Cla007329 (gene) Watermelon (97103) v1

NameCla007329
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionExpansin-like protein (AHRD V1 ***- A1X8W3_SOLTU); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like
LocationChr3 : 19338706 .. 19340339 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTGGCTTATTCCCAGTTTGCTCTTCTTCGTTCTTGTCTCTTATTCCACTGCTTATGATCGTTGCGTTCATCAATCAAAAGCTACTCACTATCATTATGACGTGCCTGCATCATGTGTGAATTTAATCCCTATTTGATTAGAGTTTCTCTTGTTTATTAGTGATAGACTCTAATCACTATCATTAGTTTTGTCATTTAAAATAATTACTCTAATTTTTTTTTAATTTTTTTTTTATGACGGTATGATTAAATACGTGGGTCGGGGAATAGTATAAGCCCTATGTTCATTTTGGCAAAAAAAAAAAAAAATTATGAAAGCTACTTCTTTTTCTTTTTCTTTTTCCTTATTTTTTTCGGCTTGCGCAATTTAACTTTATTTTTTAAGAACATTATTATTAAAAGTGGATAAGCAAACATAGAAACTTATTTGAAGAAGTAATGTTTATAAGCTTAATTTTCTAAAATTAAATCATGATAGGATGGAACTAATGTTTTGTTGTTGTAATTTAATTTTAAAATTTTGGATTATTCTATTAAAAATGGGAGATTCTTGGATTAGAAAAAAAGAGAATTTTTTATGATGTAGAAAAGGAAGTTAATATCAATTTTGTTTGATGATATAAAGATGGATCAACATGTGGATATGGAAAATTAGAGTTTGAAATTTCCAAAGGATACTTTGCAGCTGTTGTGGCTTCCCTTTATAAAAAAGGAGCTTCTTGTGGTGCTTGCTATCAAGTAATTAATTTATATATATTTTTAATTTGTTTTCTCCCATCCCTTTTAAAAGTTAATGATAAATTCATTGGTAATTATGTAGGTAAGATGTAAGAACAAGACAATATGCAATCCAATAGGGACTAAAGTAGTTGTGACAGATATACATTACAATAATGGAACTGATTTTGTTCTAAGTAGAAAAGCTTTCTCCACTATGGCTTTGAGGGGCAAGACTCAACAACTTTTGAATATTGATAGCATCCCCGTGGAATACAAGAGGTAAATCATACTTTTCCATAACTACTTAAAATCAACTTTTAACACTCTTACTCTTGTTTGGTAACAACTTCGGGTCTATTTGATAACTATTTGATTTTTGGTTTTTTAGTTTTTGAAAATTAAGCATATATGATCATGAGCCTTAAATTCCTTGCTTTGTTATCTACCTTTTACCATTGTTCTTAAAAAACTAAGCCAAATTTTGAAAACTAAAACAAATTAATTTTTTCAATAAAAATTGCTTTTGTTTTTAGAAATTGGCTAAAAATTCAACCACTGTATTTAAAAAAAGATGCAAATGATTGTAAAAAACTAAGAGAAAATAGACTTAGTTTTCAAAAAAATAAAACAAAATAGTTATCAAAGGGACTTTTATTTTTAGTTTTCTTTTTTAAAAATTTATGCTTGTTGATTATGAATTTCTTTTTTAAATTATAATTTCCCTTTTATTAAGAAAATACTTTGAATTTCTCGTTAAATTCTAGAAATACCATGTTTTTAATTTTGAAAAATATTTTCTTTTGGTTTTAAAAAAAAAAATTGGTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTAAATTTTAGTTGAGAGTGGATGATAGAATAAACACAACTTATGGATGGAACTAG

mRNA sequence

ATGGCTTCTTGGCTTATTCCCAGTTTGCTCTTCTTCGTTCTTGTCTCTTATTCCACTGCTTATGATCGTTGCGTTCATCAATCAAAAGCTACTCACTATCATTATGACGTGCCTGCATCATATGGATCAACATGTGGATATGGAAAATTAGAGTTTGAAATTTCCAAAGGATACTTTGCAGCTGTTGTGGCTTCCCTTTATAAAAAAGGAGCTTCTTGTGGTGCTTGCTATCAATTGAGAGTGGATGATAGAATAAACACAACTTATGGATGGAACTAG

