Lsi06G006150 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Expansin-like A1
Location	chr06 : 8546746 .. 8550327 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGGTTTCTTGGTTTGCTCTTCTTCCTTCTTGTCTCTTATTCCACTGCTTGTGATCGTTGTGTTCATCTATCAAAAGCTACTCACTATCATTATGACGTGCCTGCTTCATGTGAGAGAATTTAGTCTCTATTTGATTACGATTTCATTTTTTTTATTTTCTTTTTAAAATATATACTTGTTTTCTTTTCAAATTTTCACTGTGTTGTTTTTAAATATAGAAAAATGAACAAAACTATTTACAAATATAGAATTCTATCGCGGTCTATCGCTAATAACAATGAAATTTTTCTACATTTGTAAATAGTTTGATATTATTTCTGTTTATAGTAATTTTTCATTTTCAATTATATTTTTTTTACTTTTTTCAAATGAATACGTGAATTCTTAATCAAATTCTAAAAATAAAAATAAATTTTTTAAAGCTATTTTTTTTTAATCTTCCAGTTTTCACAATTTGACTTTGTTTATTAAAATATTATTATTAAGAAATTGTGTAAGAAAACTTATGCATTGAAGTAGTGTTTATAAACTTGATTTTCTAAAATCAAATGATAAACAAACCTTCATGCCTCTTTGGTAGCCATTTTCTTTTTTGTTTTTGGTTTTTAAAAATGCATATTTCCTCCCAATTTCTTACAATGATTTGTATCTTTGTTAAGTACAATGGTTGAATTTAAGCCAAATTTCAAAAACAAAAACAAGTTTTTAAAAACTATTTTTTTTTTTTAGTTTTAAAAAATTGGCTTGATTTTTTAAACCATCAGTAAAAGGTAGATAACAAATGAAGAAATTTAGAGTTGGAAGTAGTGTATATAGGCTTAATTTTCAAAAACAAAAAACTAAAAATCAAATGATTACCAAACGAGACCTTCGTTTTTTGTTTTTAAAAATTAAGTATATTTTCTCACATTTTCTTACAATGGCGTGCATCTTTATTGTATACAAGAGTTAAATTCTTAGCCAAATTCCAAAAACAAAAACAATTTTTTTAAAAAAACTACTGTTTTTAGTTTTCAAAATTTGGCTTGTTTTTTAAAACATAGATAAAAGTAGATAAAAAAACAAGACATTTAGGGGTGAGAGAGGTGTTTGTAGGCTTGATTTTCAAAAACCAAATGGTTACCAAACGATGCTTTAATTTTTTTTTTTTTTTTTCAAATTTTTTACTATCCCATTAAAAATGGTATATTTTCGATTATAAAAAGACAATTATTATGATGAAGAAAACTTAGTTAACATGAATTTTGTTGGGTGTATGATGATATACAACAGATGGATCAACATGTGGATATGGAAAATTAGAGTTTGAAATTTCCAAAGGATACTTTGCAGCTGTTGTGCCTTCCCTTTATAAAGAAGGAGCTTCTTGTGGTGCTTGCTATCAAGTAATTAATATATACATATATATATATATATATATTTCATTTTCCCCATTATTTTATTTTCTTTTATTTTCCTTTTGAAAATGTTAAGGATAAATGCATTGGTTTTGTAGGTAAGATGTATGAACAAGACAATATGCAAGTCAATAGGGACTAAAGTAGTTGTGACAGATATACATTACAATAATGGAACTGATTTTGTTCTAAGTAAAAAAGCTTTCTCTACCATGGCTTTAAGTGGCAAAACTCAACAACTTTTGAATATTGATAGCATCCACGTCGAATACAAGAGGTAAATCATACTTGTCCTATTTGATATATGAAACTAGTAATGTGAAAATCAACTCGTTTACGTCCGATTTGGTAACTATTTGGTTTTTGGTTTTTGAAAATTAAGTCTATAATCACTTCTCCTACTTCTAAATTTCTTGCTTTCTTATCTGCTTTTTATCTTTGTTTTCAAAAACCAAGTCAAATTTTGAAAATAAAAAAAAGTAGTTTTTGTTTTTAGAATTTGGTTAAGAATGCAACTCTTGTAATTAAGAAATATGTAAAACATTGTAAGAAAGTGAGAGGTTAGCTTAATTCTTAAAAACCAAAAACCTAAAACTAAGGTCCCGTTTGGTAACCATTTTGTTTTTGGTTTTTGAAAATTAAACCTATTTCCTCCGCATTTCTTACAATGATTTGTATCACTCTTAATACAACAGTTGAATTCTTAGCCAAATTCTAACAATAATAGTAAGTTTTTTAAAAGCTACTTTTTTTTTTTTTCAATTTTCGAATTTTGGGTAGGTTTTTTAAATCATTGGTGAAAAATAGTTATCAATAGAAGAAATTTGAAGGTGGAAATAGTGTCTGTAAGCTTAATTTTCAAAAACAAAAACAAAAACAAAAAAACCAAATGGTTATCAAACAGGCCTAAATGGTTTTATCAAACAGGGTCTTAGCTGTTGTTTGGTAACAATTGTGTTCTTAGTTTATAGTTTTTGAAATTCATGCTTGTTTCTTCCCAAATTTTAATTTTAATTATACATGGTTACACTAATTTGTTAAGAAAACACACAAATTCCTAATAAAATTCTGAAAACAAAAATAAGTTTTTGAATTTGTTTTAGTTGTTCAAAACTTGGCTTGGGTTTTTAAAACAATATTTAATAGAAAGGGGATAACAAAATATAACTTGTTGGGAGAAAAACCTCACACCATTACTACAAGATTAAACAAAAAAATAATCAAGAAATTAAAAAAAAAACTAGAAACACAAAAATTGACGTGTGAAAAACCCAAATAACTCGACCGGAGAAAAACTACGACCCACTAGTATGAAATTCACTATATGGAAATATTTTATAATCCTTTAAAATTCTCTCCTCAATTCCAATTCAAAATGCACTAAATCTCAAAGCTTTTGTACCACTTACGCCATTTTTCCATCTCTCAACTAGAGAATATATACAAAAGAAAGAATTCAACTAAAGTTATTACACCCAAATTCAAAGTGCTTATAGCTTGAAATGATTAGTCTTAAGTCGCCGATTGAGCCAAAAGCTTAAGCTGATGGGTTTGAACACAATATCTCCTAAACCACCTTCTCTAATATTATCCTAAATCACCAATTGACCAAAAAACTTAAACTGATAAGTAAAAGACAAATTTAATATTATATCATCTAACAACTAGCAAAGAAAGCTTAATTTGGTGGTATTTTTATGTTACAGGATACCATGTGAATACAAAAACAAAAATTTATTGGTGGAAATTGTAGAATGGAGCCATAAACCCGAAGTTTTGGCTATAAAATTCCTATACCAAGGTGGCCAAACTGACATACTAGCAGTTAACATAACTCAGGTTAGTTAAAATTCAATATATATATATATATATATATAACCCAATATTAAGTATTGTTTTTGTGGAATAATTGAATTATATTTGACAGGTTGAGTTTAAAGAATGGAGTCCTATGATAAGGAACTTTGGTGCTATTTGGTATATACCAAATGTAGTTGAAGGAGCATTAAAGATGAAAATGATGGTAATTTCTGGATACAATAACAAGTGGATTTCAACAAAATATGCAATTCCTGCTGATTGGAAAAATGGAAACATTTATGATACTGGGATTCAAATCAAGGATATCACTATGGAGAATTGCCCATCTAACAAATGTGGTGTCAAGTCATGGAAATGA

