CmoCh11G009440 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G009440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding family protein, putative isoform 1
Location	Cmo_Chr11 : 4907550 .. 4910605 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCCCATATTTCAGAGGGGTCCCTGTTGGGCGACTGCTGGGTCTGCGAGCTCTAGGAGGAGGAAGAAGAAGAAGAAAAGCCATGGAAGAAGGAGAAAGCGCCTCCTCGAAGTTGAGGATTTACGTTGGAGGACTAGGTGCTGCCATGACTGAAGACGACCTCAGGAAGGTTTTTCAGAGCGTCGGCGGCGTGGTGGAGGCCGTTGATTTCATTCGTTCCAAATCTCGGAGCTTCGCTTACGTCGACTTCTTTCCGTCCTCCCAATCGTCCGTCTCCAAACTCTTCAGCACTGTAAGTTTTTTTCTCCTCGATTCCATTGCCGAACTCTCATTACGTTGTTTTTTTTTTCCCCGATTTTGGCTATGTTTTCTCTTGAATGTGTGTTTATATGCCTATCTCGCTATCTGGTTGCGATTTTAACCTAATTGTAGTTCGATTATTGCATTTTCCGTACCTCTTCATGAATTAGATAGCGCGTTCCTAATTTAGTTGCTGAAAAGTTCGTTATTCTTGTACATAGTACAATGGATGTGCTTGGAAAGGAGGAAAGTTGAGGCTTGAGAAAGCTAAGGAACATTATCTTGCTCGCTTGAGGCGGGAGTGGGAGGAAGATGCTGAAATTATGAATTATGATGATGGTGCAGACCTGGAGACTTCTGCTCCAGAATCTACAGAGCATGTTGCGAAATCAGAGCACATTCAGATTTTCTTTCCAAGTTTAGGAGAGGTGATTCTTTGCTTACGAAGTTTTCATTTTGAGATGATTCAATCAATGACTGTTCTTTAGATTCTTAAGTATGAATTTGTTTACAGGTGAAGTCTTTACCAATTAGTGGTACGGGAACTCACAAATATGATTTTCCACATGTTGAGGTGCCTCCTCTTCCTGTGCATTTTTGTGACTGTGAAGAGCATAATGTTTCTGATCCCACTAGCAAATCCATGGACGCAAAAACAGGAGATTTGGATGCTGGGAATGGTGGAATTGGTGAAGATGAAATCAAGATGATGAATACAGTGTTGAACAAGCTCTTTGAGAGGCAGGAAGCTTCTCATGCTAATTGTAATGGAACCATGGGAGTCAAGGATAAAGACAACTCTAAGATATTGACCGATAATCAACCACTTGAAGATAATAAAGAGGATAGCGATGAAGATAGCCTTGTGCTTAATGTAATGGCTAGTGGCTCCAATTCCAAACCTTTGCCATTGAACAGTGGCAGTAAAAGTTTCAAAGCTCATGGGAACAGTAAGGTTAAGAATTACGCTATCACCATCGCCATTTTATCGTTTTTTCCTTCACGTTTTAAGATATATTTGAGAGGGTATGTTTATCTCACGGGTTTGTTGAAGCATTTTGGGTTTTTTGTATTTCATTCGGTTTTTATCATCTTGAACTTTGCGGTCGAGGTATACTTATAAAAATGGATCGTTTCAGGGTGCGGACAGGGATCAGAAAGGTAATAGCAGAGTTCAAAGCAAGAAAAGGAAATCGGTTACCAATGAGGAATTTGATAGTAATGAATATGTGCCCAATATCTCTACTGGCAGTGGAAAGGGGAACACAAATCCAGCATATGAGCCAGTTGGACCCTCGAGGCCTCAAGCTCCTGATCGAGCAATGCCGATCCAATCTTCACGTTCTCAGAAATCTTCATGGAAAACACTTATTTGTGATAAGAGCAAGGCTTCATTCAGCATCTCAGACATACTGCCTTCTGTTCCTTCAGCAAATGAAGAGCAACCAGAAGCAGATGCTCTAAGTCTAGCTCATTCATCTCCGAACAGAAACAGCGACCGTGCTACTGCTGCAGTATTGAAAAGAAAAAAAGATAAAACGAAACCCGCGAATAGCAATGTTTCCTTCAGCATTTTAGACACACTGCCTACTGCGTCTTCAGGAGATCAAGAGCAAACAGAAGCTGATGATCCGAATCGAGCTCATTCAACTCCAAACAGAAACAGCGACCTTGCTACTGCTGCAGTATTGAAAAGGAAAAAAGATGAAACGAAACCCGCGAATAGCAATGTTTCGTTCTGCATTTCAGACGCACTGCCTACTGCATCATCAGCAGATCAAAAGCAAACAGAAGCCGAGGATCTGAATCTAGCTGCAACTGATGCAATATTTGAAAGCAAATCAAAAGAAATGAAATCTGTGGAGAGCTCCCCAGAAGCCGAAAATACTGTTCGAAATGTCACCTCGAATCAAGGAAGAGGCGCTGCATGGAAGCAAAAATCTTCATGGACACAATTAGTTAGCCAGGAAGCCACCTCCTTCAGTATTACTCAAATTTTATCAAACAATACTTCTGAAAAGCAGGTACAAAGGGAATCCGATGTCATCAATGTTAATCTTTTCGCGCCAAGCGAAAATAAGGATTCAATAGAACAGCAAATTCAAAGTACTGCGGCAGATGATTCTGCTGCATTTGTAGTTGCAAAAGATGAAACTGCCTGTTATGATGTCAAGAAGAACGATCAACCTGCAGTGCAAGAAAATGAGCCCTCTCCCACCGAAGCTATTGAGAGGCATATTAAACCACAGGAAGCAGGTTCATTTCATGCTAAAAGCGGCGAAACTTGCTGCCCGTTTATGAGAAATTCTCGGTCGGTAGCCGAGTGGACAAAGATAAAAGCTGCTCTTTCTGGTGGATCCAAGAAGAAAAAGCAGAGACAATTGGACACTCAATAGCATAGGTATGTAACTCTTAAATCTTGGTTGAATGTTGGGGCTTGGTTATATCTGACATAAATTAGTTTCATCTACTTGTGAACAATCCATTGCAGCTTTGAATGGGTTCTTGGGATGAAAGTGTTTTTAGCCTTAGAAGGAAAATTTAAAAGCAGTGAAGTTTTATCTACCTGCATTATTGACATTTTATAATTTAGCCTTATAATTTAAATCAGCTATTATTCATAGACAATATTTTGTATCTTTTAAATTGAGTTTAGATTTGCATTACCCACTCCCAAACGGCTTCAAACACTAACCAACACGTGTGGTTATTTACTTGGTTGTCGGGTGCCTTCTCGAGCTAGCTTTTTTGCGTG

