Lsi06G000680 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	F-box protein PP2-B1
Location	chr06 : 598200 .. 598960 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATAATAGCTCAATGTATATATTATTTTATAACTAATCATATCACATTATATATTTTAGTAGTGAACAATCTTTTCAATTTGTTTTCTATTCTTAAAATGGCTTTTATTTGAAGTTTTAATATAATGTTGTTAAAAAGAAACAACAATTTACCTTTTTTTTTTTTTTGGGAATTCAGTCCAAGATTTTTTTTTAAAAAAATAGTATATCTTTGATGCTCCATTTTTTTTCAAATATAGAAAATTTTTACCGTTTATAAACGATAGACTGTGATAGAATTCTATCACTTGAGTGATAGACAGTGAAATTTTTTTATATGTAAATAGTTTGATATTTTTTTTGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAATCAACACCAAATTGCTTTCCTCAAAAACACTTTACTTTGCATATCTCTTGGTGAAGTTTGCAGACAGAGCTTATGGATTAAACACTCACCCATCTCAAGCCACAGTACAACTTAACACTGTGACGTCTAAAAAAAAAGTGTATTTGCACAAGGAAAAAGGCTACAAGAATCATGTTATCATTAATGGAGATGATGAAGATGATGGGAGTTGGGTCGAGATCGAGTTGGGGGAGTTTTACGTTAATGATTCCGGGGACGGCGTCGTAGAGATGTGCTTGAAAGAAATTGAGAGCCAACATTTGAGAGGTGGTCTTGTTGTTGAGGGAATTCAACTTAAACCTAAATTGAAACTATAA

mRNA sequence

ATGAACAGAGCTTATGGATTAAACACTCACCCATCTCAAGCCACAGTACAACTTAACACTGTGACGTCTAAAAAAAAAGTGTATTTGCACAAGGAAAAAGGCTACAAGAATCATGTTATCATTAATGGAGATGATGAAGATGATGGGAGTTGGGTCGAGATCGAGTTGGGGGAGTTTTACGTTAATGATTCCGGGGACGGCGTCGTAGAGATGTGCTTGAAAGAAATTGAGAGCCAACATTTGAGAGGTGGTCTTGTTGTTGAGGGAATTCAACTTAAACCTAAATTGAAACTATAA

Coding sequence (CDS)

ATGAACAGAGCTTATGGATTAAACACTCACCCATCTCAAGCCACAGTACAACTTAACACTGTGACGTCTAAAAAAAAAGTGTATTTGCACAAGGAAAAAGGCTACAAGAATCATGTTATCATTAATGGAGATGATGAAGATGATGGGAGTTGGGTCGAGATCGAGTTGGGGGAGTTTTACGTTAATGATTCCGGGGACGGCGTCGTAGAGATGTGCTTGAAAGAAATTGAGAGCCAACATTTGAGAGGTGGTCTTGTTGTTGAGGGAATTCAACTTAAACCTAAATTGAAACTATAA

Protein sequence

MNRAYGLNTHPSQATVQLNTVTSKKKVYLHKEKGYKNHVIINGDDEDDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKLKL

Homology

[Close]

BLAST of Lsi06G000680 vs. Swiss-Prot
Match: P2B13_ARATH (F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 37/118 (31.36%), Postives = 58/118 (49.15%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQL-NTVTSKKKVYL-----------------HKEKGYKNHVIING 61
           N AYGL+  P++ +V+  N   +K   YL                  +E+       + G
Sbjct: 164 NGAYGLDLVPAETSVKSKNGQNNKNTTYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGG 223

Query: 62  DDE-------DDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKP 95
           D +       DDG W+EIELGEF   +  D  V M L E++   L+GG+V++GI+++P
Sbjct: 224 DGKRREPKARDDG-WLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280

[Close]

BLAST of Lsi06G000680 vs. Swiss-Prot
Match: VBF_ARATH (F-box protein VBF OS=Arabidopsis thaliana GN=VBF PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-06
Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = 1