mRNA sequence

ATGGCTTGGTTTCTTGGTTTGCTCTTCTTCCTTCTTGTCTCTTATTCCACTGCTTGTGATCGTTGTGTTCATCTATCAAAAGCTACTCACTATCATTATGACGTGCCTGCTTCATATGGATCAACATGTGGATATGGAAAATTAGAGTTTGAAATTTCCAAAGGATACTTTGCAGCTGTTGTGCCTTCCCTTTATAAAGAAGGAGCTTCTTGTGGTGCTTGCTATCAAGTAAGATGTATGAACAAGACAATATGCAAGTCAATAGGGACTAAAGTAGTTGTGACAGATATACATTACAATAATGGAACTGATTTTGTTCTAAAATGGAGCCATAAACCCGAAGTTTTGGCTATAAAATTCCTATACCAAGGTGGCCAAACTGACATACTAGCAGTTAACATAACTCAGGTTGAGTTTAAAGAATGGAGTCCTATGATAAGGAACTTTGGTGCTATTTGGTATATACCAAATGTAGTTGAAGGAGCATTAAAGATGAAAATGATGGTAATTTCTGGATACAATAACAAGTGGATTTCAACAAAATATGCAATTCCTGCTGATTGGAAAAATGGAAACATTTATGATACTGGGATTCAAATCAAGGATATCACTATGGAGAATTGCCCATCTAACAAATGTGGTGTCAAGTCATGGAAATGA

Coding sequence (CDS)

ATGGCTTGGTTTCTTGGTTTGCTCTTCTTCCTTCTTGTCTCTTATTCCACTGCTTGTGATCGTTGTGTTCATCTATCAAAAGCTACTCACTATCATTATGACGTGCCTGCTTCATATGGATCAACATGTGGATATGGAAAATTAGAGTTTGAAATTTCCAAAGGATACTTTGCAGCTGTTGTGCCTTCCCTTTATAAAGAAGGAGCTTCTTGTGGTGCTTGCTATCAAGTAAGATGTATGAACAAGACAATATGCAAGTCAATAGGGACTAAAGTAGTTGTGACAGATATACATTACAATAATGGAACTGATTTTGTTCTAAAATGGAGCCATAAACCCGAAGTTTTGGCTATAAAATTCCTATACCAAGGTGGCCAAACTGACATACTAGCAGTTAACATAACTCAGGTTGAGTTTAAAGAATGGAGTCCTATGATAAGGAACTTTGGTGCTATTTGGTATATACCAAATGTAGTTGAAGGAGCATTAAAGATGAAAATGATGGTAATTTCTGGATACAATAACAAGTGGATTTCAACAAAATATGCAATTCCTGCTGATTGGAAAAATGGAAACATTTATGATACTGGGATTCAAATCAAGGATATCACTATGGAGAATTGCCCATCTAACAAATGTGGTGTCAAGTCATGGAAATGA

