGAAAAGATTAGCCAGATTACAACACTAATCCAACTAGTTAGTTGGGAAGTCGTTGAGAGGTTTGTCAATCAGGGAGGGTCAGATATTGAGAATTTAAGGTTACATTGCAATAAATCCTTTTTGGTTAAATGGCTGTATCGTTTCTTCATTGAGCTTGAATCTTGTGGCATAGGATTGATGAGTCCTATCCTTTCAAATGGTTGTTAAAAGGGGTTAAAGGCACACATTAGAATATTTGGAAAGATATTTCTTTTGAGCTCTCTTCCTTCTCCCATTTTGTTCATTGTGATGCGGAAGAAGGTACAATAATGCATTTCTGGAAAGATTAGTGGGTGGGAAATAGATCTCTTTGCTTTCCATTTCTTCATTTATATAATTTACTTTTCCTTAAAGATTGTATGGTCTTTGTTTTCTTAACTTGGTCAGGGTCTTCTTTGGTTTTCATCCGAAATTATACTATAGACATTCTTTTGCATAGTCGGACCCCCTTCTTATAAAGGGATATCTCTTTTTGTGAGCTTGATTTTTTTATGCCCGTGCTTGTGTTCTTTCATTTTTTCTCAATGAAGGTGGTTGTTTCTATCCAAAAAAAAAAAAGGAAAAAAAAAAAAGGGAAACAACGGAGATTGCCTCTCTTTTGTCTTTGGTTGAGGAGGTTATTTTTAATTGTGGGAGAAGGGATATTCGTGTTTGTAGTCCTAATTCTTTAGAGGGTTTCTTTTCCAAGTCCTTTCGGTTGTTGGATCCTTCCCCTGCTAGCGAGTCAGACTTTGATGTGTTGTGGAGGATTAAGATTCTGAAGAAAGTTAAGTTCCTTACCAGGTAAGTTTGGATAGGCTTTCGAGGAAGATGCCCTTGTTCATGAGCTCTTTTTGTTGTATTTTTTGTTGGAAGGTGGAGGAAGAATTGGATAACACGCTAGAGTTGTAAGCAAGGTTTGTGTGGAACTGCTTCTTTCAAGAGTTCAAGAGAGCTTAGTAGAGGGATATTAGAGTGATGATTGGGGAGTTTCTCCTCTATTCGCCTTTCAGAGAAAAAAGGCGTGACTTGTGGTTTGCAGGGGTGTTAATGTCTATTAATTAAATAAAAATAATTATGAAGTAAAGTTTTAAATTTATTTTTAATAGTGATGAAAAATAATGGAACTTAATTAGTTATATTTCTTTAAATTCTTTTAAATTAATTAATAGACATTAACACTAAAGACGAAATAAAGTATTTAGTGAACAATTGAGGTTAAAAGTGTAATTCTTGAAACTTAAGGACCAAATTGAAACAAACTTTAAATTTAAGGGTAAAATTGTAACATTTTGAAACCTTAAGGTTAAATTGAAACCAAACTCAAATCTTAAGAACTAAAAATGTAACATTTTGAAACCAATAGACCAAATAGATACTAGACCCAAAACCTAGGGACCAAAAAAGTAAAATTTCCATTATTTAATTATAACTAGTTTTGTAGAAGTGTTATAAATCATGTTATTTGGTTCCATATTTAGTGGAAGAATTTTTTAATATGAAATAATGGCCTTTTAAAAAGAAAGAGCAATTGCAATGGGTAGTAGTCTTAGGGCTAATAATTAAGTGTATAACAACATTTGTAAATAATTGCAAATATAGACAATTTATTAGTGATAGACTCTATCGTTGATAGACTTCTATTAATGATGGACTCTGTTGCTGATAGACTCTTATTAGCGATATATCAGCACAACGATAGAGTCTATTACTGATAGACTTCGAAAGTTGGATTTAAATTTTACTAATATATGCAAATTCGTTTGCATTGTGCTATGTTTGCTAATACTTTGAGCGATTGCTATATTTGCAATTACCCCAAAAAGAAACCACTCACGATCCCATAACAAAATTCACTTGGAAATCACTCTCTAAGTGATTTTTTTTCCCGATTAAACAACTGCTTTCATTGAGAAAAAAAAATGAAACAATACAATAACATACAAAAAACCAAGCTTGCCAAAACCCCTAAAGAAAGAGTTTCCAACTAAGTAAGATATTACCTAGGGAATAATTTCATAAAGTCTAGGAAATCGAACCCAAAGAGTCTTCAAAAAGCCTGCAAAAACCCCTAAAGATCAATGTTGAGTGGAATTTCTATCTATTGCCTCTCTCTTTTCTAGGTTCCTGTTTTGGTTTGTAAGAGCATGGAGAAGCTCACGAGAGACTTCTATGAGCCTTCCTCTGGGAAGAGGTAGAAGAAGGGAGGGGTTCTTATTTGGTTAGCTGGGAAGTGGTAGGGAATTTTGTGAACGAGGGAGGCTTGGTAATTCAAGGTTATGCAACAAAGCTCTGTTAACTAGATGACTTTGGTGTTTTGCCTTGAGTTTGAATCCTTATGGCACAAGATTACTGTGGGTAAATACAACTCCCATCATCCCTCTATATGGCTGGCGAAAGAGGCTAAAGGCACACTGCACACATCAAAGTCTTTGGAAAGATATTTCTTTTGATCACCTCCCAATGGATTGACTGGGAATAACTTTCTCATCATTTCCAAACATCATAATTTAAGAAAAAATAGTAATTTTGGTCATTCAAAATTATTCCTAAATATGCCCTAAATGACCACTCTAGATAATATATTTCATATAAAAAAAGGGTAAAATGCACTTTTGGTTCTTGAAATTTGTTGTTAATGTCTATTTGTGACACTTTAATCTTGAGATTTGGAAAATAGTTATAAGTGGGTACATTTATCAACTACGGCCTATTTTGCCGCTTATTTAGCTTTTTGTAATCCCCTTAAGATTTGTAATCCACAAAGGGCACTTGCTCCTATTTTTAGTCATCTGTTATGTATTTGATACAGTGTGTAGATATTTGTTCTAAAAAATGAATAAAGTTTGCCAAAATTTTTTATGAGATTTTATTATTGATATTTAGTTTGTTAAAGTTTACTAGAAATTTTTGTATCAACAACTCAAAATTAAAGTCAACACATACATCAGGTTTCCTGTTCAGCTGCTATTGCTCATCGTCGCCATTCTCTGCAAATCCTATATTGACTACCGCTCACAATCCTTCTCTCGTCATTGCCGTCTTCTGATTTTTGTTCACAAATGTGGGAAATGTTCTCAAATTTGTGGGAAGAAACAAATCTGAGAATCATTCCCTAAGATATGGCATGGAAATCTTCCATGTAGTGGTCGTGGCCTCCATCTGTATCATTCTTTCCATCATTATTTCCATTGGCGGCGCAAGTGTAAGACGGTGAAGAAGGCTCTGTTTTTTTTGTTTTTGTTTTTTTAATATTTAATGTTTCTTTTTTAGGAGAAGTCTCGTGGAAAGAAAAAGATGAAAATATTAATAAATAAAAAAAGCCACATAAGTTTAATTTAATTAAAAAAAGGAAAAATATTCACT