Query: 4   AYGLNTHPSQATVQL-NTVTSKKKVYL-----------------HKEKGYKNHVIINGDD 63
           AYGL+  P++ +++  N   SK   YL                  +E+       + GD 
Sbjct: 166 AYGLDLVPAETSIKSKNGQISKSATYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGGDG 225

Query: 64  E-------DDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPK 96
           +       DDG W+EIELGEF   +  D  V M L E++   L+GG++++GI+++PK
Sbjct: 226 KRREPKCRDDG-WMEIELGEFETREGEDDEVNMTLTEVKGYQLKGGILIDGIEVRPK 281

[Close]

BLAST of Lsi06G000680 vs. Swiss-Prot
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 5.6e-06
Identity = 35/119 (29.41%), Postives = 59/119 (49.58%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQLNTVTSK-KKVYL----------------HKEKGYKNHVIINGD 61
           +RAYGL+  P++ ++++     K K  YL                 +E+    H ++   
Sbjct: 163 SRAYGLDLVPAETSIKVGNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSH 222

Query: 62  DED----DGSWVEIELGEFYVNDSGDG----VVEMCLKEIESQHLRGGLVVEGIQLKPK 96
             +    D  W+EIELGEF    SG+G     V M L E++   L+GG+ ++GI+++PK
Sbjct: 223 RREPEVRDDGWMEIELGEFETG-SGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

[Close]

BLAST of Lsi06G000680 vs. TrEMBL
Match: A0A0A0M1G3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568500 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.2e-36
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQLNT-VTSKKKVYLHKEKGYKNHVIINGD-----DED-DGSWVEI 61
           +RAYGLNTHPSQAT+QLNT VTSK+KVYLHK++ YKN +I  GD     DED D SW+EI
Sbjct: 95  DRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSWIEI 154

Query: 62  ELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKLKL 99
           ELGEFYV+DSGD +VEMCLKE+ESQHLRGGLVVEGIQL+PKLKL
Sbjct: 155 ELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 198

[Close]

BLAST of Lsi06G000680 vs. TrEMBL
Match: I3T595_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-14
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQLNTVTSKKKVYLHKEKGYKNHVIINGDDEDDGSWVEIELGEFYV 61
           +RAYGL++ PS+  V++    SK  VY+ K K    H   +  DED+  W+EIELG FY 
Sbjct: 165 DRAYGLDSLPSEVWVEVGNRKSKGTVYIRKGKA-SCHCQSSEHDEDE--WLEIELGSFYT 224

Query: 62  NDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKL 97
           N S D  V MCLKEI+  HL+GGL+V+GI+++PKL
Sbjct: 225 N-SDDEEVRMCLKEIKGVHLKGGLIVDGIEIRPKL 255

[Close]

BLAST of Lsi06G000680 vs. TrEMBL
Match: M1CB51_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024770 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 3   RAYGLNTHPSQATVQLNTVTSKKKVYLHK-----------------------EKGYKNHV 62
           RA+GL++ PS+ +V++    SK  VYL +                       ++G + HV
Sbjct: 173 RAFGLDSLPSEVSVKVGDHESKGIVYLRRNNGKQELEMVIMRHRVETLRSRVDRGGQEHV 232

Query: 63  IINGDDEDDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKL 97
           +   DD     W+EIELGEFY +   D  V MCL+EI+ +HL+GGL+VEGI+L+PKL
Sbjct: 233 LCERDD----GWLEIELGEFYCDGVNDKQVTMCLREIKGEHLKGGLIVEGIELRPKL 285

[Close]

BLAST of Lsi06G000680 vs. TrEMBL
Match: M1CB49_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024770 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 3   RAYGLNTHPSQATVQLNTVTSKKKVYLHK-----------------------EKGYKNHV 62
           RA+GL++ PS+ +V++    SK  VYL +                       ++G + HV
Sbjct: 33  RAFGLDSLPSEVSVKVGDHESKGIVYLRRNNGKQELEMVIMRHRVETLRSRVDRGGQEHV 92