mRNA sequence

CTTTCCCATATTTCAGAGGGGTCCCTGTTGGGCGACTGCTGGGTCTGCGAGCTCTAGGAGGAGGAAGAAGAAGAAGAAAAGCCATGGAAGAAGGAGAAAGCGCCTCCTCGAAGTTGAGGATTTACGTTGGAGGACTAGGTGCTGCCATGACTGAAGACGACCTCAGGAAGGTTTTTCAGAGCGTCGGCGGCGTGGTGGAGGCCGTTGATTTCATTCGTTCCAAATCTCGGAGCTTCGCTTACGTCGACTTCTTTCCGTCCTCCCAATCGTCCGTCTCCAAACTCTTCAGCACTTACAATGGATGTGCTTGGAAAGGAGGAAAGTTGAGGCTTGAGAAAGCTAAGGAACATTATCTTGCTCGCTTGAGGCGGGAGTGGGAGGAAGATGCTGAAATTATGAATTATGATGATGGTGCAGACCTGGAGACTTCTGCTCCAGAATCTACAGAGCATGTTGCGAAATCAGAGCACATTCAGATTTTCTTTCCAAGTTTAGGAGAGGTGATTCTTTGCTTACGAAGTTTTCATTTTGAGATGATTCAATCAATGACTGTGAAGTCTTTACCAATTAGTGGTACGGGAACTCACAAATATGATTTTCCACATGTTGAGGTGCCTCCTCTTCCTGTGCATTTTTGTGACTGTGAAGAGCATAATGTTTCTGATCCCACTAGCAAATCCATGGACGCAAAAACAGGAGATTTGGATGCTGGGAATGGTGGAATTGGTGAAGATGAAATCAAGATGATGAATACAGTGTTGAACAAGCTCTTTGAGAGGCAGGAAGCTTCTCATGCTAATTGTAATGGAACCATGGGAGTCAAGGATAAAGACAACTCTAAGATATTGACCGATAATCAACCACTTGAAGATAATAAAGAGGATAGCGATGAAGATAGCCTTGTGCTTAATGTAATGGCTAGTGGCTCCAATTCCAAACCTTTGCCATTGAACAGTGGCAGTAAAAGTTTCAAAGCTCATGGGAACAGTAAGGTTAAGAATTACGCTATCACCATCGCCATTTTATCGTTTTTTCCTTCACGTTTTAAGATATATTTGAGAGGGTATGTTTATCTCACGGGTTTGTTGAAGCATTTTGGGTTTTTTGTATTTCATTCGGTTTTTATCATCTTGAACTTTGCGGTCGAGGGTGCGGACAGGGATCAGAAAGGTAATAGCAGAGTTCAAAGCAAGAAAAGGAAATCGGTTACCAATGAGGAATTTGATAGTAATGAATATGTGCCCAATATCTCTACTGGCAGTGGAAAGGGGAACACAAATCCAGCATATGAGCCAGTTGGACCCTCGAGGCCTCAAGCTCCTGATCGAGCAATGCCGATCCAATCTTCACGTTCTCAGAAATCTTCATGGAAAACACTTATTTGTGATAAGAGCAAGGCTTCATTCAGCATCTCAGACATACTGCCTTCTGTTCCTTCAGCAAATGAAGAGCAACCAGAAGCAGATGCTCTAAGTCTAGCTCATTCATCTCCGAACAGAAACAGCGACCGTGCTACTGCTGCAGTATTGAAAAGAAAAAAAGATAAAACGAAACCCGCGAATAGCAATGTTTCCTTCAGCATTTTAGACACACTGCCTACTGCGTCTTCAGGAGATCAAGAGCAAACAGAAGCTGATGATCCGAATCGAGCTCATTCAACTCCAAACAGAAACAGCGACCTTGCTACTGCTGCAGTATTGAAAAGGAAAAAAGATGAAACGAAACCCGCGAATAGCAATGTTTCGTTCTGCATTTCAGACGCACTGCCTACTGCATCATCAGCAGATCAAAAGCAAACAGAAGCCGAGGATCTGAATCTAGCTGCAACTGATGCAATATTTGAAAGCAAATCAAAAGAAATGAAATCTGTGGAGAGCTCCCCAGAAGCCGAAAATACTGTTCGAAATGTCACCTCGAATCAAGGAAGAGGCGCTGCATGGAAGCAAAAATCTTCATGGACACAATTAGTTAGCCAGGAAGCCACCTCCTTCAGTATTACTCAAATTTTATCAAACAATACTTCTGAAAAGCAGGTACAAAGGGAATCCGATGTCATCAATGTTAATCTTTTCGCGCCAAGCGAAAATAAGGATTCAATAGAACAGCAAATTCAAAGTACTGCGGCAGATGATTCTGCTGCATTTGTAGTTGCAAAAGATGAAACTGCCTGTTATGATGTCAAGAAGAACGATCAACCTGCAGTGCAAGAAAATGAGCCCTCTCCCACCGAAGCTATTGAGAGGCATATTAAACCACAGGAAGCAGGTTCATTTCATGCTAAAAGCGGCGAAACTTGCTGCCCGTTTATGAGAAATTCTCGGTCGGTAGCCGAGTGGACAAAGATAAAAGCTGCTCTTTCTGGTGGATCCAAGAAGAAAAAGCAGAGACAATTGGACACTCAATAGCATAGGTATGTAACTCTTAAATCTTGGTTGAATGTTGGGGCTTGGTTATATCTGACATAAATTAGTTTCATCTACTTGTGAACAATCCATTGCAGCTTTGAATGGGTTCTTGGGATGAAAGTGTTTTTAGCCTTAGAAGGAAAATTTAAAAGCAGTGAAGTTTTATCTACCTGCATTATTGACATTTTATAATTTAGCCTTATAATTTAAATCAGCTATTATTCATAGACAATATTTTGTATCTTTTAAATTGAGTTTAGATTTGCATTACCCACTCCCAAACGGCTTCAAACACTAACCAACACGTGTGGTTATTTACTTGGTTGTCGGGTGCCTTCTCGAGCTAGCTTTTTTGCGTG