mRNA sequence

TATTTCTTCACTTTCCGCTAAGAGGGCTTTTTGCCCTGAAAATTTGAGCCAAAAACTATCTGCGAAGTGCATTTGGGCGACTATTGGAAACCTGGAACTTCAAACTCTAGTAAGAAGAAGAAGAAGAAACAAGAAAAGCCATGGAAAAAGAAGAAAGCTCCTCGGAAAAGATGAGAATTTACGTCGGAGGACTGGGTGCCGCCATGACCGAAGACGATCTCAGAAAGGTTTTTCAGAGCGTCGGCGGTGTAGTGGAGGCCGTCGATTTCGTTCGTACCAAATCTCGCAGCTTCGCTTATGTCGACTTCTTTCCGTCGTCCCAATCTTCCCTCTCCAAACTTTTCAGCACTTACAATGGATGTGCTTGGAAAGGAGGAAAGTTAAGGCTTGAGAAAGCCAAGGAAAGTTATCTTGCTCGTTTGAGGCGGGAATGGGAGGAAGATGCTCAAATTATGGATGATAATGTTGGTGTAGACATGGAGGTTGTTGCTCCAGAATCTACTAAGCATGTCACCAAGTCGGAGCACATTCAGATTTTCTTTCCAAGCTTAGGAGAGGTGAAGTCTTTGCCAATTAGTGGAACAGGGGCTCACAAATACGACTTTCCACATGTTGAGGTGCCTCCTCTTCCTGTGCATTTTTGTGACTGTGAAGAGCATAATGTTTCTGCTCCCATTGGCAATTCCAAGGAGACAAAAACAAGAGATTTGAATGCTGAGAATGGTGGAATGGATGAAGATGAAATCAAGATGATGAATGCAGTGTTGATCAAGCTCTTTGAGAGGCAAGAAGCTTCTCCATCTAATTGTAATGAGACCATGGCACTCAATGATAAGCACGACTCTACGAAATTGACTGATAATCAACCACTTGAAGATAATAAAGTGGACAGTGATGAAGATAACCTTGTGCTTAATGTGATGGCTAGTAACTGCAATTCCAGAACTATGCCATTGAACAGTGGAAATAAAAGCTTCAAAGCTCATGGGAACAGTAAGGTTAAGAATCATGCCACCATCGCCACAATTACTATTCTATCTATTTTTTTTATTGAGAGGCCATTTTTATTACAAGGGTTTGTTGCAGGTGCGGCCAGGGACCAGAAAAATAATAGTAGAGTTCAAAGCAAAGAAAGGAAATCTATTATTAGTGAGGAATTTGATGGGAATGAATCTGTACTCAGCATCTCTACCAGCTATGGGGGCACTGATCCATCATATGATCCAGCTAGTTCCTCAAGACCTCAAGCTCCTGATCGAGGTCCACAGATTCAATCTTCACGTTCTCAGAAATCTTCATGGAAAACACTTATTCGTGATAAGAGTAGTGTTTCATTTAGCATTTCAGACATACTGCCTTCAGTTCCTTCGGCAAATGAAGAGCAAGCAGAAGCAGATGATCATAGTCTAGCTCATTCAATTCCTAACAGAAATAGTGACCTTACAACTGCTACGGTATTGGGAAGCACAACAAATGGAATTCAGTCTGGAAAAATCAATGCTTCTTTCAGCATTACAAATGTGCTGCCTTCGGTTCCTTCAGCAGATCAAGAGGAAGATGCTTCTGCTGATCTGAATCTAGCTCATTCAACTCCTAACAGAAATACTGACATTGCAGCTGACCCAGTATCGAAAAGTAAATCAGAAGAAATGAAATCTGTGGAGAGCTTCCCAGAAGCCCAGTGTACCGTTCCAAATGTCACATTGAATAAAGGCAGAGGTTCTTCATGGCGGCAAAAATCTTCTTGGACGCAATTGGTCAGTGAGGAAATTACCTCCTTCAGTATTACACAAATTTTACCAAATAATACTTATGAAAAGCAGGTACAAGGGGAATTTGATGCTACCGATGTTAATCTCGCTGCTCGGAGTGAAAGTAATGCTTCGAAAAAGCAGGACAGTCAATGTATAGCTGAAGATGAGTCTGCTGCATTTGTTATTCAAAAAGACGAAATTGCCTGGAATGATGTCAAGAAGACTGAACCACCAGTAGTGCAAGAGTGTGAGCCCTCGCCAACCCAAATTATTGAGAGTAATTTGCCACAGCAAGCAGGTTCATTTGATGTAATAAGTGGCGAAACTTGCCCGTTTATGAGAAATTCTCGGTCTATAGCAGAGTGGACGAAGATAAAAGCTGCTCTTTCTGGTGGTTCCAAGAAAAAAAAACAGAGACAATAGATCACTCAATATCAGAGGTTTCCTGTTCAGCTGCTATTGCTCATCGTCGCCATTCTCTGCAAATCCTATATTGACTACCGCTCACAATCCTTCTCTCGTCATTGCCGTCTTCTGATTTTTGTTCACAAATGTGGGAAATGTTCTCAAATTTGTGGGAAGAAACAAATCTGAGAATCATTCCCTAAGATATGGCATGGAAATCTTCCATGTAGTGGTCGTGGCCTCCATCTGTATCATTCTTTCCATCATTATTTCCATTGGCGGCGCAAGTGTAAGACGGTGAAGAAGGCTCTGTTTTTTTTGTTTTTGTTTTTTTAATATTTAATGTTTCTTTTTTAGGAGAAGTCTCGTGGAAAGAAAAAGATGAAAATATTAATAAATAAAAAAAGCCACATAAGTTTAATTTAATTAAAAAAAGGAAAAATATTCACT

Coding sequence (CDS)

ATGGAAAAAGAAGAAAGCTCCTCGGAAAAGATGAGAATTTACGTCGGAGGACTGGGTGCCGCCATGACCGAAGACGATCTCAGAAAGGTTTTTCAGAGCGTCGGCGGTGTAGTGGAGGCCGTCGATTTCGTTCGTACCAAATCTCGCAGCTTCGCTTATGTCGACTTCTTTCCGTCGTCCCAATCTTCCCTCTCCAAACTTTTCAGCACTTACAATGGATGTGCTTGGAAAGGAGGAAAGTTAAGGCTTGAGAAAGCCAAGGAAAGTTATCTTGCTCGTTTGAGGCGGGAATGGGAGGAAGATGCTCAAATTATGGATGATAATGTTGGTGTAGACATGGAGGTTGTTGCTCCAGAATCTACTAAGCATGTCACCAAGTCGGAGCACATTCAGATTTTCTTTCCAAGCTTAGGAGAGGTGAAGTCTTTGCCAATTAGTGGAACAGGGGCTCACAAATACGACTTTCCACATGTTGAGGTGCCTCCTCTTCCTGTGCATTTTTGTGACTGTGAAGAGCATAATGTTTCTGCTCCCATTGGCAATTCCAAGGAGACAAAAACAAGAGATTTGAATGCTGAGAATGGTGGAATGGATGAAGATGAAATCAAGATGATGAATGCAGTGTTGATCAAGCTCTTTGAGAGGCAAGAAGCTTCTCCATCTAATTGTAATGAGACCATGGCACTCAATGATAAGCACGACTCTACGAAATTGACTGATAATCAACCACTTGAAGATAATAAAGTGGACAGTGATGAAGATAACCTTGTGCTTAATGTGATGGCTAGTAACTGCAATTCCAGAACTATGCCATTGAACAGTGGAAATAAAAGCTTCAAAGCTCATGGGAACAGTAAGGTTAAGAATCATGCCACCATCGCCACAATTACTATTCTATCTATTTTTTTTATTGAGAGGCCATTTTTATTACAAGGGTTTGTTGCAGGTGCGGCCAGGGACCAGAAAAATAATAGTAGAGTTCAAAGCAAAGAAAGGAAATCTATTATTAGTGAGGAATTTGATGGGAATGAATCTGTACTCAGCATCTCTACCAGCTATGGGGGCACTGATCCATCATATGATCCAGCTAGTTCCTCAAGACCTCAAGCTCCTGATCGAGGTCCACAGATTCAATCTTCACGTTCTCAGAAATCTTCATGGAAAACACTTATTCGTGATAAGAGTAGTGTTTCATTTAGCATTTCAGACATACTGCCTTCAGTTCCTTCGGCAAATGAAGAGCAAGCAGAAGCAGATGATCATAGTCTAGCTCATTCAATTCCTAACAGAAATAGTGACCTTACAACTGCTACGGTATTGGGAAGCACAACAAATGGAATTCAGTCTGGAAAAATCAATGCTTCTTTCAGCATTACAAATGTGCTGCCTTCGGTTCCTTCAGCAGATCAAGAGGAAGATGCTTCTGCTGATCTGAATCTAGCTCATTCAACTCCTAACAGAAATACTGACATTGCAGCTGACCCAGTATCGAAAAGTAAATCAGAAGAAATGAAATCTGTGGAGAGCTTCCCAGAAGCCCAGTGTACCGTTCCAAATGTCACATTGAATAAAGGCAGAGGTTCTTCATGGCGGCAAAAATCTTCTTGGACGCAATTGGTCAGTGAGGAAATTACCTCCTTCAGTATTACACAAATTTTACCAAATAATACTTATGAAAAGCAGGTACAAGGGGAATTTGATGCTACCGATGTTAATCTCGCTGCTCGGAGTGAAAGTAATGCTTCGAAAAAGCAGGACAGTCAATGTATAGCTGAAGATGAGTCTGCTGCATTTGTTATTCAAAAAGACGAAATTGCCTGGAATGATGTCAAGAAGACTGAACCACCAGTAGTGCAAGAGTGTGAGCCCTCGCCAACCCAAATTATTGAGAGTAATTTGCCACAGCAAGCAGGTTCATTTGATGTAATAAGTGGCGAAACTTGCCCGTTTATGAGAAATTCTCGGTCTATAGCAGAGTGGACGAAGATAAAAGCTGCTCTTTCTGGTGGTTCCAAGAAAAAAAAACAGAGACAATAG

Protein sequence

MEKEESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSSQSSLSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEEDAQIMDDNVGVDMEVVAPESTKHVTKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEVPPLPVHFCDCEEHNVSAPIGNSKETKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTDNQPLEDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILSIFFIERPFLLQGFVAGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSYDPASSSRPQAPDRGPQIQSSRSQKSSWKTLIRDKSSVSFSISDILPSVPSANEEQAEADDHSLAHSIPNRNSDLTTATVLGSTTNGIQSGKINASFSITNVLPSVPSADQEEDASADLNLAHSTPNRNTDIAADPVSKSKSEEMKSVESFPEAQCTVPNVTLNKGRGSSWRQKSSWTQLVSEEITSFSITQILPNNTYEKQVQGEFDATDVNLAARSESNASKKQDSQCIAEDESAAFVIQKDEIAWNDVKKTEPPVVQECEPSPTQIIESNLPQQAGSFDVISGETCPFMRNSRSIAEWTKIKAALSGGSKKKKQRQ