Coding sequence (CDS)

ATGGCTTCTTGGCTTATTCCCAGTTTGCTCTTCTTCGTTCTTGTCTCTTATTCCACTGCTTATGATCGTTGCGTTCATCAATCAAAAGCTACTCACTATCATTATGACGTGCCTGCATCATATGGATCAACATGTGGATATGGAAAATTAGAGTTTGAAATTTCCAAAGGATACTTTGCAGCTGTTGTGGCTTCCCTTTATAAAAAAGGAGCTTCTTGTGGTGCTTGCTATCAATTGAGAGTGGATGATAGAATAAACACAACTTATGGATGGAACTAG

Protein sequence

MASWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVASLYKKGASCGACYQLRVDDRINTTYGWN
BLAST of Cla007329 vs. Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-10
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 1

Query: 1  MASWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFA 60
          M S+L   ++ F+  S   A DRC+H+SKA ++      S G+ C YG +      G+ A
Sbjct: 1  MGSFLFLIVVIFLFSSSVNACDRCLHRSKAAYFSSASALSSGA-CAYGSMATSFFAGHIA 60

Query: 61 AVVASLYKKGASCGACYQLR 81
          A + S+YK GA CGAC+Q+R
Sbjct: 61 AAIPSIYKDGAGCGACFQVR 79

BLAST of Cla007329 vs. Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-10
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 1

Query: 1  MASWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFA 60
          M S+L   ++ F+  S   A DRC+H+SKA+++      S G+ C YG +      G+ A
Sbjct: 1  MRSFLYLIVVIFLFSSSVNACDRCLHRSKASYFSSASALSSGA-CAYGPMATSFFAGHIA 60

Query: 61 AVVASLYKKGASCGACYQLR 81
          A + S+YK GA CGAC+Q+R
Sbjct: 61 AAIPSIYKDGAGCGACFQVR 79

BLAST of Cla007329 vs. Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.7e-08
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 1

Query: 9  LLFFVLV--SYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVASL 68
          LL  VL+  S + A DRC+H SKA ++      S G+ C YG +      G+ AA + S+
Sbjct: 8  LLSVVLLFSSSAAACDRCLHSSKAAYFSSASALSSGA-CAYGSMATGFFAGHIAAALPSI 67

Query: 69 YKKGASCGACYQLR 81
          YK G+ CGAC+Q+R
Sbjct: 68 YKDGSGCGACFQVR 80

BLAST of Cla007329 vs. Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 1

Query: 22 DRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYF-AAVVASLYKKGASCGACYQLR 81
          DRCV +S+A +Y   +  + GS CGYG      + G F AA   +LY+ G  CGACYQ+R
Sbjct: 37 DRCVRRSRAAYYTSSLTLTAGS-CGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVR 96

Query: 82 VDDR 85
            D+
Sbjct: 97 CKDK 99

BLAST of Cla007329 vs. TrEMBL
Match: A0A0A0K1G6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019830 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-21
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1

Query: 3  SWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 62
          +W + SL FF LVS++ A DRC+H+SKATHY+ D P SYG  CGYG +  E + GYF+A 
Sbjct: 2  AWFL-SLFFFFLVSFTNACDRCIHRSKATHYYGDSPTSYGGACGYGDMALEFTNGYFSAA 61

Query: 63 VASLYKKGASCGACYQLRVDDR 85
          V SLYK+GA CGAC+Q+R  D+
Sbjct: 62 VPSLYKQGAGCGACFQVRCKDK 82

BLAST of Cla007329 vs. TrEMBL
Match: A0A0A0K2Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019840 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.2e-18
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1