Protein sequence

MAWFLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDFVLKWSHKPEVLAIKFLYQGGQTDILAVNITQVEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDTGIQIKDITMENCPSNKCGVKSWK

Homology

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BLAST of Lsi06G006150 vs. Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-37
Identity = 90/257 (35.02%), Postives = 129/257 (50.19%), Query Frame = 1


Query: 4   FLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVPS 63
           +L ++ FL  S   ACDRC+H SKA+++      S G+ C YG +      G+ AA +PS
Sbjct: 6   YLIVVIFLFSSSVNACDRCLHRSKASYFSSASALSSGA-CAYGPMATSFFAGHIAAAIPS 65

Query: 64  LYKEGASCGACYQVRC---------------------------MNKTICKSIGTKVV--- 123
           +YK+GA CGAC+QVRC                           ++    +++   VV   
Sbjct: 66  IYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVD 125

Query: 124 -------VTDIHYN---------NGTDFVLKWSHKPEVLAIKFLYQGGQTDILAVNITQV 183
                  + D+ Y          N    V + S KP  LAIK LYQGGQT+++ ++I  V
Sbjct: 126 KYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPV 185

Query: 184 EFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDTG 215
              +WS M R+ GA+W    V  GAL+ K  V  GY+ K + +K  +PA+W +G IYD G
Sbjct: 186 GSSQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAG 245

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BLAST of Lsi06G006150 vs. Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-25
Identity = 81/262 (30.92%), Postives = 115/262 (43.89%), Query Frame = 1


Query: 4   FLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVPS 63
           FL ++ FL  S   ACDRC+H SKA ++      S G+ C YG +      G+ AA +PS
Sbjct: 6   FLIVVIFLFSSSVNACDRCLHRSKAAYFSSASALSSGA-CAYGSMATSFFAGHIAAAIPS 65

Query: 64  --------------LYKEGASCG---------------------ACYQVRCMNKTICKSI 123
                           K    C                      +    R M K I  + 
Sbjct: 66  IYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGAD 125

Query: 124 GT--KVVVTDIHYN---------NGTDFVLKWSHKPEVLAIKFLYQGGQTDILAVNITQV 183
               K  + DI Y          N    V + S KP  L IK LYQGGQT++++++I QV
Sbjct: 126 KDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQV 185

Query: 184 -EFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDT 219
                W  M R+ GA+W    V  GA++ + +V  GY+ K I ++  +P++W+ G IYD 
Sbjct: 186 GSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDA 245

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BLAST of Lsi06G006150 vs. Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-24
Identity = 78/251 (31.08%), Postives = 111/251 (44.22%), Query Frame = 1


Query: 4   FLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVP- 63
           FL  +  L  S + ACDRC+H SKA ++      S G+ C YG +      G+ AA +P 
Sbjct: 7   FLLSVVLLFSSSAAACDRCLHSSKAAYFSSASALSSGA-CAYGSMATGFFAGHIAAALPS 66

Query: 64  -------------SLYKEGASCGA---------------------CYQVRCMNKTICKSI 123
                           K    C +                         R M K +  + 
Sbjct: 67  IYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGAD 126

Query: 124 GT--KVVVTDIHYNN-GTDF--------VLKWSHKPEVLAIKFLYQGGQTDILAVNITQV 183
               K  + DI Y     D+        V + S  P  LAIK LYQGGQT+++A+ I QV
Sbjct: 127 RDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQV 186

Query: 184 EFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDTG 209
               WS M R+ GA+W    V  GAL+ + +V +GY+ K + ++  +PA+W+ G  YD G
Sbjct: 187 GSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAG 246

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BLAST of Lsi06G006150 vs. Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.8e-23
Identity = 53/141 (37.59%), Postives = 79/141 (56.03%), Query Frame = 1


Query: 80  MNKTICKSIGTKVVVTDIHYNNGTDFVLKWSHKPEVLAIKFLYQGGQTDILAVNITQVEF 139
           + K    S+  + +  D    N +  V + S +P  L IKFLYQGGQTDILAV++ QV  
Sbjct: 138 LKKLDALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGS 197

Query: 140 KEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWI-STKYAIPADWKNGNIYDTGI 199
            +W  M R +G +W I     G L+ + +V  GY+ KW+ + +  +PA+W+ G +YDTG 
Sbjct: 198 SDWRFMTRVYGPVWSIDRAPNGPLQFRAVVTGGYDGKWVWADREVLPANWQPGQVYDTGA 257

Query: 200 QIKDITMENCPSNKCGVKSWK 220
           +I D+  E+C    C    WK
Sbjct: 258 RIADVARESCLD--CATLDWK 276

[Close]

BLAST of Lsi06G006150 vs. Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-22
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 110 SHKPEVLAIKFLYQGGQTDILAVNITQVEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMV 169
           S  P  L I FLYQGGQTDI+AV++ QV    W  M R  G  W + N   G L+M+++V
Sbjct: 171 SRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPSWSMANAPPGPLQMRLVV 230

Query: 170 ISGYNNKWI-STKYAIPADWKNGNIYDTGIQIKDITMENCPSNKCGVKSWK 220
             GY+ KW+ + +  +P  W+ G +YDTG+QI DI  E C    C    WK
Sbjct: 231 TGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGC--FPCDTHEWK 279

