Lsi06G005110 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G005110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Histone superfamily protein
Location	chr06 : 6150691 .. 6151101 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAACAAAGCAAACCGCAAGAAAATCGACCGGAGGAAAAGCGCCAAGGAAGCAGCTGGCTACGAAGGCAGCAAGGAAGTCAGCTCCGGCGACCGGAGGAGTGAAGAAGCCTCACAGATTCCGTCCAGGAACGGTGGCGCTGAGGGAGATCAGGAAGTATCAGAAGAGCACGGAGCTTCTAATCAGGAAGCTTCCGTTTCAGAGGCTGGTGAGGGAGATCGCTCAGGATTTCAAGACGGATCTTAGGTTTCAGAGCAGCGCCGTCGCGGCTCTTCAGGAGGCGGCGGAGGCGTATCTGGTAGGATTGTTTGAAGATACAAATCTGTGCGCTATTCATGCTAAGAGAGTTACAATTATGCCTAAGGATATTCAGCTGGCTAGGAGAATTAGAGGAGAGAGGGCTTAA

mRNA sequence

ATGGCCAGAACAAAGCAAACCGCAAGAAAATCGACCGGAGGAAAAGCGCCAAGGAAGCAGCTGGCTACGAAGGCAGCAAGGAAGTCAGCTCCGGCGACCGGAGGAGTGAAGAAGCCTCACAGATTCCGTCCAGGAACGGTGGCGCTGAGGGAGATCAGGAAGTATCAGAAGAGCACGGAGCTTCTAATCAGGAAGCTTCCGTTTCAGAGGCTGGTGAGGGAGATCGCTCAGGATTTCAAGACGGATCTTAGGTTTCAGAGCAGCGCCGTCGCGGCTCTTCAGGAGGCGGCGGAGGCGTATCTGGTAGGATTGTTTGAAGATACAAATCTGTGCGCTATTCATGCTAAGAGAGTTACAATTATGCCTAAGGATATTCAGCTGGCTAGGAGAATTAGAGGAGAGAGGGCTTAA

Coding sequence (CDS)

ATGGCCAGAACAAAGCAAACCGCAAGAAAATCGACCGGAGGAAAAGCGCCAAGGAAGCAGCTGGCTACGAAGGCAGCAAGGAAGTCAGCTCCGGCGACCGGAGGAGTGAAGAAGCCTCACAGATTCCGTCCAGGAACGGTGGCGCTGAGGGAGATCAGGAAGTATCAGAAGAGCACGGAGCTTCTAATCAGGAAGCTTCCGTTTCAGAGGCTGGTGAGGGAGATCGCTCAGGATTTCAAGACGGATCTTAGGTTTCAGAGCAGCGCCGTCGCGGCTCTTCAGGAGGCGGCGGAGGCGTATCTGGTAGGATTGTTTGAAGATACAAATCTGTGCGCTATTCATGCTAAGAGAGTTACAATTATGCCTAAGGATATTCAGCTGGCTAGGAGAATTAGAGGAGAGAGGGCTTAA

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

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BLAST of Lsi06G005110 vs. Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. Swiss-Prot
Match: H32_BRANA (Histone H3.2 OS=Brassica napus PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. TrEMBL
Match: Q71CZ4_OROCE (Histone H3 OS=Orobanche cernua var. cumana PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. TrEMBL
Match: K3YE80_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_012541mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 52  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 111

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 112 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 171

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 172 MPKDIQLARRIRGERA 187

[Close]

BLAST of Lsi06G005110 vs. TrEMBL
Match: A0A096TZU4_MAIZE (Histone H3.2 OS=Zea mays GN=H3C4 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 110 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 169

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 170 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 229

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 230 MPKDIQLARRIRGERA 245

[Close]