Homology

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BLAST of Lsi06G006640 vs. Swiss-Prot
Match: NOL8_MOUSE (Nucleolar protein 8 OS=Mus musculus GN=Nol8 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-07
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 1


Query: 5   ESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVR-----TKSRSFAYVDFFPS 64
           + + E  R++VGGLG  ++E DL+  F   G V +     R        + FAYV+    
Sbjct: 2   QGNREMKRLFVGGLGQGISETDLQNQFGRFGEVSDVEIITRKDDQGNSQKVFAYVNI-QI 61

Query: 65  SQSSLSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEE 101
           +++ L K  S  N   WKGG L+++ AKES+L RL +E E+
Sbjct: 62  TEADLKKCMSILNKTKWKGGTLQIQLAKESFLHRLAQERED 101

[Close]

BLAST of Lsi06G006640 vs. Swiss-Prot
Match: NOL8_HUMAN (Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-07
Identity = 41/130 (31.54%), Postives = 63/130 (48.46%), Query Frame = 1


Query: 9   EKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRS-----FAYVDFFPSSQSS 68
           E  R+YVGGL   ++E DL+  F   G V +     R   +      FAY++    +++ 
Sbjct: 6   ETKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINI-SVAEAD 65

Query: 69  LSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEE-----------DAQIMDDNVGVD 123
           L K  S  N   WKGG L+++ AKES+L RL +E E            +A +++   GVD
Sbjct: 66  LKKCMSVLNKTKWKGGTLQIQLAKESFLHRLAQEREAAKAKKEESTTGNANLLEKTGGVD 125

[Close]

BLAST of Lsi06G006640 vs. TrEMBL
Match: A0A0A0LXQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651690 PE=4 SV=1)

HSP 1 Score: 1001.5 bits (2588), Expect = 4.9e-289
Identity = 536/686 (78.13%), Postives = 575/686 (83.82%), Query Frame = 1


Query: 1   MEKEESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60
           MEK +S+SE MRIYVGGLGAAMTEDDLRKVF SVGGVVEAVDFVRTKSRSFAYVDFFPSS
Sbjct: 1   MEKGQSASENMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60

Query: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEEDAQIMDDNVGVDMEVVAPES 120
           QSSLSKLFSTYNGCAWKGGKLRLEKAKE+YLARL REWEEDAQI D+NVG DME+VAPES
Sbjct: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKENYLARLNREWEEDAQIRDNNVGADMELVAPES 120

Query: 121 TKHVTKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEVPPLPVHFCDCEEHNVSAPIG 180
           T+HVTKSEHI IFFPSLGEVK LPISGTG HKYDFPHVEVPP PVHFCDCEEHN S+PIG
Sbjct: 121 TEHVTKSEHINIFFPSLGEVKPLPISGTGTHKYDFPHVEVPPFPVHFCDCEEHNASSPIG 180

Query: 181 NSKETKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTD 240
           NSK TKTRDLNAENGGMDEDEIKMMNAVL KLFER+EAS SNCN++MALNDKH+ST  TD
Sbjct: 181 NSKYTKTRDLNAENGGMDEDEIKMMNAVLSKLFERKEASQSNCNDSMALNDKHNSTTSTD 240

Query: 241 NQPLEDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILS 300
           NQ LEDNKVDSDEDNLVLNVMASNCNS+TM LN GNK FKAHGNSK              
Sbjct: 241 NQLLEDNKVDSDEDNLVLNVMASNCNSKTMALNRGNKIFKAHGNSK-------------- 300

Query: 301 IFFIERPFLLQGFVAGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSY 360
                           A RDQKNN RVQSK+RKS ISEEFDGNESV SI TS  GTDPSY
Sbjct: 301 ---------------DAVRDQKNNCRVQSKKRKSFISEEFDGNESVPSIFTSNRGTDPSY 360

Query: 361 DPASSSRPQAPDRGPQIQSSRSQKSSWKTLIRDKSSVSFSISDILPSVPSANEEQAEADD 420
           DPA SSRPQAPDRGP +QS RSQKSSWKTLIRDKS+VSF ISDIL SVPSANEE+AEADD
Sbjct: 361 DPARSSRPQAPDRGPPVQSLRSQKSSWKTLIRDKSNVSFCISDILSSVPSANEEKAEADD 420

Query: 421 HSLAHSIPNRNSDLTTATVLGSTTNGIQSGKINASFSITNVLPSV--------PSADQEE 480
            ++AHS PNRNS+L +  VLGS  + IQSGKIN  FSIT+VLP V         SADQE+
Sbjct: 421 LNIAHSTPNRNSNLASTAVLGSEIDEIQSGKINVPFSITDVLPLVLSADQEKAASADQEK 480

Query: 481 DASADLNLAHSTPNRNTDIAADPVSKSKSEEMKSVESFPEAQCTVPNVTLNKGRGSSWRQ 540
            ASADLNLAHSTPN NTD+ ADP+SKSKSEEM+SVESF +AQCTVPNVTLNKGRGSSWR+
Sbjct: 481 AASADLNLAHSTPNINTDVGADPISKSKSEEMESVESFQDAQCTVPNVTLNKGRGSSWRK 540

Query: 541 KSSWTQLVSEEITSFSITQILPNNTYEKQVQGEFDATDVNLAARSESNASKKQDSQCIAE 600
           KSSWTQLVSEE TSFSITQILPN+T E QVQGE    + N +A SE+NA +KQDS+CIA+
Sbjct: 541 KSSWTQLVSEEFTSFSITQILPNSTSENQVQGESGDINANFSAWSETNAPRKQDSECIAK 600

Query: 601 DESAAFVIQKDEIAWNDVKKTEPPVVQECEPSPTQIIESNLPQQAGSFDVISGETCPFMR 660
           DES AFVI K EI  NDVK+ EP  VQECE  PTQI ESN PQQ GSFD ISG+TCPFMR
Sbjct: 601 DESTAFVIGKGEIGCNDVKQNEPQAVQECETCPTQITESNFPQQEGSFDEISGDTCPFMR 657

Query: 661 NSRSIAEWTKIKAALSGGSKKKKQRQ 679
           NS+S+AEWTKIKAALSGGSKKKKQRQ
Sbjct: 661 NSQSVAEWTKIKAALSGGSKKKKQRQ 657

[Close]

BLAST of Lsi06G006640 vs. TrEMBL
Match: A0A061GQW7_THECC (RNA-binding family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_039820 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.5e-80
Identity = 247/706 (34.99%), Postives = 370/706 (52.41%), Query Frame = 1


Query: 6   SSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSSQSSLS 65
           +++   RI+VGGLG +++ DDLRKVF +VG  VE +D +R K RSFAYVD  PSS +SLS
Sbjct: 2   AATASTRIHVGGLGQSVSSDDLRKVFSAVG-TVEGLDIIRAKGRSFAYVDILPSSSNSLS 61

Query: 66  KLFSTYNGCAWKGGKLRLEKAKESYLARLRREW-EEDAQIMDDNVGVDMEVVAPESTKHV 125
           KLF+TYNGC WKGGKL+L KAKE YL RL+REW +E+ +     +    +     +  HV
Sbjct: 62  KLFNTYNGCVWKGGKLKLGKAKEHYLTRLKREWAKEEEEAHHQPMPSSSDEPYNGNKVHV 121

Query: 126 TKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEVPPLPVHFCDCEEHNVSAPIGNSKE 185
           ++  H++IFFP L  VKSLP+SGTG HKY F  VEV  LP+HFCDCEEH+        KE
Sbjct: 122 SQQGHLRIFFPRLTRVKSLPLSGTGKHKYSFQRVEVSALPIHFCDCEEHSGHFNAVRRKE 181

Query: 186 TKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTDNQPL 245
            +  +    NG M+E+E+ MM++V+ KLFER  A+ SN +  +  +++ D TKL +  PL
Sbjct: 182 GQNHE--EINGVMNEEEVSMMSSVMNKLFER--ANISNTSSAILADEREDFTKLIEG-PL 241

Query: 246 EDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILSIFFI 305
            D + ++D+D+L++NV++ + N   M   SG++  KA     V    T    T +S +  
Sbjct: 242 SDEE-ETDDDDLIINVVSDSNNRAAM---SGSREKKA-----VSTEKTGLGETHISNY-- 301

Query: 306 ERPFLLQGFVAGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSYDPAS 365
                  G +  A + Q+NN+    K+RK + ++E D ++ V         ++     A 
Sbjct: 302 -------GAIRSACKVQENNTLHPRKKRKPLPNKEEDKHQLVSLFHGQRRNSEFDDSNAD 361

Query: 366 SSRPQAPDRGPQIQ-SSRSQKSSWKTLIRDKSSVS--FSISDILPSV--PSANEEQAEAD 425
               +A +    I   S + K S +T + DK S+   F  S+   S   P  NE + + D
Sbjct: 362 FEENEANEDNLMINIVSMANKRSGRTKL-DKVSLKQRFKSSEKQTSEDGPIQNEHKVQKD 421

Query: 426 DHSLAHSIPNRNSDLTTAT-----VLGSTTNGIQSG----------------------KI 485
           D  L    PNRN      T     V+ + T G + G                      + 
Sbjct: 422 DILL----PNRNEKGNVQTQSNESVVVAQTTGAECGLKQSNTSCSWSQKSSWRALVGDRS 481