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BLAST of Lsi06G006150 vs. TrEMBL
Match: A0A0A0K1G6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019830 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.6e-63
Identity = 117/224 (52.23%), Postives = 153/224 (68.30%), Query Frame = 1


Query: 1   MAWFLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 60
           MAWFL L FF LVS++ ACDRC+H SKATHY+ D P SYG  CGYG +  E + GYF+A 
Sbjct: 1   MAWFLSLFFFFLVSFTNACDRCIHRSKATHYYGDSPTSYGGACGYGDMALEFTNGYFSAA 60

Query: 61  VPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDFVLKWSHKP-EVLAIK 120
           VPSLYK+GA CGAC+QVRC +K +C + G+KVV+TD +Y++  DFVL  S K    +A+K
Sbjct: 61  VPSLYKQGAGCGACFQVRCKDKRLCNTAGSKVVLTDQNYDSRADFVL--SRKAFSAMALK 120

Query: 121 ----FLYQGGQTDILAVNITQVEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNN 180
                L   G  D+    IT+V   EW  + RN+GA+W    V +GAL+M+M   SGY+ 
Sbjct: 121 GKGQELLNTGIVDVEYKRITRVGSYEWVSLRRNYGAVWDTSKVPKGALQMRMAFTSGYDG 180

Query: 181 KWISTKYAIPADWKNGNIYDTGIQIKDITMENCPSNKCGVKSWK 220
           KW+  +Y +P DWK G IYDTG+QI DI  E+CP+++CG K WK
Sbjct: 181 KWVWAEYVLPVDWKVGAIYDTGVQIYDIAKESCPTSQCGDKPWK 222

[Close]

BLAST of Lsi06G006150 vs. TrEMBL
Match: A0A0A0K2Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019840 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.8e-52
Identity = 113/237 (47.68%), Postives = 143/237 (60.34%), Query Frame = 1


Query: 1   MAWFLGLLFFLLVSYSTA----CDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGY 60
           M WFL +  FLLVS +TA    C+RC+H SKA +Y+ D P SYG  CGYG L  EIS+GY
Sbjct: 1   MYWFL-IFLFLLVSSTTASFPPCNRCLHQSKAAYYYEDSPTSYGGACGYGNLALEISQGY 60

Query: 61  FAAVVPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDFVLKWSHKPEVL 120
           FAA VPSLYK GA CGACYQVRC +  +C + GTK+V+TD + +N TD VL        +
Sbjct: 61  FAAAVPSLYKGGAGCGACYQVRCKDTYLCNTAGTKIVLTDQNNDNRTDIVLS-KKAFSAM 120

Query: 121 AIKFLYQ------------------GGQTDILAVNITQVEFKEWSPMIRNFGAIWYIPNV 180
           A+K   Q                   G T    +N  +V   +W PM RN+G IW I  V
Sbjct: 121 ALKGKAQQLLNTGLVDIEYKRCGLITGSTKNYILNPQKVGLPKWRPMKRNYGGIWDINGV 180

Query: 181 VEGALKMKMMVISGYNN-KWISTKYAIPADWKNGNIYDTGIQIKDITMENCPSNKCG 215
            +G L+++M+V S Y+N KWI     +P+DWKNG IYDTG+QI DI  E CP  +CG
Sbjct: 181 PKGGLQLRMVVTSRYDNGKWIWAGSVLPSDWKNGEIYDTGVQINDIAYEYCPPWQCG 235

[Close]

BLAST of Lsi06G006150 vs. TrEMBL
Match: A0A0D2NI99_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G257500 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-51
Identity = 114/259 (44.02%), Postives = 150/259 (57.92%), Query Frame = 1


Query: 4   FLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVPS 63
           FL +L FL++S +TACDRCVH SKA+++  D  AS G+ CGYG L   IS G+ AA V S
Sbjct: 6   FLCMLLFLVLSSATACDRCVHQSKASYFS-DAAASSGA-CGYGSLALTISGGHLAAGVSS 65

Query: 64  LYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDF------------------ 123
           L+K+GA CGAC+Q+RC +  +C S GTKV +TD+++NN TDF                  
Sbjct: 66  LHKQGAGCGACFQIRCKDSKLCSSKGTKVTLTDLNHNNQTDFVLTSRAFMAMANKGKGQD 125

Query: 124 VLKW--------------------------SHKPEVLAIKFLYQGGQTDILAVNITQVEF 183
           VLK                           S KP  LAIK LYQGGQT+I+A+++ QV  
Sbjct: 126 VLKLGIVDVEYKRMPCEYKNQNLAIRVEESSQKPYYLAIKLLYQGGQTEIVAIDVAQVGS 185

Query: 184 KEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDTGIQ 219
             W  M RN+GA+W    V  GAL+ + +V SGY+ KW+  K  +PADWK G IYD+G+Q
Sbjct: 186 SNWIFMTRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWVWAKNVLPADWKIGVIYDSGVQ 245

[Close]

BLAST of Lsi06G006150 vs. TrEMBL
Match: B9T775_RICCO (Beta-expansin 1a, putative OS=Ricinus communis GN=RCOM_0235100 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.9e-51
Identity = 112/263 (42.59%), Postives = 148/263 (56.27%), Query Frame = 1