Coding sequence (CDS)

ATGGAAGAAGGAGAAAGCGCCTCCTCGAAGTTGAGGATTTACGTTGGAGGACTAGGTGCTGCCATGACTGAAGACGACCTCAGGAAGGTTTTTCAGAGCGTCGGCGGCGTGGTGGAGGCCGTTGATTTCATTCGTTCCAAATCTCGGAGCTTCGCTTACGTCGACTTCTTTCCGTCCTCCCAATCGTCCGTCTCCAAACTCTTCAGCACTTACAATGGATGTGCTTGGAAAGGAGGAAAGTTGAGGCTTGAGAAAGCTAAGGAACATTATCTTGCTCGCTTGAGGCGGGAGTGGGAGGAAGATGCTGAAATTATGAATTATGATGATGGTGCAGACCTGGAGACTTCTGCTCCAGAATCTACAGAGCATGTTGCGAAATCAGAGCACATTCAGATTTTCTTTCCAAGTTTAGGAGAGGTGATTCTTTGCTTACGAAGTTTTCATTTTGAGATGATTCAATCAATGACTGTGAAGTCTTTACCAATTAGTGGTACGGGAACTCACAAATATGATTTTCCACATGTTGAGGTGCCTCCTCTTCCTGTGCATTTTTGTGACTGTGAAGAGCATAATGTTTCTGATCCCACTAGCAAATCCATGGACGCAAAAACAGGAGATTTGGATGCTGGGAATGGTGGAATTGGTGAAGATGAAATCAAGATGATGAATACAGTGTTGAACAAGCTCTTTGAGAGGCAGGAAGCTTCTCATGCTAATTGTAATGGAACCATGGGAGTCAAGGATAAAGACAACTCTAAGATATTGACCGATAATCAACCACTTGAAGATAATAAAGAGGATAGCGATGAAGATAGCCTTGTGCTTAATGTAATGGCTAGTGGCTCCAATTCCAAACCTTTGCCATTGAACAGTGGCAGTAAAAGTTTCAAAGCTCATGGGAACAGTAAGGTTAAGAATTACGCTATCACCATCGCCATTTTATCGTTTTTTCCTTCACGTTTTAAGATATATTTGAGAGGGTATGTTTATCTCACGGGTTTGTTGAAGCATTTTGGGTTTTTTGTATTTCATTCGGTTTTTATCATCTTGAACTTTGCGGTCGAGGGTGCGGACAGGGATCAGAAAGGTAATAGCAGAGTTCAAAGCAAGAAAAGGAAATCGGTTACCAATGAGGAATTTGATAGTAATGAATATGTGCCCAATATCTCTACTGGCAGTGGAAAGGGGAACACAAATCCAGCATATGAGCCAGTTGGACCCTCGAGGCCTCAAGCTCCTGATCGAGCAATGCCGATCCAATCTTCACGTTCTCAGAAATCTTCATGGAAAACACTTATTTGTGATAAGAGCAAGGCTTCATTCAGCATCTCAGACATACTGCCTTCTGTTCCTTCAGCAAATGAAGAGCAACCAGAAGCAGATGCTCTAAGTCTAGCTCATTCATCTCCGAACAGAAACAGCGACCGTGCTACTGCTGCAGTATTGAAAAGAAAAAAAGATAAAACGAAACCCGCGAATAGCAATGTTTCCTTCAGCATTTTAGACACACTGCCTACTGCGTCTTCAGGAGATCAAGAGCAAACAGAAGCTGATGATCCGAATCGAGCTCATTCAACTCCAAACAGAAACAGCGACCTTGCTACTGCTGCAGTATTGAAAAGGAAAAAAGATGAAACGAAACCCGCGAATAGCAATGTTTCGTTCTGCATTTCAGACGCACTGCCTACTGCATCATCAGCAGATCAAAAGCAAACAGAAGCCGAGGATCTGAATCTAGCTGCAACTGATGCAATATTTGAAAGCAAATCAAAAGAAATGAAATCTGTGGAGAGCTCCCCAGAAGCCGAAAATACTGTTCGAAATGTCACCTCGAATCAAGGAAGAGGCGCTGCATGGAAGCAAAAATCTTCATGGACACAATTAGTTAGCCAGGAAGCCACCTCCTTCAGTATTACTCAAATTTTATCAAACAATACTTCTGAAAAGCAGGTACAAAGGGAATCCGATGTCATCAATGTTAATCTTTTCGCGCCAAGCGAAAATAAGGATTCAATAGAACAGCAAATTCAAAGTACTGCGGCAGATGATTCTGCTGCATTTGTAGTTGCAAAAGATGAAACTGCCTGTTATGATGTCAAGAAGAACGATCAACCTGCAGTGCAAGAAAATGAGCCCTCTCCCACCGAAGCTATTGAGAGGCATATTAAACCACAGGAAGCAGGTTCATTTCATGCTAAAAGCGGCGAAACTTGCTGCCCGTTTATGAGAAATTCTCGGTCGGTAGCCGAGTGGACAAAGATAAAAGCTGCTCTTTCTGGTGGATCCAAGAAGAAAAAGCAGAGACAATTGGACACTCAATAG

Homology

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BLAST of CmoCh11G009440 vs. TrEMBL
Match: A0A0A0LXQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651690 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 7.9e-118
Identity = 224/303 (73.93%), Postives = 245/303 (80.86%), Query Frame = 1


Query: 1   MEEGESASSKLRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSS 60
           ME+G+SAS  +RIYVGGLGAAMTEDDLRKVF SVGGVVEAVDF+R+KSRSFAYVDFFPSS
Sbjct: 1   MEKGQSASENMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60