Query: 63  IINGDDEDDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKL 97
           +   DD     W+EIELGEFY +   D  V MCL+EI+ +HL+GGL+VEGI+L+PKL
Sbjct: 93  LCERDD----GWLEIELGEFYCDGVNDKQVTMCLREIKGEHLKGGLIVEGIELRPKL 145

[Close]

BLAST of Lsi06G000680 vs. TrEMBL
Match: M1CB50_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024770 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 3   RAYGLNTHPSQATVQLNTVTSKKKVYLHK-----------------------EKGYKNHV 62
           RA+GL++ PS+ +V++    SK  VYL +                       ++G + HV
Sbjct: 69  RAFGLDSLPSEVSVKVGDHESKGIVYLRRNNGKQELEMVIMRHRVETLRSRVDRGGQEHV 128

Query: 63  IINGDDEDDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKL 97
           +   DD     W+EIELGEFY +   D  V MCL+EI+ +HL+GGL+VEGI+L+PKL
Sbjct: 129 LCERDD----GWLEIELGEFYCDGVNDKQVTMCLREIKGEHLKGGLIVEGIELRPKL 181

[Close]

BLAST of Lsi06G000680 vs. TAIR10
Match: AT1G56240.1 (AT1G56240.1 phloem protein 2-B13)

HSP 1 Score: 53.5 bits (127), Expect = 8.4e-08
Identity = 37/118 (31.36%), Postives = 58/118 (49.15%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQL-NTVTSKKKVYL-----------------HKEKGYKNHVIING 61
           N AYGL+  P++ +V+  N   +K   YL                  +E+       + G
Sbjct: 164 NGAYGLDLVPAETSVKSKNGQNNKNTTYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGG 223

Query: 62  DDE-------DDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKP 95
           D +       DDG W+EIELGEF   +  D  V M L E++   L+GG+V++GI+++P
Sbjct: 224 DGKRREPKARDDG-WLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280

[Close]

BLAST of Lsi06G000680 vs. TAIR10
Match: AT1G56250.1 (AT1G56250.1 phloem protein 2-B14)

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = 1


Query: 4   AYGLNTHPSQATVQL-NTVTSKKKVYL-----------------HKEKGYKNHVIINGDD 63
           AYGL+  P++ +++  N   SK   YL                  +E+       + GD 
Sbjct: 166 AYGLDLVPAETSIKSKNGQISKSATYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGGDG 225

Query: 64  E-------DDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPK 96
           +       DDG W+EIELGEF   +  D  V M L E++   L+GG++++GI+++PK
Sbjct: 226 KRREPKCRDDG-WMEIELGEFETREGEDDEVNMTLTEVKGYQLKGGILIDGIEVRPK 281

[Close]

BLAST of Lsi06G000680 vs. TAIR10
Match: AT1G09155.1 (AT1G09155.1 phloem protein 2-B15)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 35/119 (29.41%), Postives = 59/119 (49.58%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQLNTVTSK-KKVYL----------------HKEKGYKNHVIINGD 61
           +RAYGL+  P++ ++++     K K  YL                 +E+    H ++   
Sbjct: 163 SRAYGLDLVPAETSIKVGNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSH 222

Query: 62  DED----DGSWVEIELGEFYVNDSGDG----VVEMCLKEIESQHLRGGLVVEGIQLKPK 96
             +    D  W+EIELGEF    SG+G     V M L E++   L+GG+ ++GI+++PK
Sbjct: 223 RREPEVRDDGWMEIELGEFETG-SGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

[Close]

BLAST of Lsi06G000680 vs. NCBI nr
Match: gi|449435605|ref|XP_004135585.1| (PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 8.9e-36
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQLNT-VTSKKKVYLHKEKGYKNHVIINGD-----DED-DGSWVEI 61
           +RAYGLNTHPSQAT+QLNT VTSK+KVYLHK++ YKN +I  GD     DED D SW+EI
Sbjct: 167 DRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSWIEI 226