Query: 486 NASFSITNVLPSVPSADQEEDASADLNLAHSTPNRNTDIAADPVSKSK--SEEMKSVESF 545
           N++FS++N+L +V +  +++  S    +  +  +RN ++A     +      E+  VE  
Sbjct: 482 NSAFSLSNILQNVGTTKEKQQISDGCKVNKTLDSRNGNLAKPKNLEGMLGKTEIVDVEPQ 541

Query: 546 PEAQCTVPNVTLNKGRGSSWRQKSSWTQLVSEEITSFSITQILPNNTYEKQVQGEFDATD 605
           P    T  +   N GRGSSW  KSSW QLVSE  +SFSI++I+P +T +++         
Sbjct: 542 PNQPKTASS---NSGRGSSWLHKSSWMQLVSENSSSFSISEIVPGSTTKQECTKPIYEDV 601

Query: 606 VNLAARSESNASKKQDSQCIAEDESAAFVIQKDEIAWNDVKKTEPPVVQECEPSPTQIIE 665
           V  A  + SN +K   S+       A  V ++ +   +  +  +  VV   + S   + +
Sbjct: 602 VYSADGNHSNKTKSHKSEPTVYGSPALGVRKEGDTVRSIPESNQQTVVGNTDASVPTVEK 661

Query: 666 SNL-PQQAGSFDVISGETCPFMRNSRSIAEWTKIKAALSGGSKKKK 676
            N  P +A   D   GETC FMR+S S+ EW K KAAL G  KKK+
Sbjct: 662 CNSEPDKAFGGDTSIGETCSFMRSSASLKEWVKTKAALKGSRKKKR 675

[Close]

BLAST of Lsi06G006640 vs. TrEMBL
Match: A0A0D2QQG1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G023000 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.3e-75
Identity = 227/716 (31.70%), Postives = 357/716 (49.86%), Query Frame = 1


Query: 1   MEKEESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60
           M  + +++ + RI+VGGLG ++  DDLRK+F +VG  VE VD VRTK RSFAYVD  PS+
Sbjct: 1   MAADPTATTRTRIHVGGLGQSVNSDDLRKIFSAVG-TVEGVDIVRTKGRSFAYVDILPST 60

Query: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEEDAQIMDDNVGVDMEVVAPES 120
            +S+SKLFSTYNGCAWKGGKL+LEKAKE +L RL+REW E     + N G      +   
Sbjct: 61  SNSISKLFSTYNGCAWKGGKLKLEKAKEHFLIRLKREWAEAEAEDEANEGSHQAKPSSSD 120

Query: 121 TKH------VTKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEVPPLPVHFCDCEEHN 180
           + +      V+++  ++IFFP L ++KSLP SGTG H+Y F  VE    P+HFCDC EH 
Sbjct: 121 SNNSKNKVQVSQNNQLRIFFPRLSKIKSLPFSGTGKHRYSFQRVEALAFPLHFCDCAEH- 180

Query: 181 VSAPIGNSKETKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHD 240
            S      K+ + R     N GM+E+E+ +M++V+ KLFER+    SN +    + +++D
Sbjct: 181 -SGRFNAVKQKEVRRHEEINDGMNEEELSLMSSVMNKLFERENI--SNTSRPTIVKERND 240

Query: 241 STKLTDNQPLEDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIA 300
             +   + P  + + D D+D+L++NV+ SN N RT     G        + KV    T  
Sbjct: 241 FIEPVKDLPSNEEENDDDDDDLIINVV-SNANKRTAMSRIGE-------SKKVSTEKTRL 300

Query: 301 TITILSIFFIERPFLLQGFVAGAARDQKNNSRVQSKERK---------SIISEEFDGNES 360
           +         E      G +  A++ QK N+    K+RK         + +S +   N  
Sbjct: 301 S---------ENKVSKDGAIPSASKLQKKNALHAEKKRKPNRDDKHEITSLSSQLRMNSQ 360

Query: 361 VLSISTSYGGTDPSYDPASSSRPQAPDRGPQIQ-SSRSQKSSWKTLIRDKSSVSF----- 420
              I   +   D + D    +      +G  +  S++  K S K   +   + S      
Sbjct: 361 CDEIEAGFEEDDETDDDLVINVASTESKGKALSGSTKRAKVSPKQNFKPSETQSTENERE 420

Query: 421 -SISDILPSVPSANEEQAEADDHSLAHSIPNRNSDLTT------ATVLGSTTNGIQS--- 480
                +LP          E D +    ++P     L         ++  S+T+ + S   
Sbjct: 421 EKKDRLLPKKKMKLISTKERDGNEAVSTVPAEKGPLIAQMTEQDCSLKPSSTSCLWSQKS 480

Query: 481 -------GKINASFSITNVLPSVPSADQEEDASADLNLAHSTPNRNTDIAADPVSKSKSE 540
                  G+ +++FS++N+L +  +  +E+    D  + ++  ++N  ++     +  S+
Sbjct: 481 SWKALVGGRGDSAFSLSNILQNADTT-EEQHIFDDPKVDNTLDSKNDKLSTPENLEGMSD 540

Query: 541 EMKSVESFPEAQCTVPNVT-LNKGRGSSWRQKSSWTQLVSEEITSFSITQILPNNTYEKQ 600
           +M+   +  EAQ   P++T  N GRGSSW  KSSWTQLVS++  SFSI+QILP  T  ++
Sbjct: 541 KMEIANAIAEAQPNKPSMTSSNTGRGSSWLHKSSWTQLVSDKSNSFSISQILPGTTTSQE 600

Query: 601 VQGEFDATDVNLAARSESNASKKQDSQCIAEDESAAFVIQKDEIAWNDVKKTEPPVVQEC 660
           +        V  A  + +N   +  ++ + + +S              + KT P  ++  
Sbjct: 601 LAKPTGEDVVQSADGNYTNEMDRFTTEGVGQGDSV-----------ESIPKTSPQTLEGS 660

Query: 661 EPSPTQIIE--SNL-PQQAGSFDVISGETCPFMRNSRSIAEWTKIKAALSGGSKKK 675
             +    +E  SN  P +  + D  +G TC FMR+S S+ EW K KAAL G  KKK
Sbjct: 661 NNTSLPAVENISNFEPVKGFAVDTSTGGTCSFMRSSTSLKEWAKTKAALKGSRKKK 682

[Close]

BLAST of Lsi06G006640 vs. TrEMBL
Match: A0A161ZY97_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020445 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.2e-74
Identity = 249/742 (33.56%), Postives = 362/742 (48.79%), Query Frame = 1


Query: 1   MEK--EESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFP 60
           MEK  EE  ++  RIY+GGLG  +TEDD+RK F  +G V +AVD  RTK RSFAY+DF P
Sbjct: 1   MEKVEEEKGAQGTRIYMGGLGKIVTEDDIRKTFSGLGRV-DAVDIFRTKGRSFAYLDFVP 60

Query: 61  SSQSSLSKLFST-------------------------------YNGCAWKGGKLRLEKAK 120
           S++ SL KLFST                               YNGC WKGG+L+LEKAK
Sbjct: 61  SAEKSLPKLFSTVSLSLPIGPSPLYSLELHAYSGRAGSHRTGNYNGCMWKGGRLKLEKAK 120

Query: 121 ESYLARLRREWEEDAQIMDDNVG-VDMEVVAPESTK----HVTKSEHIQIFFPSLGEVKS 180
           E YL RL+REW++DA++++     VD+    P S K       +  +I+IFFP L ++KS
Sbjct: 121 EHYLLRLKREWDDDAKLINSAPSRVDISDSKPSSEKPKKLQALEKPNIRIFFPKLSKMKS 180

Query: 181 LPISGTGAHKYDFPHVEVPPLPVHFCDCEEHNVSAPIGNSKETKTRDLNAENGGMDEDEI 240
           LP  G+G HKY F  +EVPPLP+HFCDCEEH  S    + ++  T D    NGG+ E+E+
Sbjct: 181 LPFGGSGKHKYSFQRIEVPPLPIHFCDCEEHCNSF---HKEKGTTSDTETANGGIREEEL 240

Query: 241 KMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTDNQP-LEDNKVD-------SDED 300
            +M +V+ KLFER+        ++ A+ D+  ST+  D+ P + D  VD       SDE+
Sbjct: 241 SIMESVMKKLFERE-------TDSKAVADRGKSTEERDSLPEVIDIPVDEVISDPPSDEE 300

Query: 301 NLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILSIFFIERPFLLQGFV 360
           NL++N++A    S    L SGN++ K   ++K   H    T       F +RP      V
Sbjct: 301 NLIINIVAGGKESM---LLSGNQAQKTRPDNKELKHGRSNT-------FKDRP------V 360

Query: 361 AGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSYDPASSSRPQAPDRG 420
                 QK N    S +RK  ++E  +GNE   S+ T    + P        +   P   
Sbjct: 361 NSLHTSQKKNIESFSMKRKLPLAELSEGNERE-SLDTKKKKSLPVNSKGQEDQSTEPKAR 420

Query: 421 PQIQSSR---SQKSSWKTLIRDKSSVSFSISDILPSVPSANEEQAEADDHSLAHSIPN-- 480
           P    +    SQKS+WK LI  K +  F  S ++ S+ S  EEQ  +    L+ S     
Sbjct: 421 PPKSKNNIAWSQKSAWKDLIGKKGNTPFQFSSVVSSISSTKEEQPNSSSDKLSESFAKVK 480