BLAST of Lsi06G005110 vs. TrEMBL
Match: K3ZAN5_SETIT (Histone H3 OS=Setaria italica GN=SETIT_007481mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. TrEMBL
Match: M5WKJ0_PRUPE (Histone H3 OS=Prunus persica GN=PRUPE_ppa013165mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. TAIR10
Match: AT1G09200.1 (AT1G09200.1 Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.7e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. TAIR10
Match: AT3G27360.1 (AT3G27360.1 Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.7e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. TAIR10
Match: AT5G10390.1 (AT5G10390.1 Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.7e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. TAIR10
Match: AT5G10400.1 (AT5G10400.1 Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.7e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. TAIR10
Match: AT5G65360.1 (AT5G65360.1 Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.7e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Lsi06G005110 vs. NCBI nr
Match: gi|992271660|gb|KXG31833.1| (hypothetical protein SORBI_003G065000, partial [Sorghum bicolor])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 87  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 146

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 147 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 206

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 207 MPKDIQLARRIRGERA 222

[Close]

BLAST of Lsi06G005110 vs. NCBI nr
Match: gi|629084870|gb|KCW51227.1| (hypothetical protein EUGRSUZ_J00806, partial [Eucalyptus grandis])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 26  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 85

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 86  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 145

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 146 MPKDIQLARRIRGERA 161

[Close]

BLAST of Lsi06G005110 vs. NCBI nr
Match: gi|414878180|tpg|DAA55311.1| (TPA: histone H3.2 [Zea mays])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 110 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 169

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 170 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 229

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 230 MPKDIQLARRIRGERA 245

[Close]

BLAST of Lsi06G005110 vs. NCBI nr
Match: gi|944232983|gb|KQK97345.1| (hypothetical protein SETIT_012204mg, partial [Setaria italica])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 123 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 182

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 183 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 242

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 243 MPKDIQLARRIRGERA 258

[Close]

BLAST of Lsi06G005110 vs. NCBI nr
Match: gi|922560415|ref|XP_013608483.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106315288 [Brassica oleracea var. oleracea])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Lsi06G005110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H32_ARATH	1.4e-66	100.00	Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2	[more]
H32_ASPOF	1.4e-66	100.00	Histone H3.2 OS=Asparagus officinalis PE=2 SV=3	[more]
H32_BRANA	1.4e-66	100.00	Histone H3.2 OS=Brassica napus PE=2 SV=3	[more]
H32_EUPES	1.4e-66	100.00	Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3	[more]
H32_PETCR	1.4e-66	100.00	Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2	[more]

BLAST of Lsi06G005110 vs. TrEMBL


Match Name	E-value	Identity	Description
Q71CZ4_OROCE	1.5e-64	100.00	Histone H3 OS=Orobanche cernua var. cumana PE=2 SV=1	[more]
K3YE80_SETIT	1.5e-64	100.00	Uncharacterized protein OS=Setaria italica GN=SETIT_012541mg PE=3 SV=1	[more]
A0A096TZU4_MAIZE	1.5e-64	100.00	Histone H3.2 OS=Zea mays GN=H3C4 PE=3 SV=1	[more]
K3ZAN5_SETIT	1.5e-64	100.00	Histone H3 OS=Setaria italica GN=SETIT_007481mg PE=3 SV=1	[more]
M5WKJ0_PRUPE	1.5e-64	100.00	Histone H3 OS=Prunus persica GN=PRUPE_ppa013165mg PE=3 SV=1	[more]

BLAST of Lsi06G005110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09200.1	7.7e-68	100.00	Histone superfamily protein	[more]
AT3G27360.1	7.7e-68	100.00	Histone superfamily protein	[more]
AT5G10390.1	7.7e-68	100.00	Histone superfamily protein	[more]
AT5G10400.1	7.7e-68	100.00	Histone superfamily protein	[more]
AT5G65360.1	7.7e-68	100.00	Histone superfamily protein	[more]