Query: 9  LLFFVLVSYSTAY----DRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVA 68
          +  F+LVS +TA     +RC+HQSKA +Y+ D P SYG  CGYG L  EIS+GYFAA V 
Sbjct: 6  IFLFLLVSSTTASFPPCNRCLHQSKAAYYYEDSPTSYGGACGYGNLALEISQGYFAAAVP 65

Query: 69 SLYKKGASCGACYQLRVDD 84
          SLYK GA CGACYQ+R  D
Sbjct: 66 SLYKGGAGCGACYQVRCKD 84

BLAST of Cla007329 vs. TrEMBL
Match: A0A0A0K0R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019850 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-16
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1

Query: 3  SWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 62
          +W + S LF   +S + A DRCV QSKA+H  Y+ P +YG  CGYG L  + S G+FAA 
Sbjct: 2  AWFL-SFLFLFFISSAHACDRCVFQSKASHL-YESPTTYGGACGYGNLALQFSNGFFAAA 61

Query: 63 VASLYKKGASCGACYQLRVDDR 85
          V SLYK+GA CGACYQ+R  +R
Sbjct: 62 VPSLYKQGAGCGACYQVRCKNR 81

BLAST of Cla007329 vs. TrEMBL
Match: A0A0A0K4T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019330 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-16
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 8  SLLFFVLVSYSTAY--DRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVVAS 67
          +LLFF++ S S A   +RCVHQSKA +Y+ D P  YG+ CGYG L FE+S GY A VV S
Sbjct: 6  ALLFFLVSSASAAATCNRCVHQSKAAYYYDDTPIPYGA-CGYGALAFELSNGYAAGVVPS 65

Query: 68 LYKKGASCGACYQLRVDDR 85
          LYK+GA CG+C+Q+R  DR
Sbjct: 66 LYKQGAGCGSCFQVRCKDR 83

BLAST of Cla007329 vs. TrEMBL
Match: A0A0A0K2Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019890 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-15
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 1

Query: 3  SWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 62
          +W +   +F   +S + A DRCV+QSKA+H  YD P +YG  CGYG +  + S G+FAA 
Sbjct: 2  TWFL-GFVFLYFISSANACDRCVYQSKASHL-YDSPTTYGGACGYGNVALQFSNGFFAAA 61

Query: 63 VASLYKKGASCGACYQLRVDDR 85
          V SLY++G  CGACYQ+R  +R
Sbjct: 62 VPSLYRQGVGCGACYQVRCKNR 81

BLAST of Cla007329 vs. NCBI nr
Match: gi|659098745|ref|XP_008450281.1| (PREDICTED: expansin-like A1 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 5.3e-30
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1

Query: 4  WLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAVV 63
          W + +L FF+LVSYSTA DRCVHQSKATHY YDVPASYGSTCGYGKLEFEISKGYFAAV+
Sbjct: 3  WFL-TLFFFLLVSYSTACDRCVHQSKATHYRYDVPASYGSTCGYGKLEFEISKGYFAAVL 62

Query: 64 ASLYKKGASCGACYQLRVDDR 85
           SLYK+GASCGACY++R  ++
Sbjct: 63 PSLYKQGASCGACYKVRCKNK 82

BLAST of Cla007329 vs. NCBI nr
Match: gi|659094104|ref|XP_008447886.1| (PREDICTED: expansin-like A1 isoform X1 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1

Query: 3  SWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 62
          +W + SL FF LVS++ A DRC+H+SKATHY+ D P SYG  CGYG L  + S G+FAA 
Sbjct: 2  AWFL-SLFFFFLVSFANACDRCIHRSKATHYYGDSPTSYGGACGYGNLALQFSNGFFAAA 61

Query: 63 VASLYKKGASCGACYQLRVDDR 85
          V SLYK+GA CGACYQ+R  +R
Sbjct: 62 VPSLYKQGAGCGACYQVRCKNR 82

BLAST of Cla007329 vs. NCBI nr
Match: gi|659094108|ref|XP_008447888.1| (PREDICTED: expansin-like A3 isoform X3 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-21
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 1