Query: 1   MAWFLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 60
           MA FL  LFFL +S +TACDRC H SKA ++      S G+ CGYG      + G+ AA 
Sbjct: 1   MAVFLFFLFFL-ISSATACDRCPHQSKAAYFSKASQLSSGA-CGYGSSAIGFNSGHLAAG 60

Query: 61  VPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDF--------------- 120
           VP+L+K GA CGAC+Q+RC NKT+C S GT V++TD+++NN TDF               
Sbjct: 61  VPTLFKGGAGCGACFQIRCRNKTMCSSKGTTVILTDLNHNNQTDFVLSSRAFMAMANKGM 120

Query: 121 -----------------------------VLKWSHKPEVLAIKFLYQGGQTDILAVNITQ 180
                                        V + S KP  LAIK LYQGGQT+I+A+++ Q
Sbjct: 121 GQDILRLGIVDIEYKRVPCVYKNQNLAVRVEESSQKPNYLAIKVLYQGGQTEIVAMDVAQ 180

Query: 181 VEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDT 220
           V    WS M RN+GA+W    V  GAL+ + +V +GY+ KWI  K  +PADWK G +YD+
Sbjct: 181 VGSSNWSYMSRNYGAVWDTSRVPGGALQFRFVVTAGYDGKWIWAKSVLPADWKPGVVYDS 240

[Close]

BLAST of Lsi06G006150 vs. TrEMBL
Match: A0A0L9V8X1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g193100 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.6e-50
Identity = 108/252 (42.86%), Postives = 143/252 (56.75%), Query Frame = 1


Query: 1   MAWFLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 60
           MA+ L  L  LL S +TACDRC+H SKA+++      S G+ CGYG    + S G  AA 
Sbjct: 1   MAFLLLFLLSLLASSATACDRCLHQSKASYFSKASVLSSGA-CGYGSQALDFSGGNLAAG 60

Query: 61  VPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDFVL------------- 120
           V SL+K+GA CG C+Q+RC N ++C  +GT VV+TD++ NN TDFVL             
Sbjct: 61  VASLFKDGAGCGGCFQIRCKNPSVCSKLGTTVVLTDLNRNNETDFVLSSRAFSGMAQKGK 120

Query: 121 -------------------------------KWSHKPEVLAIKFLYQGGQTDILAVNITQ 180
                                          + S KP+ LA+KFLYQGGQT+I+ V++ Q
Sbjct: 121 GKEILKLGIVDIEYKRVPCVYKNQNLAVRVEESSKKPDYLAVKFLYQGGQTEIVGVDVAQ 180

Query: 181 VEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDT 209
           V    WS M RN GA+W    V +GAL+ + +V +GY+ KWI  K  +PADWKNG IYD+
Sbjct: 181 VGSANWSFMSRNHGAVWDTSRVPKGALQFRFVVTAGYDGKWIWAKKVLPADWKNGVIYDS 240

[Close]

BLAST of Lsi06G006150 vs. TAIR10
Match: AT3G45960.2 (AT3G45960.2 expansin-like A3)

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-39
Identity = 90/257 (35.02%), Postives = 129/257 (50.19%), Query Frame = 1


Query: 4   FLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVPS 63
           +L ++ FL  S   ACDRC+H SKA+++      S G+ C YG +      G+ AA +PS
Sbjct: 6   YLIVVIFLFSSSVNACDRCLHRSKASYFSSASALSSGA-CAYGPMATSFFAGHIAAAIPS 65

Query: 64  LYKEGASCGACYQVRC---------------------------MNKTICKSIGTKVV--- 123
           +YK+GA CGAC+QVRC                           ++    +++   VV   
Sbjct: 66  IYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVD 125

Query: 124 -------VTDIHYN---------NGTDFVLKWSHKPEVLAIKFLYQGGQTDILAVNITQV 183
                  + D+ Y          N    V + S KP  LAIK LYQGGQT+++ ++I  V
Sbjct: 126 KYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPV 185

Query: 184 EFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDTG 215
              +WS M R+ GA+W    V  GAL+ K  V  GY+ K + +K  +PA+W +G IYD G
Sbjct: 186 GSSQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAG 245

[Close]

BLAST of Lsi06G006150 vs. TAIR10
Match: AT3G45970.1 (AT3G45970.1 expansin-like A1)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-26
Identity = 81/262 (30.92%), Postives = 115/262 (43.89%), Query Frame = 1


Query: 4   FLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVPS 63
           FL ++ FL  S   ACDRC+H SKA ++      S G+ C YG +      G+ AA +PS
Sbjct: 6   FLIVVIFLFSSSVNACDRCLHRSKAAYFSSASALSSGA-CAYGSMATSFFAGHIAAAIPS 65

Query: 64  --------------LYKEGASCG---------------------ACYQVRCMNKTICKSI 123
                           K    C                      +    R M K I  + 
Sbjct: 66  IYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGAD 125

Query: 124 GT--KVVVTDIHYN---------NGTDFVLKWSHKPEVLAIKFLYQGGQTDILAVNITQV 183
               K  + DI Y          N    V + S KP  L IK LYQGGQT++++++I QV
Sbjct: 126 KDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQV 185

Query: 184 -EFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDT 219
                W  M R+ GA+W    V  GA++ + +V  GY+ K I ++  +P++W+ G IYD 
Sbjct: 186 GSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDA 245