Query: 62  ELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKLKL 99
           ELGEFYV+DSGD +VEMCLKE+ESQHLRGGLVVEGIQL+PKLKL
Sbjct: 227 ELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 270

[Close]

BLAST of Lsi06G000680 vs. NCBI nr
Match: gi|700210925|gb|KGN66021.1| (hypothetical protein Csa_1G568500 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 8.9e-36
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQLNT-VTSKKKVYLHKEKGYKNHVIINGD-----DED-DGSWVEI 61
           +RAYGLNTHPSQAT+QLNT VTSK+KVYLHK++ YKN +I  GD     DED D SW+EI
Sbjct: 95  DRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSWIEI 154

Query: 62  ELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKLKL 99
           ELGEFYV+DSGD +VEMCLKE+ESQHLRGGLVVEGIQL+PKLKL
Sbjct: 155 ELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 198

[Close]

BLAST of Lsi06G000680 vs. NCBI nr
Match: gi|659099369|ref|XP_008450565.1| (PREDICTED: putative F-box protein PP2-B12 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 5.8e-35
Identity = 79/99 (79.80%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATV-QLNTVTSKKKVYLHKEKGYKNHVIING-DDEDDGSWVEIELGEF 61
           +RAYGLNTHPSQAT+ QLNTVTSK+KVYLHK+KGYKN     G +++DD SW+EIELGEF
Sbjct: 167 DRAYGLNTHPSQATIIQLNTVTSKRKVYLHKQKGYKNQNNFGGVEEDDDDSWIEIELGEF 226

Query: 62  YVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKLKL 99
           YV DS D VVEMCLKEIESQHLRGGLVVEGIQL+PKLKL
Sbjct: 227 YVYDSVDNVVEMCLKEIESQHLRGGLVVEGIQLRPKLKL 265

[Close]

BLAST of Lsi06G000680 vs. NCBI nr
Match: gi|388519251|gb|AFK47687.1| (unknown [Lotus japonicus])

HSP 1 Score: 84.7 bits (208), Expect = 9.6e-14
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 2   NRAYGLNTHPSQATVQLNTVTSKKKVYLHKEKGYKNHVIINGDDEDDGSWVEIELGEFYV 61
           +RAYGL++ PS+  V++    SK  VY+ K K    H   +  DED+  W+EIELG FY 
Sbjct: 165 DRAYGLDSLPSEVWVEVGNRKSKGTVYIRKGKA-SCHCQSSEHDEDE--WLEIELGSFYT 224

Query: 62  NDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKL 97
           N S D  V MCLKEI+  HL+GGL+V+GI+++PKL
Sbjct: 225 N-SDDEEVRMCLKEIKGVHLKGGLIVDGIEIRPKL 255

[Close]

BLAST of Lsi06G000680 vs. NCBI nr
Match: gi|565355660|ref|XP_006344701.1| (PREDICTED: F-box protein PP2-B15-like [Solanum tuberosum])

HSP 1 Score: 82.0 bits (201), Expect = 6.2e-13
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 3   RAYGLNTHPSQATVQLNTVTSKKKVYLHK-----------------------EKGYKNHV 62
           RA+GL++ PS+ +V++    SK  VYL +                       ++G + HV
Sbjct: 174 RAFGLDSLPSEVSVKVGDHESKGIVYLRRNNGKQELEMVIMRHRVETLRSRVDRGGQEHV 233

Query: 63  IINGDDEDDGSWVEIELGEFYVNDSGDGVVEMCLKEIESQHLRGGLVVEGIQLKPKL 97
           +   DD     W+EIELGEFY +   D  V MCL+EI+ +HL+GGL+VEGI+L+PKL
Sbjct: 234 LCERDD----GWLEIELGEFYCDGVNDKQVTMCLREIKGEHLKGGLIVEGIELRPKL 286