Query: 61  QSSVSKLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNYDDGADLETSAPES 120
           QSS+SKLFSTYNGCAWKGGKLRLEKAKE+YLARL REWEEDA+I + + GAD+E  APES
Sbjct: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKENYLARLNREWEEDAQIRDNNVGADMELVAPES 120

Query: 121 TEHVAKSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVPPL 180
           TEHV KSEHI IFFPSLGE                 VK LPISGTGTHKYDFPHVEVPP 
Sbjct: 121 TEHVTKSEHINIFFPSLGE-----------------VKPLPISGTGTHKYDFPHVEVPPF 180

Query: 181 PVHFCDCEEHNVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANC 240
           PVHFCDCEEHN S P   S   KT DL+A NGG+ EDEIKMMN VL+KLFER+EAS +NC
Sbjct: 181 PVHFCDCEEHNASSPIGNSKYTKTRDLNAENGGMDEDEIKMMNAVLSKLFERKEASQSNC 240

Query: 241 NGTMGVKDKDNSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNSKPLPLNSGSKSFKAHG 300
           N +M + DK NS   TDNQ LEDNK DSDED+LVLNVMAS  NSK + LN G+K FKAHG
Sbjct: 241 NDSMALNDKHNSTTSTDNQLLEDNKVDSDEDNLVLNVMASNCNSKTMALNRGNKIFKAHG 286

Query: 301 NSK 304
           NSK
Sbjct: 301 NSK 286

[Close]

BLAST of CmoCh11G009440 vs. TrEMBL
Match: A0A067K686_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19789 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 3.0e-56
Identity = 128/286 (44.76%), Postives = 181/286 (63.29%), Query Frame = 1


Query: 3   EGESASSKLRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSSQS 62
           EG    S  RIYVGGLG ++T DDL  +F  +GG ++AVD IR+K RSFAY+DF PSS +
Sbjct: 2   EGGEDDSTTRIYVGGLGESVTSDDLCTIFSKIGGDIKAVDIIRTKGRSFAYIDFSPSSHN 61

Query: 63  SVSKLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNY------DDGAD--LE 122
           S+SKLFSTYNGC WKG +LRLEKAKEHYL RL++EW EDA++ +       DD  D  +E
Sbjct: 62  SLSKLFSTYNGCVWKGKRLRLEKAKEHYLDRLKQEWAEDAQLASSTYTAAADDDTDKNME 121

Query: 123 TSAPESTEHVAKSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPH 182
           +      E  ++ + ++IFFP L ++                 KSLP SGTG H+Y F  
Sbjct: 122 SFKKPMKELSSEKKQLRIFFPRLQKL-----------------KSLPFSGTGKHRYSFRR 181

Query: 183 VEVPPLPVHFCDCEEHNVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQE 242
           VEVPPLP HFCDCEEH+ S  T++        L+   GG+ ++E+ MMN+V+NKLFE + 
Sbjct: 182 VEVPPLPTHFCDCEEHSGSVYTTEKKAIPV--LEEQGGGMSKEELDMMNSVMNKLFEIEN 241

Query: 243 ASHANCNGTMGVKDKDNSKILTDNQPLEDNK--EDSDEDSLVLNVM 279
            S    +  +  K++++S  ++D+   E+N+     D+D+L++NV+
Sbjct: 242 VSATAHSDIVLTKEQESSIKVSDDFQSEENEGYSTEDDDNLIINVV 268

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BLAST of CmoCh11G009440 vs. TrEMBL
Match: A0A061GRV1_THECC (RNA-binding family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_039820 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 3.6e-54
Identity = 198/621 (31.88%), Postives = 318/621 (51.21%), Query Frame = 1


Query: 6   SASSKLRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSSQSSVS 65
           +A++  RI+VGGLG +++ DDLRKVF +VG  VE +D IR+K RSFAYVD  PSS +S+S
Sbjct: 2   AATASTRIHVGGLGQSVSSDDLRKVFSAVG-TVEGLDIIRAKGRSFAYVDILPSSSNSLS 61

Query: 66  KLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNYDDGADLETSAPE----ST 125
           KLF+TYNGC WKGGKL+L KAKEHYL RL+REW ++ E  ++     + +S+ E    + 
Sbjct: 62  KLFNTYNGCVWKGGKLKLGKAKEHYLTRLKREWAKEEEEAHHQ---PMPSSSDEPYNGNK 121

Query: 126 EHVAKSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVPPLP 185
            HV++  H++IFFP L                   VKSLP+SGTG HKY F  VEV  LP
Sbjct: 122 VHVSQQGHLRIFFPRL-----------------TRVKSLPLSGTGKHKYSFQRVEVSALP 181

Query: 186 VHFCDCEEHNVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANCN 245
           +HFCDCEEH+      +  + +  + +  NG + E+E+ MM++V+NKLFER   S+ + +
Sbjct: 182 IHFCDCEEHSGHFNAVRRKEGQ--NHEEINGVMNEEEVSMMSSVMNKLFERANISNTS-S 241

Query: 246 GTMGVKDKDNSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNSKPLPLNSGSKSFKAHGN 305
             +  + +D +K++    PL D +E++D+D L++NV++  +N   +   SGS+  KA   
Sbjct: 242 AILADEREDFTKLI--EGPLSD-EEETDDDDLIINVVSDSNNRAAM---SGSREKKAVST 301

Query: 306 SKVKNYAITIAILSFFPSRFKIYLRGYVYLTGLLKHFGFFVFHSVFIILNFAVEGADRDQ 365
            + K+     +      +  K+                        I+L       +R++
Sbjct: 302 ERFKSSEKQTSEDGPIQNEHKV--------------------QKDDILL------PNRNE 361

Query: 366 KGNSRVQSKKRKSVTNEEFDSNEYVPNISTGSGKGNTNPAYEPVGPSRPQAPDRAMPIQS 425
           KGN  VQ++  +SV   +    E       G  + NT+                      
Sbjct: 362 KGN--VQTQSNESVVVAQTTGAE------CGLKQSNTS---------------------C 421