Query: 481 --RNSDLTTATVLGSTTNGIQSGKINASFSITNVLPSVPSADQEEDASADLNLA--HSTP 540
             ++SD             I S K+    S   V+  +    +E+    DLN+    S  
Sbjct: 481 LPQSSDAAPT---------IASAKVEQPQSSRFVVGVIM---EEQTRPRDLNVISYSSDS 540

Query: 541 NRNTDIAADPVSKSKSEEMKSVESFPEAQCTVPNVTLNKGRGSSWRQKSSWTQLVSE-EI 600
            +   +  +P S++   + K     P A  +  +V++   RG SWRQKSSWTQLV++   
Sbjct: 541 EKQNTLHGNPESETMQSKEKQGAEAP-ALASPNDVSITTARGVSWRQKSSWTQLVADANK 600

Query: 601 TSFSITQILPNNTYEKQVQGEFDATDVNLAARSESNASK------------------KQD 660
            SFSI+Q++P  ++E Q   + + TDV   A   SNA                    K  
Sbjct: 601 NSFSISQVIPGLSFETQ-PSQPNLTDV---AADTSNAEHQNLLKLNELENTGHGLEVKDR 660

Query: 661 SQCIAEDESAAFVIQKDEIAWNDVKKTEPPVVQECEPSPTQIIESNLPQQAGSFDVIS-G 668
           S  +A     A  + K  +   D +K++   V     +    I + LP       +   G
Sbjct: 661 SVHVAPSNFDAISLSKSTV---DSEKSKASTVLGKREATALKINNRLPLIRKPISIADFG 694

[Close]

BLAST of Lsi06G006640 vs. TrEMBL
Match: V4KX69_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10012942mg PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.8e-74
Identity = 248/710 (34.93%), Postives = 358/710 (50.42%), Query Frame = 1


Query: 11  MRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSSQSSLSKLFST 70
           +R++VGGLG ++ +DDL K+F  +G V ++V+FVRTK RSFAY+DF PSS  SL+KLFST
Sbjct: 10  VRLHVGGLGESVGKDDLLKIFSPMGSV-DSVEFVRTKGRSFAYIDFSPSSDKSLTKLFST 69

Query: 71  YNGCAWKGGKLRLEKAKESYLARLRREWEEDAQIMDDNVGVDMEVVAPESTKHVTKSEHI 130
           YNGC WKGGKLRLEKAKE YLARLRR WEE A   DD +       APE     T S  I
Sbjct: 70  YNGCIWKGGKLRLEKAKEHYLARLRRGWEESASTPDDTIK------APEK---FTPSTQI 129

Query: 131 QIFFPSLGEVKSLPISGTGAHKYDFPHVEVPP-LPVHFCDCEEHNVSAPIGNSKETKTRD 190
            IF P L +VKSLP+SGTG HKY F  V VP  LP  FCDCEEH+ S      +ET  RD
Sbjct: 130 NIFIPRLRKVKSLPLSGTGKHKYSFQRVSVPSSLPKTFCDCEEHSASL---TPRETHVRD 189

Query: 191 LNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTDNQPLEDNKV 250
           L A N G++E+E+ +MN+V+ KLFE  +   ++ N+ + LND +D               
Sbjct: 190 LEALNVGINEEEVNIMNSVMSKLFENNDNDNNDNNDNLILNDNND--------------- 249

Query: 251 DSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILSIFFIERPFL 310
                NL++NV+++  +     L+  ++  K+       N A+ A               
Sbjct: 250 -----NLIINVVSNGNDMMDSELDILSRKRKS-----TLNEASGA--------------- 309

Query: 311 LQGFVAGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSY--GGTDPSYDPASSSR 370
             G++ G    +K N+    K+R+SII E+    ES  +IS        DP+      SR
Sbjct: 310 --GYIEG----RKGNNVHPKKKRQSIILEKNGRQESSQTISEKKKPSEVDPNKSTDEPSR 369

Query: 371 PQAPDRGPQIQSSRSQKSSWKTLIRDKSSVSFSISDILPSVPSANEEQAEADDHSLA--- 430
                R      S SQKSSWK L+ + +S  F++S  LP V S    Q+ + +  LA   
Sbjct: 370 KIGVKRSTD-NISWSQKSSWKALVANGNSNHFTVSSFLPGVGSNKAVQSASGNTDLAGLP 429

Query: 431 -------HSIPNRNSDLTTATVLGST-----TNGIQSGKINASFSI--TNVLPSVPSADQ 490
                    +PN +++  T T +  T     T+ I +  + A   I   +++  +    +
Sbjct: 430 SQENSEEFDVPN-STERPTVTKIKKTKRKRITSTIIAENVAAEDDIEKNDIVTDISVEAE 489

Query: 491 EEDASADLNLAHSTPNRNTD--IAADPVSKSKSEEMKS-----VESFPEAQCTVPNVTLN 550
             +AS + +  +   N  TD  +A D  ++ +S ++K      V+     + ++   + +
Sbjct: 490 PLEASTENDCENDNLNVETDENVAEDLNAEKESLDLKDNVDHDVDKDEAGKASLEARSKS 549

Query: 551 KGRGSSWRQKSSWTQLVSEEITSFSITQILPNNTYEKQVQGEFDATDVNLAARSESNASK 610
            G GSSW Q++SWTQLVS+   SFSITQ+ P+            A+D N AAR  +N   
Sbjct: 550 TG-GSSWLQRASWTQLVSDRSASFSITQLFPDL-----------ASDKNEAARVNNNG-- 609

Query: 611 KQDSQCIAEDESAAFVIQKDEIAWNDVKKTEPPVVQECEPSPTQIIESNLPQQAGS---- 670
             D Q    ++S + + Q+D          E   VQ  + +P + +E N     G     
Sbjct: 610 --DGQFSNFNQSESGMKQRDNSC--STASFEAAGVQ-VDSTPVRSLEENRQSLKGKNVRE 639

Query: 671 -----------FDVISGETCPFMRNSRSIAEWTKIKAALSGGSKKKKQRQ 679
                        + SGETC FMR++ S+ EW K K ALS   +KKK  +
Sbjct: 670 GCKLAAKMPIRRKIGSGETCTFMRSATSLKEWAKAKKALSEPRRKKKSEE 639

[Close]

BLAST of Lsi06G006640 vs. TAIR10
Match: AT5G58130.1 (AT5G58130.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 226.9 bits (577), Expect = 3.8e-59
Identity = 179/498 (35.94%), Postives = 256/498 (51.41%), Query Frame = 1


Query: 3   KEESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSSQS 62
           +E+SS   +R++VGGLG ++  DDL K+F  +G  V+AV+FVRTK RSFAY+DF PSS +
Sbjct: 2   EEKSSGGGVRLHVGGLGESVGRDDLLKIFSPMG-TVDAVEFVRTKGRSFAYIDFSPSSTN 61

Query: 63  SLSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEEDAQIMDDNVGVDMEVVAPESTK 122
           SL+KLFSTYNGC WKGG+LRLEKAKE YLARL+REWE  +   D+ +       AP  + 
Sbjct: 62  SLTKLFSTYNGCVWKGGRLRLEKAKEHYLARLKREWEAASSTSDNTIK------APSDSP 121

Query: 123 HVTKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEV-PPLPVHFCDCEEHNVSAPIGN 182
             T   H+ IFFP L +VK +P+SGTG HKY F  V V   LP  FCDCEEH+ S+    
Sbjct: 122 PAT---HLNIFFPRLRKVKPMPLSGTGKHKYSFQRVPVSSSLPRSFCDCEEHSNSSL--T 181

Query: 183 SKETKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTDN 242
            +E    DL A N G  E E+ +MN+V+ KLFE+    P                     
Sbjct: 182 PREIHLHDLEAVNVGRQEAEVNVMNSVMNKLFEKNNVDPE-------------------- 241

Query: 243 QPLEDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILSI 302
              EDN++++D+DNL++NV AS+ N     L+  ++  K+  N K  +            
Sbjct: 242 ---EDNEIEADQDNLIINV-ASSGNDMDSALDMLSRKRKSILNKKTPSE----------- 301

Query: 303 FFIERPFLLQGFVAGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSYD 362
                    +G+  G   +  + S+ +      I  EE    ES  +I      ++   D
Sbjct: 302 ---------EGYSEGRKGNLTHPSKNRQT----ISLEETGRQESSQAIRGKKKPSEVVPD 361

Query: 363 PASSSRPQAPDRGPQIQS-SRSQKSSWKTLIRDKSSVSFSISDILPSVPSANEEQAEADD 422
            +S    +  D    I + S SQKSSWK+L+ + +S  FS+S  LP V S+   Q    +
Sbjct: 362 KSSDEPSRTKDLEQSIDNISWSQKSSWKSLMANGNSNDFSVSSFLPGVGSSKAVQPAPRN 421

Query: 423 HSLAHSIPNRNSDLTTATVLGSTTNGIQSGKINASFSITNVLPSVPSADQEEDASADLNL 482
             LA  +P+R  +L   T     T+ I +  +  S  I        + D E D S  +  
Sbjct: 422 TDLA-GLPSR-ENLKKKTKRKRVTSTIMAEDLPVSDDIKRDDSDTMADDIERDDSDAVEY 437