[Close]

BLAST of Lsi06G006150 vs. TAIR10
Match: AT4G38400.1 (AT4G38400.1 expansin-like A2)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-25
Identity = 78/251 (31.08%), Postives = 111/251 (44.22%), Query Frame = 1


Query: 4   FLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVP- 63
           FL  +  L  S + ACDRC+H SKA ++      S G+ C YG +      G+ AA +P 
Sbjct: 7   FLLSVVLLFSSSAAACDRCLHSSKAAYFSSASALSSGA-CAYGSMATGFFAGHIAAALPS 66

Query: 64  -------------SLYKEGASCGA---------------------CYQVRCMNKTICKSI 123
                           K    C +                         R M K +  + 
Sbjct: 67  IYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGAD 126

Query: 124 GT--KVVVTDIHYNN-GTDF--------VLKWSHKPEVLAIKFLYQGGQTDILAVNITQV 183
               K  + DI Y     D+        V + S  P  LAIK LYQGGQT+++A+ I QV
Sbjct: 127 RDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQV 186

Query: 184 EFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDTG 209
               WS M R+ GA+W    V  GAL+ + +V +GY+ K + ++  +PA+W+ G  YD G
Sbjct: 187 GSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAG 246

[Close]

BLAST of Lsi06G006150 vs. TAIR10
Match: AT4G17030.1 (AT4G17030.1 expansin-like B1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 110 SHKPEVLAIKFLYQGGQTDILAVNITQVEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMV 169
           S+ P  LAI  LY GG  DILAV + Q + KEW  M R FGA+  + N   G L ++ +V
Sbjct: 159 SYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLV 218

Query: 170 ISGYNNKWISTKYAIPADWKNGNIYDTGI 199
                  WI +  AIPADW  G  YD+ I
Sbjct: 219 YGSAGINWIQSPNAIPADWTAGATYDSNI 247

[Close]

BLAST of Lsi06G006150 vs. TAIR10
Match: AT2G20750.1 (AT2G20750.1 expansin B1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 38  SYGSTCGYGKL-EFEISKGYFAAVVPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTD 97
           S G  CGYG L + +  K    AV P L+K G  CGACY+VRC++KTIC      ++ TD
Sbjct: 56  SSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATD 115

[Close]

BLAST of Lsi06G006150 vs. NCBI nr
Match: gi|700188070|gb|KGN43303.1| (hypothetical protein Csa_7G019830 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 2.3e-63
Identity = 117/224 (52.23%), Postives = 153/224 (68.30%), Query Frame = 1


Query: 1   MAWFLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 60
           MAWFL L FF LVS++ ACDRC+H SKATHY+ D P SYG  CGYG +  E + GYF+A 
Sbjct: 1   MAWFLSLFFFFLVSFTNACDRCIHRSKATHYYGDSPTSYGGACGYGDMALEFTNGYFSAA 60

Query: 61  VPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDFVLKWSHKP-EVLAIK 120
           VPSLYK+GA CGAC+QVRC +K +C + G+KVV+TD +Y++  DFVL  S K    +A+K
Sbjct: 61  VPSLYKQGAGCGACFQVRCKDKRLCNTAGSKVVLTDQNYDSRADFVL--SRKAFSAMALK 120

Query: 121 ----FLYQGGQTDILAVNITQVEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNN 180
                L   G  D+    IT+V   EW  + RN+GA+W    V +GAL+M+M   SGY+ 
Sbjct: 121 GKGQELLNTGIVDVEYKRITRVGSYEWVSLRRNYGAVWDTSKVPKGALQMRMAFTSGYDG 180

Query: 181 KWISTKYAIPADWKNGNIYDTGIQIKDITMENCPSNKCGVKSWK 220
           KW+  +Y +P DWK G IYDTG+QI DI  E+CP+++CG K WK
Sbjct: 181 KWVWAEYVLPVDWKVGAIYDTGVQIYDIAKESCPTSQCGDKPWK 222

[Close]

BLAST of Lsi06G006150 vs. NCBI nr
Match: gi|778730065|ref|XP_004144934.2| (PREDICTED: expansin-like A2 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 6.8e-60
Identity = 119/263 (45.25%), Postives = 156/263 (59.32%), Query Frame = 1


Query: 1   MAWFLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 60
           MAWFL  LF   +S + ACDRCV  SKA+H  Y+ P +YG  CGYG L  + S G+FAA 
Sbjct: 3   MAWFLSFLFLFFISSAHACDRCVFQSKASHL-YESPTTYGGACGYGNLALQFSNGFFAAA 62

Query: 61  VPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTD---------------- 120
           VPSLYK+GA CGACYQVRC N+ +C ++GTKVV+TD + +N TD                
Sbjct: 63  VPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGK 122

Query: 121 ----------------------------FVLKWSHKPEVLAIKFLYQGGQTDILAVNITQ 180
                                        V + S+ P  LAIK+LYQGGQT+++AV+I Q
Sbjct: 123 GSDLLNLGVVDVEYKRVPCEYPNRNLLVRVEESSYNPFKLAIKYLYQGGQTEMVAVDIAQ 182

Query: 181 VEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDT 220
           V   +WS M R++GA+W   NV EGAL+++M+V SGY+   +  K  +PA W+ G IYDT
Sbjct: 183 VGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGNLVWAKSVLPATWRAGGIYDT 242