Query: 426 SRSQKSSWKTLICDKSKASFSISDILPSVPSANEEQPEADALSLAHSSPNRNSDRATAAV 485
           S SQKSSW+ L+ D+S ++FS+S+IL +V +  E+Q  +D   +  +  +RN + A    
Sbjct: 422 SWSQKSSWRALVGDRSNSAFSLSNILQNVGTTKEKQQISDGCKVNKTLDSRNGNLAKPKN 481

Query: 486 LKRKKDKTKPANSNVSFSILDTLPTASSGDQEQTEADDPNRAHSTPNRNSDLATAAVLKR 545
           L+    KT+         I+D  P     +Q +T + +  R  S  +++S +        
Sbjct: 482 LEGMLGKTE---------IVDVEP---QPNQPKTASSNSGRGSSWLHKSSWMQLV----- 513

Query: 546 KKDETKPANSNVSFCISDALPTASSADQKQTEAEDLNLAATDAIFESKSKEMKS---VES 605
                  + ++ SF IS+ +P +++  +      +  + + D    +K+K  KS   V  
Sbjct: 542 -------SENSSSFSISEIVPGSTTKQECTKPIYEDVVYSADGNHSNKTKSHKSEPTVYG 513

Query: 606 SP-----EAENTVRNV-TSNQ 614
           SP     +  +TVR++  SNQ
Sbjct: 602 SPALGVRKEGDTVRSIPESNQ 513

[Close]

BLAST of CmoCh11G009440 vs. TrEMBL
Match: A0A061GQW7_THECC (RNA-binding family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_039820 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 6.2e-54
Identity = 131/302 (43.38%), Postives = 192/302 (63.58%), Query Frame = 1


Query: 6   SASSKLRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSSQSSVS 65
           +A++  RI+VGGLG +++ DDLRKVF +VG  VE +D IR+K RSFAYVD  PSS +S+S
Sbjct: 2   AATASTRIHVGGLGQSVSSDDLRKVFSAVG-TVEGLDIIRAKGRSFAYVDILPSSSNSLS 61

Query: 66  KLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNYDDGADLETSAPE----ST 125
           KLF+TYNGC WKGGKL+L KAKEHYL RL+REW ++ E  ++     + +S+ E    + 
Sbjct: 62  KLFNTYNGCVWKGGKLKLGKAKEHYLTRLKREWAKEEEEAHHQ---PMPSSSDEPYNGNK 121

Query: 126 EHVAKSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVPPLP 185
            HV++  H++IFFP L                   VKSLP+SGTG HKY F  VEV  LP
Sbjct: 122 VHVSQQGHLRIFFPRL-----------------TRVKSLPLSGTGKHKYSFQRVEVSALP 181

Query: 186 VHFCDCEEHNVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANCN 245
           +HFCDCEEH+      +  + +  + +  NG + E+E+ MM++V+NKLFER   S+ + +
Sbjct: 182 IHFCDCEEHSGHFNAVRRKEGQ--NHEEINGVMNEEEVSMMSSVMNKLFERANISNTS-S 241

Query: 246 GTMGVKDKDNSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNSKPLPLNSGSKSFKAHGN 304
             +  + +D +K++    PL D +E++D+D L++NV++  +N   +   SGS+  KA   
Sbjct: 242 AILADEREDFTKLI--EGPLSD-EEETDDDDLIINVVSDSNNRAAM---SGSREKKAVST 273

[Close]

BLAST of CmoCh11G009440 vs. TrEMBL
Match: A0A068V0U5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040558001 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 8.1e-54
Identity = 133/290 (45.86%), Postives = 178/290 (61.38%), Query Frame = 1


Query: 6   SASSKLRIYVGGLGAAMTEDDLRKVFQSVG-GVVEAVDFIRSKSRSFAYVDFFPSSQSSV 65
           +A++  RIYVGGLG  +T +DL+  F S   G VE+V+ +R+K RSFAY+DF PSS   +
Sbjct: 16  TAAASHRIYVGGLGGNVTAEDLKNTFSSPQLGSVESVEIVRTKGRSFAYLDFVPSSDKGL 75

Query: 66  SKLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIM----NYDDGADLETSAPES 125
           +KLFSTYNGC WKG +LRLEKAKEHY+ RLRREWEEDA++     ++D  A +   + E 
Sbjct: 76  AKLFSTYNGCMWKGARLRLEKAKEHYILRLRREWEEDAKLSIDSNSFDGDAVVNMPSLEK 135

Query: 126 T--EHVAKSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVP 185
               H  ++  ++IFFP L +V                 K +P+ GTG HKY FP VEVP
Sbjct: 136 PVKAHNLENTQLRIFFPKLRKV-----------------KPVPLKGTGKHKYSFPRVEVP 195

Query: 186 PLPVHFCDCEEHN-VSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASH 245
           PLP+H CDCEEH+  SD  +KS   +       N GI E+E+ MM++V+NKLFER+  S 
Sbjct: 196 PLPIHLCDCEEHSGSSDAANKSFHREDE-----NDGINEEELSMMSSVMNKLFERENISE 255

Query: 246 ANCNG---TMGVKDKDNSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNS 285
             C     TM      NS  + D Q  ++  + SDED+L++N M  GSNS
Sbjct: 256 TACTKVGFTMEAFVSRNS--VDDIQVDQERDQISDEDNLIMN-MVDGSNS 280

[Close]

BLAST of CmoCh11G009440 vs. TAIR10
Match: AT5G58130.1 (AT5G58130.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-52
Identity = 122/282 (43.26%), Postives = 168/282 (59.57%), Query Frame = 1


Query: 3   EGESASSKLRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSSQS 62
           E +S+   +R++VGGLG ++  DDL K+F  +G  V+AV+F+R+K RSFAY+DF PSS +
Sbjct: 2   EEKSSGGGVRLHVGGLGESVGRDDLLKIFSPMG-TVDAVEFVRTKGRSFAYIDFSPSSTN 61

Query: 63  SVSKLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNYDDGADLETSAPESTE 122
           S++KLFSTYNGC WKGG+LRLEKAKEHYLARL+REWE  A     D+     + +P +T 
Sbjct: 62  SLTKLFSTYNGCVWKGGRLRLEKAKEHYLARLKREWE--AASSTSDNTIKAPSDSPPAT- 121