Query: 483 AHSTPNRNTDIAADPVSK 499
             +  +   D A+D V++
Sbjct: 482 YTACESMADDTASDSVAE 437

[Close]

BLAST of Lsi06G006640 vs. NCBI nr
Match: gi|659085871|ref|XP_008443653.1| (PREDICTED: uncharacterized protein LOC103487200 [Cucumis melo])

HSP 1 Score: 1031.9 bits (2667), Expect = 4.9e-298
Identity = 548/678 (80.83%), Postives = 584/678 (86.14%), Query Frame = 1


Query: 1   MEKEESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60
           ME+ +S+SEKMRIYVGGLGAAMTEDDLRKVF SVGGVVEAVDFVRTKSRSFAYVDFFPSS
Sbjct: 1   MERGQSASEKMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60

Query: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEEDAQIMDDNVGVDMEVVAPES 120
           QSSLSKLFSTYNGCAWKGGKLRLEKAKE+YLARL+REWEEDAQI D NVG DMEVVAPES
Sbjct: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKENYLARLKREWEEDAQIRDSNVGADMEVVAPES 120

Query: 121 TKHVTKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEVPPLPVHFCDCEEHNVSAPIG 180
           T+HVTKSEHI IFFPSLGEVKSLPISGTG HKYDFPHVEVPP PVHFCDCEEH+VS+PIG
Sbjct: 121 TQHVTKSEHINIFFPSLGEVKSLPISGTGTHKYDFPHVEVPPFPVHFCDCEEHDVSSPIG 180

Query: 181 NSKETKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTD 240
           NSK+TKTRDLNAENGGM EDEI+MMNAV+ KLFER+EAS SNCN +MALNDKH+ST LTD
Sbjct: 181 NSKDTKTRDLNAENGGMAEDEIEMMNAVMNKLFEREEASQSNCNGSMALNDKHNSTMLTD 240

Query: 241 NQPLEDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILS 300
           NQ LEDNKVD DEDNLVLNVMASNCNS++M LNSGNK FKAHGNSK              
Sbjct: 241 NQLLEDNKVDCDEDNLVLNVMASNCNSKSMALNSGNKIFKAHGNSK-------------- 300

Query: 301 IFFIERPFLLQGFVAGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSY 360
                           A RDQKNN RVQ K+RKS +SEEFDGNESV SI TS GGTDPSY
Sbjct: 301 ---------------DAVRDQKNNCRVQGKKRKSFLSEEFDGNESVPSIFTSNGGTDPSY 360

Query: 361 DPASSSRPQAPDRGPQIQSSRSQKSSWKTLIRDKSSVSFSISDILPSVPSANEEQAEADD 420
           DPA SSRPQAPDRGP +QS RSQKS WKTLIRDKS+VSF ISDIL SVPSANEE++EADD
Sbjct: 361 DPARSSRPQAPDRGPPVQSLRSQKSLWKTLIRDKSNVSFCISDILCSVPSANEEKSEADD 420

Query: 421 HSLAHSIPNRNSDLTTATVLGSTTNGIQSGKINASFSITNVLPSVPSADQEEDASADLNL 480
            S+AHS PN+NSDL  A VLGS T+ IQSGKIN SF+IT VLPSVPSADQEE ASADLNL
Sbjct: 421 LSIAHSTPNKNSDLARAAVLGSKTDEIQSGKINVSFNITEVLPSVPSADQEEAASADLNL 480

Query: 481 AHSTPNRNTDIAADPVSKSKSEEMKSVESFPEAQCTVPNVTLNKGRGSSWRQKSSWTQLV 540
           AHSTPN NTD+ ADP+SKSKSEEMKSVESF +AQCTVPNV  NKGRGSSWRQKSSWTQLV
Sbjct: 481 AHSTPNINTDVGADPISKSKSEEMKSVESFLDAQCTVPNVNSNKGRGSSWRQKSSWTQLV 540

Query: 541 SEEITSFSITQILPNNTYEKQVQGEFDATDVNLAARSESNASKKQDSQCIAEDESAAFVI 600
           SEEITSFSITQILPNNT  KQVQGE  A++ N +  SE+NA KKQDS+CIAEDES AFVI
Sbjct: 541 SEEITSFSITQILPNNTSGKQVQGEAGASNANFSLWSETNAPKKQDSECIAEDESTAFVI 600

Query: 601 QKDEIAWNDVKKTEPPVVQECEPSPTQIIESNLPQQAGSFDVISGETCPFMRNSRSIAEW 660
            KDEI  NDVKK EP  VQECE  PTQIIESNLPQQ GSFDVISGETCPFMRNS+S+AEW
Sbjct: 601 GKDEIDSNDVKKNEPQAVQECETCPTQIIESNLPQQGGSFDVISGETCPFMRNSQSVAEW 649

Query: 661 TKIKAALSGGSKKKKQRQ 679
           TKIKAALSGGSKKKKQRQ
Sbjct: 661 TKIKAALSGGSKKKKQRQ 649

[Close]

BLAST of Lsi06G006640 vs. NCBI nr
Match: gi|778664026|ref|XP_004139156.2| (PREDICTED: uncharacterized protein LOC101203716 [Cucumis sativus])

HSP 1 Score: 1001.5 bits (2588), Expect = 7.0e-289
Identity = 536/686 (78.13%), Postives = 575/686 (83.82%), Query Frame = 1


Query: 1   MEKEESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60
           MEK +S+SE MRIYVGGLGAAMTEDDLRKVF SVGGVVEAVDFVRTKSRSFAYVDFFPSS
Sbjct: 1   MEKGQSASENMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60

Query: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEEDAQIMDDNVGVDMEVVAPES 120
           QSSLSKLFSTYNGCAWKGGKLRLEKAKE+YLARL REWEEDAQI D+NVG DME+VAPES
Sbjct: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKENYLARLNREWEEDAQIRDNNVGADMELVAPES 120

Query: 121 TKHVTKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEVPPLPVHFCDCEEHNVSAPIG 180
           T+HVTKSEHI IFFPSLGEVK LPISGTG HKYDFPHVEVPP PVHFCDCEEHN S+PIG
Sbjct: 121 TEHVTKSEHINIFFPSLGEVKPLPISGTGTHKYDFPHVEVPPFPVHFCDCEEHNASSPIG 180

Query: 181 NSKETKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTD 240
           NSK TKTRDLNAENGGMDEDEIKMMNAVL KLFER+EAS SNCN++MALNDKH+ST  TD
Sbjct: 181 NSKYTKTRDLNAENGGMDEDEIKMMNAVLSKLFERKEASQSNCNDSMALNDKHNSTTSTD 240

Query: 241 NQPLEDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILS 300
           NQ LEDNKVDSDEDNLVLNVMASNCNS+TM LN GNK FKAHGNSK              
Sbjct: 241 NQLLEDNKVDSDEDNLVLNVMASNCNSKTMALNRGNKIFKAHGNSK-------------- 300

Query: 301 IFFIERPFLLQGFVAGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSY 360
                           A RDQKNN RVQSK+RKS ISEEFDGNESV SI TS  GTDPSY
Sbjct: 301 ---------------DAVRDQKNNCRVQSKKRKSFISEEFDGNESVPSIFTSNRGTDPSY 360

Query: 361 DPASSSRPQAPDRGPQIQSSRSQKSSWKTLIRDKSSVSFSISDILPSVPSANEEQAEADD 420
           DPA SSRPQAPDRGP +QS RSQKSSWKTLIRDKS+VSF ISDIL SVPSANEE+AEADD
Sbjct: 361 DPARSSRPQAPDRGPPVQSLRSQKSSWKTLIRDKSNVSFCISDILSSVPSANEEKAEADD 420

Query: 421 HSLAHSIPNRNSDLTTATVLGSTTNGIQSGKINASFSITNVLPSV--------PSADQEE 480
            ++AHS PNRNS+L +  VLGS  + IQSGKIN  FSIT+VLP V         SADQE+
Sbjct: 421 LNIAHSTPNRNSNLASTAVLGSEIDEIQSGKINVPFSITDVLPLVLSADQEKAASADQEK 480

Query: 481 DASADLNLAHSTPNRNTDIAADPVSKSKSEEMKSVESFPEAQCTVPNVTLNKGRGSSWRQ 540
            ASADLNLAHSTPN NTD+ ADP+SKSKSEEM+SVESF +AQCTVPNVTLNKGRGSSWR+
Sbjct: 481 AASADLNLAHSTPNINTDVGADPISKSKSEEMESVESFQDAQCTVPNVTLNKGRGSSWRK 540

Query: 541 KSSWTQLVSEEITSFSITQILPNNTYEKQVQGEFDATDVNLAARSESNASKKQDSQCIAE 600
           KSSWTQLVSEE TSFSITQILPN+T E QVQGE    + N +A SE+NA +KQDS+CIA+
Sbjct: 541 KSSWTQLVSEEFTSFSITQILPNSTSENQVQGESGDINANFSAWSETNAPRKQDSECIAK 600