BLAST of Lsi06G005110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|992271660\|gb\|KXG31833.1\|	2.2e-64	100.00	hypothetical protein SORBI_003G065000, partial [Sorghum bicolor]	[more]
gi\|629084870\|gb\|KCW51227.1\|	2.2e-64	100.00	hypothetical protein EUGRSUZ_J00806, partial [Eucalyptus grandis]	[more]
gi\|414878180\|tpg\|DAA55311.1\|	2.2e-64	100.00	TPA: histone H3.2 [Zea mays]	[more]
gi\|944232983\|gb\|KQK97345.1\|	2.2e-64	100.00	hypothetical protein SETIT_012204mg, partial [Setaria italica]	[more]
gi\|922560415\|ref\|XP_013608483.1\|	2.2e-64	100.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106315288 [Brassica o...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000164	Histone_H3/CENP-A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
cellular_component	GO:0010369	chromocenter
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G005110.1	Lsi06G005110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 114..135 score: 1.3E-85coord: 98..114 score: 1.3E-85coord: 34..55 score: 1.3E-85coord: 80..98 score: 1.3E-85coord: 3..17 score: 1.3E-85coord: 17..31 score: 1.3E-85coord: 58..75 score: 1.3
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 1..136 score: 1.2E
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 34..136 score: 8.4
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 15..21 scor
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 67..75 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 1..132 score: 8.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..134 score: 5.5
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 2..133 score: 1.14

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G005110	CSPI01G30190	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G005110	CSPI07G19480	Wild cucumber (PI 183967)	cpilsiB545
Lsi06G005110	Cucsa.050110	Cucumber (Gy14) v1	cgylsiB032
Lsi06G005110	Cucsa.143240	Cucumber (Gy14) v1	cgylsiB230
Lsi06G005110	CmaCh20G000660	Cucurbita maxima (Rimu)	cmalsiB527
Lsi06G005110	CmaCh08G005450	Cucurbita maxima (Rimu)	cmalsiB844
Lsi06G005110	CmoCh10G009880	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G005110	CmoCh20G000710	Cucurbita moschata (Rifu)	cmolsiB512
Lsi06G005110	CmoCh02G012700	Cucurbita moschata (Rifu)	cmolsiB571
Lsi06G005110	Cla006287	Watermelon (97103) v1	lsiwmB396
Lsi06G005110	Cla008527	Watermelon (97103) v1	lsiwmB410
Lsi06G005110	MELO3C023528	Melon (DHL92) v3.5.1	lsimeB395
Lsi06G005110	MELO3C014618	Melon (DHL92) v3.5.1	lsimeB415
Lsi06G005110	MELO3C014618.2	Melon (DHL92) v3.6.1	lsimedB439
Lsi06G005110	Cla97C03G063620	Watermelon (97103) v2	lsiwmbB365
Lsi06G005110	Bhi09G000506	Wax gourd	lsiwgoB495
Lsi06G005110	Bhi10G000270	Wax gourd	lsiwgoB487
Lsi06G005110	Cp4.1LG18g01540	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G005110	Cp4.1LG16g08880	Cucurbita pepo (Zucchini)	cpelsiB246
Lsi06G005110	CsGy7G017810	Cucumber (Gy14) v2	cgyblsiB499
Lsi06G005110	Carg16952	Silver-seed gourd	carlsiB424
Lsi06G005110	Carg06919	Silver-seed gourd	carlsiB477
Lsi06G005110	Carg02732	Silver-seed gourd	carlsiB843
Lsi06G005110	CsaV3_7G031310	Cucumber (Chinese Long) v3	cuclsiB566
Lsi06G005110	CsaV3_1G042610	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi06G005110	Lsi10G010400	Bottle gourd (USVL1VR-Ls)	lsilsiB046
Lsi06G005110	Lsi02G025970	Bottle gourd (USVL1VR-Ls)	lsilsiB116

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G005110	Wax gourd	lsiwgoB505
Lsi06G005110	Wax gourd	lsiwgoB520
Lsi06G005110	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G005110	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G005110	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G005110	Cucurbita pepo (Zucchini)	cpelsiB563
Lsi06G005110	Cucumber (Chinese Long) v2	culsiB058
Lsi06G005110	Cucumber (Chinese Long) v2	culsiB530
Lsi06G005110	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G005110	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G005110	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G005110	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G005110	Silver-seed gourd	carlsiB155