Query: 123 HVAKSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEV-PPLP 182
                 H+ IFFP L +                 VK +P+SGTG HKY F  V V   LP
Sbjct: 122 ------HLNIFFPRLRK-----------------VKPMPLSGTGKHKYSFQRVPVSSSLP 181

Query: 183 VHFCDCEEHNVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANCN 242
             FCDCEEH+ S  T + +     DL+A N G  E E+ +MN+V+NKLFE+         
Sbjct: 182 RSFCDCEEHSNSSLTPREIHLH--DLEAVNVGRQEAEVNVMNSVMNKLFEKNNV------ 231

Query: 243 GTMGVKDKDNSKILTDNQPLEDNKEDSDEDSLVLNVMASGSN 284
                             P EDN+ ++D+D+L++NV +SG++
Sbjct: 242 -----------------DPEEDNEIEADQDNLIINVASSGND 231

[Close]

BLAST of CmoCh11G009440 vs. NCBI nr
Match: gi|659085871|ref|XP_008443653.1| (PREDICTED: uncharacterized protein LOC103487200 [Cucumis melo])

HSP 1 Score: 445.7 bits (1145), Expect = 1.7e-121
Identity = 227/303 (74.92%), Postives = 252/303 (83.17%), Query Frame = 1


Query: 1   MEEGESASSKLRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSS 60
           ME G+SAS K+RIYVGGLGAAMTEDDLRKVF SVGGVVEAVDF+R+KSRSFAYVDFFPSS
Sbjct: 1   MERGQSASEKMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60

Query: 61  QSSVSKLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNYDDGADLETSAPES 120
           QSS+SKLFSTYNGCAWKGGKLRLEKAKE+YLARL+REWEEDA+I + + GAD+E  APES
Sbjct: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKENYLARLKREWEEDAQIRDSNVGADMEVVAPES 120

Query: 121 TEHVAKSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVPPL 180
           T+HV KSEHI IFFPSLGE                 VKSLPISGTGTHKYDFPHVEVPP 
Sbjct: 121 TQHVTKSEHINIFFPSLGE-----------------VKSLPISGTGTHKYDFPHVEVPPF 180

Query: 181 PVHFCDCEEHNVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANC 240
           PVHFCDCEEH+VS P   S D KT DL+A NGG+ EDEI+MMN V+NKLFER+EAS +NC
Sbjct: 181 PVHFCDCEEHDVSSPIGNSKDTKTRDLNAENGGMAEDEIEMMNAVMNKLFEREEASQSNC 240

Query: 241 NGTMGVKDKDNSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNSKPLPLNSGSKSFKAHG 300
           NG+M + DK NS +LTDNQ LEDNK D DED+LVLNVMAS  NSK + LNSG+K FKAHG
Sbjct: 241 NGSMALNDKHNSTMLTDNQLLEDNKVDCDEDNLVLNVMASNCNSKSMALNSGNKIFKAHG 286

Query: 301 NSK 304
           NSK
Sbjct: 301 NSK 286

[Close]

BLAST of CmoCh11G009440 vs. NCBI nr
Match: gi|778664026|ref|XP_004139156.2| (PREDICTED: uncharacterized protein LOC101203716 [Cucumis sativus])

HSP 1 Score: 433.0 bits (1112), Expect = 1.1e-117
Identity = 224/303 (73.93%), Postives = 245/303 (80.86%), Query Frame = 1


Query: 1   MEEGESASSKLRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSS 60
           ME+G+SAS  +RIYVGGLGAAMTEDDLRKVF SVGGVVEAVDF+R+KSRSFAYVDFFPSS
Sbjct: 1   MEKGQSASENMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRTKSRSFAYVDFFPSS 60

Query: 61  QSSVSKLFSTYNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNYDDGADLETSAPES 120
           QSS+SKLFSTYNGCAWKGGKLRLEKAKE+YLARL REWEEDA+I + + GAD+E  APES
Sbjct: 61  QSSLSKLFSTYNGCAWKGGKLRLEKAKENYLARLNREWEEDAQIRDNNVGADMELVAPES 120

Query: 121 TEHVAKSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVPPL 180
           TEHV KSEHI IFFPSLGE                 VK LPISGTGTHKYDFPHVEVPP 
Sbjct: 121 TEHVTKSEHINIFFPSLGE-----------------VKPLPISGTGTHKYDFPHVEVPPF 180

Query: 181 PVHFCDCEEHNVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANC 240
           PVHFCDCEEHN S P   S   KT DL+A NGG+ EDEIKMMN VL+KLFER+EAS +NC
Sbjct: 181 PVHFCDCEEHNASSPIGNSKYTKTRDLNAENGGMDEDEIKMMNAVLSKLFERKEASQSNC 240

Query: 241 NGTMGVKDKDNSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNSKPLPLNSGSKSFKAHG 300
           N +M + DK NS   TDNQ LEDNK DSDED+LVLNVMAS  NSK + LN G+K FKAHG
Sbjct: 241 NDSMALNDKHNSTTSTDNQLLEDNKVDSDEDNLVLNVMASNCNSKTMALNRGNKIFKAHG 286

Query: 301 NSK 304
           NSK
Sbjct: 301 NSK 286

[Close]

BLAST of CmoCh11G009440 vs. NCBI nr
Match: gi|694402685|ref|XP_009376332.1| (PREDICTED: uncharacterized protein LOC103965038 [Pyrus x bretschneideri])

HSP 1 Score: 242.3 bits (617), Expect = 2.8e-60
Identity = 254/788 (32.23%), Postives = 374/788 (47.46%), Query Frame = 1


Query: 11  LRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSSQSSVSKLFST 70
           +RI+VGGLG  +TE DLR++F S GG VE VD +R+K RSFAYVDF PS   S+SKLF+T
Sbjct: 34  IRIHVGGLGGTVTEVDLRRMF-SGGGTVEGVDIVRTKGRSFAYVDFRPSDDKSLSKLFTT 93

Query: 71  YNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNY-----DDGADLETSAPESTEHVA 130
           YNGCAWKGGKLRL+KAKE Y  RL+REW+EDA  +       DD  D++ S   ST   +
Sbjct: 94  YNGCAWKGGKLRLQKAKEDYPVRLQREWDEDAARLAAAPPPPDDAHDIKHSLSHSTNTSS 153