Query: 601 DESAAFVIQKDEIAWNDVKKTEPPVVQECEPSPTQIIESNLPQQAGSFDVISGETCPFMR 660
           DES AFVI K EI  NDVK+ EP  VQECE  PTQI ESN PQQ GSFD ISG+TCPFMR
Sbjct: 601 DESTAFVIGKGEIGCNDVKQNEPQAVQECETCPTQITESNFPQQEGSFDEISGDTCPFMR 657

Query: 661 NSRSIAEWTKIKAALSGGSKKKKQRQ 679
           NS+S+AEWTKIKAALSGGSKKKKQRQ
Sbjct: 661 NSQSVAEWTKIKAALSGGSKKKKQRQ 657

[Close]

BLAST of Lsi06G006640 vs. NCBI nr
Match: gi|590582319|ref|XP_007014591.1| (RNA-binding family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-79
Identity = 247/706 (34.99%), Postives = 370/706 (52.41%), Query Frame = 1


Query: 6   SSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSSQSSLS 65
           +++   RI+VGGLG +++ DDLRKVF +VG  VE +D +R K RSFAYVD  PSS +SLS
Sbjct: 2   AATASTRIHVGGLGQSVSSDDLRKVFSAVG-TVEGLDIIRAKGRSFAYVDILPSSSNSLS 61

Query: 66  KLFSTYNGCAWKGGKLRLEKAKESYLARLRREW-EEDAQIMDDNVGVDMEVVAPESTKHV 125
           KLF+TYNGC WKGGKL+L KAKE YL RL+REW +E+ +     +    +     +  HV
Sbjct: 62  KLFNTYNGCVWKGGKLKLGKAKEHYLTRLKREWAKEEEEAHHQPMPSSSDEPYNGNKVHV 121

Query: 126 TKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEVPPLPVHFCDCEEHNVSAPIGNSKE 185
           ++  H++IFFP L  VKSLP+SGTG HKY F  VEV  LP+HFCDCEEH+        KE
Sbjct: 122 SQQGHLRIFFPRLTRVKSLPLSGTGKHKYSFQRVEVSALPIHFCDCEEHSGHFNAVRRKE 181

Query: 186 TKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTDNQPL 245
            +  +    NG M+E+E+ MM++V+ KLFER  A+ SN +  +  +++ D TKL +  PL
Sbjct: 182 GQNHE--EINGVMNEEEVSMMSSVMNKLFER--ANISNTSSAILADEREDFTKLIEG-PL 241

Query: 246 EDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILSIFFI 305
            D + ++D+D+L++NV++ + N   M   SG++  KA     V    T    T +S +  
Sbjct: 242 SDEE-ETDDDDLIINVVSDSNNRAAM---SGSREKKA-----VSTEKTGLGETHISNY-- 301

Query: 306 ERPFLLQGFVAGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSYDPAS 365
                  G +  A + Q+NN+    K+RK + ++E D ++ V         ++     A 
Sbjct: 302 -------GAIRSACKVQENNTLHPRKKRKPLPNKEEDKHQLVSLFHGQRRNSEFDDSNAD 361

Query: 366 SSRPQAPDRGPQIQ-SSRSQKSSWKTLIRDKSSVS--FSISDILPSV--PSANEEQAEAD 425
               +A +    I   S + K S +T + DK S+   F  S+   S   P  NE + + D
Sbjct: 362 FEENEANEDNLMINIVSMANKRSGRTKL-DKVSLKQRFKSSEKQTSEDGPIQNEHKVQKD 421

Query: 426 DHSLAHSIPNRNSDLTTAT-----VLGSTTNGIQSG----------------------KI 485
           D  L    PNRN      T     V+ + T G + G                      + 
Sbjct: 422 DILL----PNRNEKGNVQTQSNESVVVAQTTGAECGLKQSNTSCSWSQKSSWRALVGDRS 481

Query: 486 NASFSITNVLPSVPSADQEEDASADLNLAHSTPNRNTDIAADPVSKSK--SEEMKSVESF 545
           N++FS++N+L +V +  +++  S    +  +  +RN ++A     +      E+  VE  
Sbjct: 482 NSAFSLSNILQNVGTTKEKQQISDGCKVNKTLDSRNGNLAKPKNLEGMLGKTEIVDVEPQ 541

Query: 546 PEAQCTVPNVTLNKGRGSSWRQKSSWTQLVSEEITSFSITQILPNNTYEKQVQGEFDATD 605
           P    T  +   N GRGSSW  KSSW QLVSE  +SFSI++I+P +T +++         
Sbjct: 542 PNQPKTASS---NSGRGSSWLHKSSWMQLVSENSSSFSISEIVPGSTTKQECTKPIYEDV 601

Query: 606 VNLAARSESNASKKQDSQCIAEDESAAFVIQKDEIAWNDVKKTEPPVVQECEPSPTQIIE 665
           V  A  + SN +K   S+       A  V ++ +   +  +  +  VV   + S   + +
Sbjct: 602 VYSADGNHSNKTKSHKSEPTVYGSPALGVRKEGDTVRSIPESNQQTVVGNTDASVPTVEK 661

Query: 666 SNL-PQQAGSFDVISGETCPFMRNSRSIAEWTKIKAALSGGSKKKK 676
            N  P +A   D   GETC FMR+S S+ EW K KAAL G  KKK+
Sbjct: 662 CNSEPDKAFGGDTSIGETCSFMRSSASLKEWVKTKAALKGSRKKKR 675

[Close]

BLAST of Lsi06G006640 vs. NCBI nr
Match: gi|823146301|ref|XP_012473040.1| (PREDICTED: uncharacterized protein LOC105790149 [Gossypium raimondii])

HSP 1 Score: 290.0 bits (741), Expect = 1.0e-74
Identity = 227/716 (31.70%), Postives = 357/716 (49.86%), Query Frame = 1


Query: 1   MEKEESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60
           M  + +++ + RI+VGGLG ++  DDLRK+F +VG  VE VD VRTK RSFAYVD  PS+
Sbjct: 1   MAADPTATTRTRIHVGGLGQSVNSDDLRKIFSAVG-TVEGVDIVRTKGRSFAYVDILPST 60

Query: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKESYLARLRREWEEDAQIMDDNVGVDMEVVAPES 120
            +S+SKLFSTYNGCAWKGGKL+LEKAKE +L RL+REW E     + N G      +   
Sbjct: 61  SNSISKLFSTYNGCAWKGGKLKLEKAKEHFLIRLKREWAEAEAEDEANEGSHQAKPSSSD 120

Query: 121 TKH------VTKSEHIQIFFPSLGEVKSLPISGTGAHKYDFPHVEVPPLPVHFCDCEEHN 180
           + +      V+++  ++IFFP L ++KSLP SGTG H+Y F  VE    P+HFCDC EH 
Sbjct: 121 SNNSKNKVQVSQNNQLRIFFPRLSKIKSLPFSGTGKHRYSFQRVEALAFPLHFCDCAEH- 180

Query: 181 VSAPIGNSKETKTRDLNAENGGMDEDEIKMMNAVLIKLFERQEASPSNCNETMALNDKHD 240
            S      K+ + R     N GM+E+E+ +M++V+ KLFER+    SN +    + +++D
Sbjct: 181 -SGRFNAVKQKEVRRHEEINDGMNEEELSLMSSVMNKLFERENI--SNTSRPTIVKERND 240

Query: 241 STKLTDNQPLEDNKVDSDEDNLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIA 300
             +   + P  + + D D+D+L++NV+ SN N RT     G        + KV    T  
Sbjct: 241 FIEPVKDLPSNEEENDDDDDDLIINVV-SNANKRTAMSRIGE-------SKKVSTEKTRL 300

Query: 301 TITILSIFFIERPFLLQGFVAGAARDQKNNSRVQSKERK---------SIISEEFDGNES 360
           +         E      G +  A++ QK N+    K+RK         + +S +   N  
Sbjct: 301 S---------ENKVSKDGAIPSASKLQKKNALHAEKKRKPNRDDKHEITSLSSQLRMNSQ 360

Query: 361 VLSISTSYGGTDPSYDPASSSRPQAPDRGPQIQ-SSRSQKSSWKTLIRDKSSVSF----- 420
              I   +   D + D    +      +G  +  S++  K S K   +   + S      
Sbjct: 361 CDEIEAGFEEDDETDDDLVINVASTESKGKALSGSTKRAKVSPKQNFKPSETQSTENERE 420

Query: 421 -SISDILPSVPSANEEQAEADDHSLAHSIPNRNSDLTT------ATVLGSTTNGIQS--- 480
                +LP          E D +    ++P     L         ++  S+T+ + S   
Sbjct: 421 EKKDRLLPKKKMKLISTKERDGNEAVSTVPAEKGPLIAQMTEQDCSLKPSSTSCLWSQKS 480

Query: 481 -------GKINASFSITNVLPSVPSADQEEDASADLNLAHSTPNRNTDIAADPVSKSKSE 540
                  G+ +++FS++N+L +  +  +E+    D  + ++  ++N  ++     +  S+
Sbjct: 481 SWKALVGGRGDSAFSLSNILQNADTT-EEQHIFDDPKVDNTLDSKNDKLSTPENLEGMSD 540