[Close]

BLAST of Lsi06G006150 vs. NCBI nr
Match: gi|659098745|ref|XP_008450281.1| (PREDICTED: expansin-like A1 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-59
Identity = 136/274 (49.64%), Postives = 156/274 (56.93%), Query Frame = 1


Query: 1   MAWFLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 60
           M WFL L FFLLVSYSTACDRCVH SKATHY YDVPASYGSTCGYGKLEFEISKGYFAAV
Sbjct: 1   MGWFLTLFFFLLVSYSTACDRCVHQSKATHYRYDVPASYGSTCGYGKLEFEISKGYFAAV 60

Query: 61  VPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDFVLKWSHKPEVLAIKF 120
           +PSLYK+GASCGACY+VRC NKT+C  IG+KVVVTDIHYNNGTDFVL  S K    A   
Sbjct: 61  LPSLYKQGASCGACYKVRCKNKTLCNRIGSKVVVTDIHYNNGTDFVL--SKK----AFSS 120

Query: 121 LYQGGQT-DILAVNITQVEFKEWSPMIRNFGAIWYIPNVVEGALKMKMMVIS-------- 180
           +   G+T  +L ++  QVE+K      +N      +  +VE + K +++ I         
Sbjct: 121 MASKGKTQQLLNIDTIQVEYKRIPCEYKNKN---LLVEIVEWSHKPEVLAIKFLYQGGQT 180

Query: 181 ----------GYNNKWISTKYAIPADW--------------------------------- 220
                     G    W        A W                                 
Sbjct: 181 DILAVNITQVGLEKSWRGMIRNFGAIWYIPNVVEGALKLKMMVGSGYNNNKWISTKYAIP 240

[Close]

BLAST of Lsi06G006150 vs. NCBI nr
Match: gi|700188071|gb|KGN43304.1| (hypothetical protein Csa_7G019840 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 6.8e-52
Identity = 113/237 (47.68%), Postives = 143/237 (60.34%), Query Frame = 1


Query: 1   MAWFLGLLFFLLVSYSTA----CDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGY 60
           M WFL +  FLLVS +TA    C+RC+H SKA +Y+ D P SYG  CGYG L  EIS+GY
Sbjct: 1   MYWFL-IFLFLLVSSTTASFPPCNRCLHQSKAAYYYEDSPTSYGGACGYGNLALEISQGY 60

Query: 61  FAAVVPSLYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDFVLKWSHKPEVL 120
           FAA VPSLYK GA CGACYQVRC +  +C + GTK+V+TD + +N TD VL        +
Sbjct: 61  FAAAVPSLYKGGAGCGACYQVRCKDTYLCNTAGTKIVLTDQNNDNRTDIVLS-KKAFSAM 120

Query: 121 AIKFLYQ------------------GGQTDILAVNITQVEFKEWSPMIRNFGAIWYIPNV 180
           A+K   Q                   G T    +N  +V   +W PM RN+G IW I  V
Sbjct: 121 ALKGKAQQLLNTGLVDIEYKRCGLITGSTKNYILNPQKVGLPKWRPMKRNYGGIWDINGV 180

Query: 181 VEGALKMKMMVISGYNN-KWISTKYAIPADWKNGNIYDTGIQIKDITMENCPSNKCG 215
            +G L+++M+V S Y+N KWI     +P+DWKNG IYDTG+QI DI  E CP  +CG
Sbjct: 181 PKGGLQLRMVVTSRYDNGKWIWAGSVLPSDWKNGEIYDTGVQINDIAYEYCPPWQCG 235

[Close]

BLAST of Lsi06G006150 vs. NCBI nr
Match: gi|823161283|ref|XP_012480509.1| (PREDICTED: expansin-like A1 [Gossypium raimondii])

HSP 1 Score: 211.5 bits (537), Expect = 1.5e-51
Identity = 114/259 (44.02%), Postives = 150/259 (57.92%), Query Frame = 1


Query: 4   FLGLLFFLLVSYSTACDRCVHLSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVPS 63
           FL +L FL++S +TACDRCVH SKA+++  D  AS G+ CGYG L   IS G+ AA V S
Sbjct: 6   FLCMLLFLVLSSATACDRCVHQSKASYFS-DAAASSGA-CGYGSLALTISGGHLAAGVSS 65

Query: 64  LYKEGASCGACYQVRCMNKTICKSIGTKVVVTDIHYNNGTDF------------------ 123
           L+K+GA CGAC+Q+RC +  +C S GTKV +TD+++NN TDF                  
Sbjct: 66  LHKQGAGCGACFQIRCKDSKLCSSKGTKVTLTDLNHNNQTDFVLTSRAFMAMANKGKGQD 125

Query: 124 VLKW--------------------------SHKPEVLAIKFLYQGGQTDILAVNITQVEF 183
           VLK                           S KP  LAIK LYQGGQT+I+A+++ QV  
Sbjct: 126 VLKLGIVDVEYKRMPCEYKNQNLAIRVEESSQKPYYLAIKLLYQGGQTEIVAIDVAQVGS 185