Query: 131 -KSEHIQIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVPPLPVHF 190
             ++ ++IFFP+L                  TVK+LP +GTG HKY F  ++ P LPVHF
Sbjct: 154 NNAKQLRIFFPAL-----------------RTVKALPFTGTGKHKYSFQRLQTPSLPVHF 213

Query: 191 CDCEEHNV---SDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANCN 250
           CDCEEH V   S PT+   +    D    + GI E E+ +M  V++KLF+ Q  ++   +
Sbjct: 214 CDCEEHYVPVPSQPTTTKPNQTQSDKLLCDNGINEQELNIMTKVMDKLFQTQNETNVAHD 273

Query: 251 GTMGVKDKDNSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNSKPLPLNSGSKSFKAHGN 310
           GT     + +   L    P        DED+L++NV++  SN + +   S  + FK+   
Sbjct: 274 GT---HQQPHQLHLAATTP-------PDEDNLIINVVS--SNQEKVEKLSEFQEFKSTET 333

Query: 311 SKVKNYAITIAILSFFPSRFKIYL-----RGYVYLTGLLKHFGFFVFHSVFIILNFAVEG 370
             +K    +       PS  +I +     +    L G   H                +E 
Sbjct: 334 QALKGKRSS-------PSEAQININEPPKKKRKSLPGDYNH-------------QKELEA 393

Query: 371 ADRDQKGNSRVQSKKRKSVTNEEFDSNEYVPNISTGSGKGNTNPAYEPVGPSRPQAPDRA 430
           A    K N   QSK                      SGK      +    P +P+   + 
Sbjct: 394 ALSGSKKNLPTQSKV---------------------SGK------FFGAQPDQPELGQQ- 453

Query: 431 MPIQSSRSQKSSWKTLICDKSKASFSISDILPSV-PSANEEQPEADA--LSLAHSSPNRN 490
              Q S SQKSSW+ LI  +  +SFS+S +L  + PSA++ + ++ +  +SL+ S     
Sbjct: 454 ---QVSWSQKSSWRQLIGHRGSSSFSVSHVLTRIAPSADQVETKSGSSEVSLSDSENQDL 513

Query: 491 SDRATAAVLKRKKDKTKPANSNVSFSILDTLPTASSGDQEQTEADDPNRAHSTPNRNSDL 550
                +     + +  +P  S V  S   +   ASS DQ + ++       S  + N DL
Sbjct: 514 ESNGNSEDQPSEMELVEPTKS-VVVSNKSSGRGASSTDQVEPKSVSLEVLLS-DSENQDL 573

Query: 551 ATAAVLKRKKD-----ETKPANS-NVSFCISDALPTASSADQKQTEAEDLNLAATDA--- 610
            +   L+ +       E +P  S  +S   S   P  SSADQ + ++    +  +D+   
Sbjct: 574 ESNENLEDQPSDMELVEPQPTKSIGISNEFSGRRP--SSADQVEPKSGSPEVPLSDSESQ 633

Query: 611 ------IFESKSKEMKSVESSPEAENTVRNVTSNQGRGAAWKQKSSWTQLVSQEA-TSFS 670
                   E +  +M+ VE  P     V N  S  GRG++W+++SSWTQLV+    +SFS
Sbjct: 634 DPESNENLEDQPSDMELVEPQPTKSVVVSNKLS--GRGSSWRRQSSWTQLVNDNTDSSFS 693

Query: 671 ITQILSNNTSEKQVQRESDVINVNLFAPSENKDSIEQQIQSTAADDSAAFVVAKDETACY 730
           I QI+   +SE+QV     + N     P  + D    ++     D   + +    E +  
Sbjct: 694 IKQIVPGISSEQQV-----LPNPKGADPVSSTDCKLMEMVKQDNDKGRSCLGIGREDSVL 723

Query: 731 DVKKNDQPAVQENEPSPTEAIERHIKPQEAGSFHAKSGETCCPFMRNSRSVAEWTKIKAA 766
                D     +    P +     I P++A + + + GET C FMR + S+ EW KIK A
Sbjct: 754 LGSLEDTIVDNDGAYDPDD-----ITPKQASAANIEIGET-CSFMRTASSLKEWAKIKVA 723

[Close]

BLAST of CmoCh11G009440 vs. NCBI nr
Match: gi|1009163016|ref|XP_015899742.1| (PREDICTED: uncharacterized protein LOC107433013 [Ziziphus jujuba])

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 129/279 (46.24%), Postives = 181/279 (64.87%), Query Frame = 1


Query: 11  LRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSSQSSVSKLFST 70
           LRI+VGGLG ++ E+++ ++F+SVGGVVE V+ +R+K RSFAYVDF PSS  S+SKLF T
Sbjct: 13  LRIFVGGLGESIVENEVSRIFESVGGVVEGVELVRTKGRSFAYVDFLPSSDKSLSKLFGT 72

Query: 71  YNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNYDDGADLETSAPESTEHVAKSEHI 130
           YNGC WKGG+LRLEKAKEHYL RLRREW ED+  +     A ++TS      + ++ + +
Sbjct: 73  YNGCVWKGGRLRLEKAKEHYLLRLRREWAEDSAQV-----ATVDTSELPKNLNPSEKKQL 132

Query: 131 QIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVPPLPVHFCDCEEH 190
           QIFFP L +                 VKS+P SGTG HKY F  VEVP LP HFCDCEEH
Sbjct: 133 QIFFPRLRK-----------------VKSIPFSGTGKHKYSFQRVEVPSLPTHFCDCEEH 192

Query: 191 NVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANCNGTMGVKDKD 250
             S P+   +  ++  L+  +GG+ ++E+ +MN V+ +LFE+Q +S    N T    +K 
Sbjct: 193 --SYPSQTEIKKRSRGLEEQSGGMTQEELNIMNAVMERLFEKQNSSVLTHNKTASCNNKG 252

Query: 251 NSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNSKPLPL 290
           NS    D Q  ++  +++DED+L++NV+  G+  + L L
Sbjct: 253 NSLKSIDEQHFDE--DEADEDNLIINVVRKGNKREALYL 265