Query: 541 EMKSVESFPEAQCTVPNVT-LNKGRGSSWRQKSSWTQLVSEEITSFSITQILPNNTYEKQ 600
           +M+   +  EAQ   P++T  N GRGSSW  KSSWTQLVS++  SFSI+QILP  T  ++
Sbjct: 541 KMEIANAIAEAQPNKPSMTSSNTGRGSSWLHKSSWTQLVSDKSNSFSISQILPGTTTSQE 600

Query: 601 VQGEFDATDVNLAARSESNASKKQDSQCIAEDESAAFVIQKDEIAWNDVKKTEPPVVQEC 660
           +        V  A  + +N   +  ++ + + +S              + KT P  ++  
Sbjct: 601 LAKPTGEDVVQSADGNYTNEMDRFTTEGVGQGDSV-----------ESIPKTSPQTLEGS 660

Query: 661 EPSPTQIIE--SNL-PQQAGSFDVISGETCPFMRNSRSIAEWTKIKAALSGGSKKK 675
             +    +E  SN  P +  + D  +G TC FMR+S S+ EW K KAAL G  KKK
Sbjct: 661 NNTSLPAVENISNFEPVKGFAVDTSTGGTCSFMRSSTSLKEWAKTKAALKGSRKKK 682

[Close]

BLAST of Lsi06G006640 vs. NCBI nr
Match: gi|1021034406|gb|KZM92190.1| (hypothetical protein DCAR_020445 [Daucus carota subsp. sativus])

HSP 1 Score: 289.3 bits (739), Expect = 1.8e-74
Identity = 249/742 (33.56%), Postives = 362/742 (48.79%), Query Frame = 1


Query: 1   MEK--EESSSEKMRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFVRTKSRSFAYVDFFP 60
           MEK  EE  ++  RIY+GGLG  +TEDD+RK F  +G V +AVD  RTK RSFAY+DF P
Sbjct: 1   MEKVEEEKGAQGTRIYMGGLGKIVTEDDIRKTFSGLGRV-DAVDIFRTKGRSFAYLDFVP 60

Query: 61  SSQSSLSKLFST-------------------------------YNGCAWKGGKLRLEKAK 120
           S++ SL KLFST                               YNGC WKGG+L+LEKAK
Sbjct: 61  SAEKSLPKLFSTVSLSLPIGPSPLYSLELHAYSGRAGSHRTGNYNGCMWKGGRLKLEKAK 120

Query: 121 ESYLARLRREWEEDAQIMDDNVG-VDMEVVAPESTK----HVTKSEHIQIFFPSLGEVKS 180
           E YL RL+REW++DA++++     VD+    P S K       +  +I+IFFP L ++KS
Sbjct: 121 EHYLLRLKREWDDDAKLINSAPSRVDISDSKPSSEKPKKLQALEKPNIRIFFPKLSKMKS 180

Query: 181 LPISGTGAHKYDFPHVEVPPLPVHFCDCEEHNVSAPIGNSKETKTRDLNAENGGMDEDEI 240
           LP  G+G HKY F  +EVPPLP+HFCDCEEH  S    + ++  T D    NGG+ E+E+
Sbjct: 181 LPFGGSGKHKYSFQRIEVPPLPIHFCDCEEHCNSF---HKEKGTTSDTETANGGIREEEL 240

Query: 241 KMMNAVLIKLFERQEASPSNCNETMALNDKHDSTKLTDNQP-LEDNKVD-------SDED 300
            +M +V+ KLFER+        ++ A+ D+  ST+  D+ P + D  VD       SDE+
Sbjct: 241 SIMESVMKKLFERE-------TDSKAVADRGKSTEERDSLPEVIDIPVDEVISDPPSDEE 300

Query: 301 NLVLNVMASNCNSRTMPLNSGNKSFKAHGNSKVKNHATIATITILSIFFIERPFLLQGFV 360
           NL++N++A    S    L SGN++ K   ++K   H    T       F +RP      V
Sbjct: 301 NLIINIVAGGKESM---LLSGNQAQKTRPDNKELKHGRSNT-------FKDRP------V 360

Query: 361 AGAARDQKNNSRVQSKERKSIISEEFDGNESVLSISTSYGGTDPSYDPASSSRPQAPDRG 420
                 QK N    S +RK  ++E  +GNE   S+ T    + P        +   P   
Sbjct: 361 NSLHTSQKKNIESFSMKRKLPLAELSEGNERE-SLDTKKKKSLPVNSKGQEDQSTEPKAR 420

Query: 421 PQIQSSR---SQKSSWKTLIRDKSSVSFSISDILPSVPSANEEQAEADDHSLAHSIPN-- 480
           P    +    SQKS+WK LI  K +  F  S ++ S+ S  EEQ  +    L+ S     
Sbjct: 421 PPKSKNNIAWSQKSAWKDLIGKKGNTPFQFSSVVSSISSTKEEQPNSSSDKLSESFAKVK 480

Query: 481 --RNSDLTTATVLGSTTNGIQSGKINASFSITNVLPSVPSADQEEDASADLNLA--HSTP 540
             ++SD             I S K+    S   V+  +    +E+    DLN+    S  
Sbjct: 481 LPQSSDAAPT---------IASAKVEQPQSSRFVVGVIM---EEQTRPRDLNVISYSSDS 540

Query: 541 NRNTDIAADPVSKSKSEEMKSVESFPEAQCTVPNVTLNKGRGSSWRQKSSWTQLVSE-EI 600
            +   +  +P S++   + K     P A  +  +V++   RG SWRQKSSWTQLV++   
Sbjct: 541 EKQNTLHGNPESETMQSKEKQGAEAP-ALASPNDVSITTARGVSWRQKSSWTQLVADANK 600

Query: 601 TSFSITQILPNNTYEKQVQGEFDATDVNLAARSESNASK------------------KQD 660
            SFSI+Q++P  ++E Q   + + TDV   A   SNA                    K  
Sbjct: 601 NSFSISQVIPGLSFETQ-PSQPNLTDV---AADTSNAEHQNLLKLNELENTGHGLEVKDR 660

Query: 661 SQCIAEDESAAFVIQKDEIAWNDVKKTEPPVVQECEPSPTQIIESNLPQQAGSFDVIS-G 668
           S  +A     A  + K  +   D +K++   V     +    I + LP       +   G
Sbjct: 661 SVHVAPSNFDAISLSKSTV---DSEKSKASTVLGKREATALKINNRLPLIRKPISIADFG 694

The following BLAST results are available for this feature:

BLAST of Lsi06G006640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NOL8_MOUSE	4.2e-07	35.64	Nucleolar protein 8 OS=Mus musculus GN=Nol8 PE=1 SV=2	[more]
NOL8_HUMAN	5.5e-07	31.54	Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1	[more]

BLAST of Lsi06G006640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXQ1_CUCSA	4.9e-289	78.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651690 PE=4 SV=1	[more]
A0A061GQW7_THECC	7.5e-80	34.99	RNA-binding family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_039820 ...	[more]
A0A0D2QQG1_GOSRA	7.3e-75	31.70	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G023000 PE=4 SV=1	[more]
A0A161ZY97_DAUCA	1.2e-74	33.56	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020445 PE=4 SV=1	[more]
V4KX69_EUTSA	2.8e-74	34.93	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10012942mg PE=4 SV=1	[more]

BLAST of Lsi06G006640 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58130.1	3.8e-59	35.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Lsi06G006640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085871\|ref\|XP_008443653.1\|	4.9e-298	80.83	PREDICTED: uncharacterized protein LOC103487200 [Cucumis melo]	[more]
gi\|778664026\|ref\|XP_004139156.2\|	7.0e-289	78.13	PREDICTED: uncharacterized protein LOC101203716 [Cucumis sativus]	[more]
gi\|590582319\|ref\|XP_007014591.1\|	1.1e-79	34.99	RNA-binding family protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|823146301\|ref\|XP_012473040.1\|	1.0e-74	31.70	PREDICTED: uncharacterized protein LOC105790149 [Gossypium raimondii]	[more]
gi\|1021034406\|gb\|KZM92190.1\|	1.8e-74	33.56	hypothetical protein DCAR_020445 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006640.1	Lsi06G006640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 13..57 score: 2.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 12..84 score: 2.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 11..88 score: 12
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..88 score: 4.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 5..90 score: 1.75
None	No IPR available	PANTHER	PTHR23099	TRANSCRIPTIONAL REGULATOR	coord: 1..263 score: 3.6
None	No IPR available	PANTHER	PTHR23099:SF0	ACIDIC REPEAT-CONTAINING PROTEIN	coord: 1..263 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G006640	Csa1G651690	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006640	CSPI01G31930	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006640	Cucsa.356330	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006640	CmaCh11G009220	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006640	CmoCh11G009440	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006640	Cla002184	Watermelon (97103) v1	lsiwmB395
Lsi06G006640	MELO3C010014	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G006640	ClCG03G011600	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G006640	MELO3C010014.2	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G006640	Cla97C03G061910	Watermelon (97103) v2	lsiwmbB365
Lsi06G006640	Bhi02G001160	Wax gourd	lsiwgoB521
Lsi06G006640	Cp4.1LG00g01420	Cucurbita pepo (Zucchini)	cpelsiB017
Lsi06G006640	CsGy1G030940	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006640	Carg22712	Silver-seed gourd	carlsiB485
Lsi06G006640	CsaV3_1G044190	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G006640	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006640	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006640	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G006640	Silver-seed gourd	carlsiB886