Query: 184 KEWSPMIRNFGAIWYIPNVVEGALKMKMMVISGYNNKWISTKYAIPADWKNGNIYDTGIQ 219
             W  M RN+GA+W    V  GAL+ + +V SGY+ KW+  K  +PADWK G IYD+G+Q
Sbjct: 186 SNWIFMTRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWVWAKNVLPADWKIGVIYDSGVQ 245

The following BLAST results are available for this feature:

BLAST of Lsi06G006150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXLA3_ARATH	1.6e-37	35.02	Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1	[more]
EXLA1_ARATH	4.2e-25	30.92	Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1	[more]
EXLA2_ARATH	3.5e-24	31.08	Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1	[more]
EXLA3_ORYSJ	1.8e-23	37.59	Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1	[more]
EXLA1_ORYSJ	4.3e-22	43.24	Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1	[more]

BLAST of Lsi06G006150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1G6_CUCSA	1.6e-63	52.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019830 PE=3 SV=1	[more]
A0A0A0K2Q2_CUCSA	4.8e-52	47.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019840 PE=3 SV=1	[more]
A0A0D2NI99_GOSRA	1.1e-51	44.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G257500 PE=3 SV=1	[more]
B9T775_RICCO	6.9e-51	42.59	Beta-expansin 1a, putative OS=Ricinus communis GN=RCOM_0235100 PE=3 SV=1	[more]
A0A0L9V8X1_PHAAN	2.6e-50	42.86	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g193100 PE=3 SV=1	[more]

BLAST of Lsi06G006150 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45960.2	9.2e-39	35.02	expansin-like A3	[more]
AT3G45970.1	2.4e-26	30.92	expansin-like A1	[more]
AT4G38400.1	2.0e-25	31.08	expansin-like A2	[more]
AT4G17030.1	2.4e-15	43.82	expansin-like B1	[more]
AT2G20750.1	1.5e-09	46.67	expansin B1	[more]

BLAST of Lsi06G006150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188070\|gb\|KGN43303.1\|	2.3e-63	52.23	hypothetical protein Csa_7G019830 [Cucumis sativus]	[more]
gi\|778730065\|ref\|XP_004144934.2\|	6.8e-60	45.25	PREDICTED: expansin-like A2 [Cucumis sativus]	[more]
gi\|659098745\|ref\|XP_008450281.1\|	1.5e-59	49.64	PREDICTED: expansin-like A1 [Cucumis melo]	[more]
gi\|700188071\|gb\|KGN43304.1\|	6.8e-52	47.68	hypothetical protein Csa_7G019840 [Cucumis sativus]	[more]
gi\|823161283\|ref\|XP_012480509.1\|	1.5e-51	44.02	PREDICTED: expansin-like A1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009009	RlpA-like_DPBB
IPR007117	Expansin_CBD
IPR007112	Expansin/allergen_DPBB_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0019953	sexual reproduction
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006150.1	Lsi06G006150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007112	Expansin/pollen allergen, DPBB domain	PROFILE	PS50842	EXPANSIN_EG45	coord: 40..96 score: 15
IPR007117	Expansin, cellulose-binding-like domain	GENE3D	G3DSA:2.60.40.760		coord: 108..200 score: 4.3
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Pollen_allerg_1	coord: 111..185 score: 1.6
IPR007117	Expansin, cellulose-binding-like domain	PROFILE	PS50843	EXPANSIN_CBD	coord: 114..196 score: 1
IPR007117	Expansin, cellulose-binding-like domain	unknown	SSF49590	PHL pollen allergen	coord: 105..195 score: 6.8
IPR009009	RlpA-like protein, double-psi beta-barrel domain	GENE3D	G3DSA:2.40.40.10		coord: 9..107 score: 3.5
IPR009009	RlpA-like protein, double-psi beta-barrel domain	unknown	SSF50685	Barwin-like endoglucanases	coord: 8..109 score: 3.45
None	No IPR available	PANTHER	PTHR31692	FAMILY NOT NAMED	coord: 1..202 score: 1.5
None	No IPR available	PANTHER	PTHR31692:SF4	EXPANSIN-LIKE A1-RELATED	coord: 1..202 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G006150	Csa1G637440	Cucumber (Chinese Long) v2	culsiB077
Lsi06G006150	CSPI01G31510	Wild cucumber (PI 183967)	cpilsiB077
Lsi06G006150	Cucsa.355990	Cucumber (Gy14) v1	cgylsiB574
Lsi06G006150	Cucsa.355810	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006150	Cla007329	Watermelon (97103) v1	lsiwmB397
Lsi06G006150	MELO3C015050	Melon (DHL92) v3.5.1	lsimeB406
Lsi06G006150	ClCG03G012280	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G006150	MELO3C015050.2	Melon (DHL92) v3.6.1	lsimedB428
Lsi06G006150	Cla97C03G062610	Watermelon (97103) v2	lsiwmbB365
Lsi06G006150	Bhi02G001209	Wax gourd	lsiwgoB520
Lsi06G006150	CsGy1G030680	Cucumber (Gy14) v2	cgyblsiB072
Lsi06G006150	CsaV3_1G043880	Cucumber (Chinese Long) v3	cuclsiB087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G006150	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006150	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006150	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006150	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006150	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G006150	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006150	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006150	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G006150	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006150	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G006150	Silver-seed gourd	carlsiB886
Lsi06G006150	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G006150	Wax gourd	lsiwgoB509