[Close]

BLAST of CmoCh11G009440 vs. NCBI nr
Match: gi|1009163041|ref|XP_015899752.1| (PREDICTED: putative uncharacterized protein DDB_G0282133 [Ziziphus jujuba])

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 128/277 (46.21%), Postives = 180/277 (64.98%), Query Frame = 1


Query: 11  LRIYVGGLGAAMTEDDLRKVFQSVGGVVEAVDFIRSKSRSFAYVDFFPSSQSSVSKLFST 70
           LRI+VGGLG ++ E+++ ++F+SVGGVVE V+ +R+K RSFAYVDF PSS  S+SKLF T
Sbjct: 13  LRIFVGGLGESIVENEVSRIFESVGGVVEGVELVRTKGRSFAYVDFLPSSDKSLSKLFGT 72

Query: 71  YNGCAWKGGKLRLEKAKEHYLARLRREWEEDAEIMNYDDGADLETSAPESTEHVAKSEHI 130
           YNGC WKGG+LRLEKAKEHYL RLRREW ED+  +     A ++TS      + ++ + +
Sbjct: 73  YNGCVWKGGRLRLEKAKEHYLLRLRREWAEDSAQV-----ATVDTSELPKNLNPSEKKQL 132

Query: 131 QIFFPSLGEVILCLRSFHFEMIQSMTVKSLPISGTGTHKYDFPHVEVPPLPVHFCDCEEH 190
           QIFFP L +                 VKS+P SGTG HKY F  VEVP LP HFCDCEEH
Sbjct: 133 QIFFPRLRK-----------------VKSIPFSGTGKHKYSFQRVEVPSLPTHFCDCEEH 192

Query: 191 NVSDPTSKSMDAKTGDLDAGNGGIGEDEIKMMNTVLNKLFERQEASHANCNGTMGVKDKD 250
             S P+   +  ++  L+  +GG+ ++E+ +MN V+ +LFE+Q +S    N T    +K 
Sbjct: 193 --SYPSQTEIKKRSRGLEEQSGGMTQEELNIMNAVMERLFEKQNSSVLTHNKTASCNNKG 252

Query: 251 NSKILTDNQPLEDNKEDSDEDSLVLNVMASGSNSKPL 288
           NS    D Q  ++  +++DED+L++NV+  G+  + L
Sbjct: 253 NSLKSIDEQHFDE--DEADEDNLIINVVRKGNKREAL 263

The following BLAST results are available for this feature:

BLAST of CmoCh11G009440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G009440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXQ1_CUCSA	7.9e-118	73.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651690 PE=4 SV=1	[more]
A0A067K686_JATCU	3.0e-56	44.76	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19789 PE=4 SV=1	[more]
A0A061GRV1_THECC	3.6e-54	31.88	RNA-binding family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_039820 ...	[more]
A0A061GQW7_THECC	6.2e-54	43.38	RNA-binding family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_039820 ...	[more]
A0A068V0U5_COFCA	8.1e-54	45.86	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040558001 PE=4 SV=1	[more]

BLAST of CmoCh11G009440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58130.1	2.3e-52	43.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh11G009440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085871\|ref\|XP_008443653.1\|	1.7e-121	74.92	PREDICTED: uncharacterized protein LOC103487200 [Cucumis melo]	[more]
gi\|778664026\|ref\|XP_004139156.2\|	1.1e-117	73.93	PREDICTED: uncharacterized protein LOC101203716 [Cucumis sativus]	[more]
gi\|694402685\|ref\|XP_009376332.1\|	2.8e-60	32.23	PREDICTED: uncharacterized protein LOC103965038 [Pyrus x bretschneideri]	[more]
gi\|1009163016\|ref\|XP_015899742.1\|	1.1e-59	46.24	PREDICTED: uncharacterized protein LOC107433013 [Ziziphus jujuba]	[more]
gi\|1009163041\|ref\|XP_015899752.1\|	1.8e-59	46.21	PREDICTED: putative uncharacterized protein DDB_G0282133 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G009440.1	CmoCh11G009440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 13..57 score: 5.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 12..84 score: 4.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 11..88 score: 12
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..88 score: 1.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 12..98 score: 1.02
None	No IPR available	PANTHER	PTHR23099	TRANSCRIPTIONAL REGULATOR	coord: 1..223 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G009440	Cucsa.356330	Cucumber (Gy14) v1	cgycmoB0973
CmoCh11G009440	CmaCh11G009220	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G009440	Cla002184	Watermelon (97103) v1	cmowmB087
CmoCh11G009440	Csa1G651690	Cucumber (Chinese Long) v2	cmocuB075
CmoCh11G009440	MELO3C010014	Melon (DHL92) v3.5.1	cmomeB099
CmoCh11G009440	ClCG03G011600	Watermelon (Charleston Gray)	cmowcgB101
CmoCh11G009440	CSPI01G31930	Wild cucumber (PI 183967)	cmocpiB078
CmoCh11G009440	Lsi06G006640	Bottle gourd (USVL1VR-Ls)	cmolsiB118
CmoCh11G009440	Cp4.1LG00g01420	Cucurbita pepo (Zucchini)	cmocpeB079
CmoCh11G009440	MELO3C010014.2	Melon (DHL92) v3.6.1	cmomedB107
CmoCh11G009440	CsaV3_1G044190	Cucumber (Chinese Long) v3	cmocucB0090
CmoCh11G009440	Cla97C03G061910	Watermelon (97103) v2	cmowmbB101
CmoCh11G009440	CsGy1G030940	Cucumber (Gy14) v2	cgybcmoB027
CmoCh11G009440	Carg22712	Silver-seed gourd	carcmoB0727

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G009440	Melon (DHL92) v3.6.1	cmomedB104
CmoCh11G009440	Silver-seed gourd	carcmoB1298
CmoCh11G009440	Wax gourd	cmowgoB0159
CmoCh11G009440	Cucurbita moschata (Rifu)	cmocmoB044
CmoCh11G009440	Melon (DHL92) v3.5.1	cmomeB097
CmoCh11G009440	Cucurbita maxima (Rimu)	cmacmoB074
CmoCh11G009440	Cucurbita pepo (Zucchini)	cmocpeB104