Query: 3  SWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 62
          +W + SL FF LVS++ A DRC+H+SKATHY+ D P SYG  CGYG L  E + GYF+A 
Sbjct: 2  AWFL-SLFFFFLVSFANACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTDGYFSAA 61

Query: 63 VASLYKKGASCGACYQLRVDDR 85
          V SLYK+GA CGAC+Q+R  D+
Sbjct: 62 VPSLYKQGAGCGACFQVRCKDK 82

BLAST of Cla007329 vs. NCBI nr
Match: gi|449454267|ref|XP_004144877.1| (PREDICTED: expansin-like A3 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-21
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1

Query: 3  SWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 62
          +W + SL FF LVS++ A DRC+H+SKATHY+ D P SYG  CGYG +  E + GYF+A 
Sbjct: 2  AWFL-SLFFFFLVSFTNACDRCIHRSKATHYYGDSPTSYGGACGYGDMALEFTNGYFSAA 61

Query: 63 VASLYKKGASCGACYQLRVDDR 85
          V SLYK+GA CGAC+Q+R  D+
Sbjct: 62 VPSLYKQGAGCGACFQVRCKDK 82

BLAST of Cla007329 vs. NCBI nr
Match: gi|700188070|gb|KGN43303.1| (hypothetical protein Csa_7G019830 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-21
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1

Query: 3  SWLIPSLLFFVLVSYSTAYDRCVHQSKATHYHYDVPASYGSTCGYGKLEFEISKGYFAAV 62
          +W + SL FF LVS++ A DRC+H+SKATHY+ D P SYG  CGYG +  E + GYF+A 
Sbjct: 2  AWFL-SLFFFFLVSFTNACDRCIHRSKATHYYGDSPTSYGGACGYGDMALEFTNGYFSAA 61

Query: 63 VASLYKKGASCGACYQLRVDDR 85
          V SLYK+GA CGAC+Q+R  D+
Sbjct: 62 VPSLYKQGAGCGACFQVRCKDK 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EXLA1_ARATH2.7e-1040.00Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1[more]
EXLA3_ARATH4.6e-1040.00Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1[more]
EXLA2_ARATH5.7e-0841.89Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1[more]
EXLA1_ORYSJ1.1e-0643.75Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K1G6_CUCSA3.1e-2157.32Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019830 PE=3 SV=1[more]
A0A0A0K2Q2_CUCSA4.2e-1859.49Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019840 PE=3 SV=1[more]
A0A0A0K0R8_CUCSA1.8e-1653.66Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019850 PE=4 SV=1[more]
A0A0A0K4T8_CUCSA1.8e-1658.23Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019330 PE=3 SV=1[more]
A0A0A0K2Q9_CUCSA1.5e-1548.78Uncharacterized protein OS=Cucumis sativus GN=Csa_7G019890 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659098745|ref|XP_008450281.1|5.3e-3079.01PREDICTED: expansin-like A1 [Cucumis melo][more]
gi|659094104|ref|XP_008447886.1|1.5e-2159.76PREDICTED: expansin-like A1 isoform X1 [Cucumis melo][more]
gi|659094108|ref|XP_008447888.1|3.4e-2158.54PREDICTED: expansin-like A3 isoform X3 [Cucumis melo][more]
gi|449454267|ref|XP_004144877.1|4.5e-2157.32PREDICTED: expansin-like A3 [Cucumis sativus][more]
gi|700188070|gb|KGN43303.1|4.5e-2157.32hypothetical protein Csa_7G019830 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007112Expansin/allergen_DPBB_dom
IPR009009RlpA-like_DPBB
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0019953 sexual reproduction
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007329Cla007329.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 42..92
score: 11
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 10..83
score: 2.6
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 10..86
score: 2.48
NoneNo IPR availablePANTHERPTHR31692FAMILY NOT NAMEDcoord: 5..80
score: 5.3
NoneNo IPR availablePANTHERPTHR31692:SF4EXPANSIN-LIKE A1-RELATEDcoord: 5..80
score: 5.3