The following BLAST results are available for this feature:

BLAST of Lsi06G000680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
P2B13_ARATH	1.5e-06	31.36	F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1	[more]
VBF_ARATH	2.5e-06	30.77	F-box protein VBF OS=Arabidopsis thaliana GN=VBF PE=1 SV=1	[more]
P2B15_ARATH	5.6e-06	29.41	F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2	[more]

BLAST of Lsi06G000680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1G3_CUCSA	6.2e-36	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568500 PE=4 SV=1	[more]
I3T595_LOTJA	6.7e-14	49.47	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
M1CB51_SOLTU	4.3e-13	39.32	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024770 PE=4 SV=1	[more]
M1CB49_SOLTU	4.3e-13	39.32	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024770 PE=4 SV=1	[more]
M1CB50_SOLTU	4.3e-13	39.32	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024770 PE=4 SV=1	[more]

BLAST of Lsi06G000680 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56240.1	8.4e-08	31.36	phloem protein 2-B13	[more]
AT1G56250.1	1.4e-07	30.77	phloem protein 2-B14	[more]
AT1G09155.1	3.2e-07	29.41	phloem protein 2-B15	[more]

BLAST of Lsi06G000680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435605\|ref\|XP_004135585.1\|	8.9e-36	76.92	PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus]	[more]
gi\|700210925\|gb\|KGN66021.1\|	8.9e-36	76.92	hypothetical protein Csa_1G568500 [Cucumis sativus]	[more]
gi\|659099369\|ref\|XP_008450565.1\|	5.8e-35	79.80	PREDICTED: putative F-box protein PP2-B12 [Cucumis melo]	[more]
gi\|388519251\|gb\|AFK47687.1\|	9.6e-14	49.47	unknown [Lotus japonicus]	[more]
gi\|565355660\|ref\|XP_006344701.1\|	6.2e-13	39.32	PREDICTED: F-box protein PP2-B15-like [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025886	PP2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000680.1	Lsi06G000680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025886	Phloem protein 2-like	PFAM	PF14299	PP2	coord: 3..94 score: 1.8
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 2..95 score: 4.8
None	No IPR available	PANTHER	PTHR32278:SF11	SUBFAMILY NOT NAMED	coord: 2..95 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G000680	Csa1G568500	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000680	CSPI01G25990	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000680	Cucsa.051230	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000680	Cla005171	Watermelon (97103) v1	lsiwmB396
Lsi06G000680	ClCG03G017620	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000680	MELO3C029280.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000680	Cla97C03G068000	Watermelon (97103) v2	lsiwmbB365
Lsi06G000680	Bhi02G001803	Wax gourd	lsiwgoB522
Lsi06G000680	Cp4.1LG04g08490	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000680	CsGy1G025290	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000680	CsaV3_1G038410	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000680	Bottle gourd (USVL1VR-Ls)	lsilsiB060
Lsi06G000680	Cucumber (Gy14) v1	cgylsiB101
Lsi06G000680	Cucurbita maxima (Rimu)	cmalsiB070
Lsi06G000680	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000680	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000680	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000680	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G000680	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G000680	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000680	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000680	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G000680	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G000680	Cucurbita pepo (Zucchini)	cpelsiB095
Lsi06G000680	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000680	Cucurbita pepo (Zucchini)	cpelsiB682
Lsi06G000680	Wild cucumber (PI 183967)	cpilsiB134
Lsi06G000680	Cucumber (Chinese Long) v2	culsiB136
Lsi06G000680	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000680	Melon (DHL92) v3.5.1	lsimeB416
Lsi06G000680	Watermelon (Charleston Gray)	lsiwcgB359
Lsi06G000680	Watermelon (Charleston Gray)	lsiwcgB362
Lsi06G000680	Watermelon (97103) v1	lsiwmB392
Lsi06G000680	Watermelon (97103) v1	lsiwmB409