Cucsa.051230 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.051230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	F-box protein
Location	scaffold00557 : 414102 .. 415778 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTTTACCTCAAGATTGTATTGCACACATTCTCTCATTTGCCTCCGCTCGAGAAGCATGTCGGTTGTCGATTGTCTCGGAGATGATGCACTCAATGGTCGATTCTGATGTTGTATGGGAGAAGTTTCTTCCATTTGATTGTAAGAAAGTTTTGTTGAGATTAGATTCTCCAATAGTTTACGCTACTAAAAAGGAGTTGTATTTCAAGTTATGTTGTCCTCATCTTGTTGATGGGGGCAAGAAGGTACATTTATATATTTATATTGCGATATTTTACATAAATGTCATTTGAATTTTTATTAACTAAGATATATATTTTGGTTAAACGGCGGGCTAGCTAGATGCGTGTAGACTTTGAATGGACTTCATATTTCTTTGAGAAGAATTTATGTCGATCCATCAAAAGTGTCATGCATAGGATTGTAACCTTATCTTTGCTTTCCAAATCATTCCCGTTTCATAAGAATTTTTTTATCATATTTAAATGATATGGATAGATCTTTTTTCCATCGATCGTTTCATACTTGAAATGATCAGGATGAAAGAAATAAGAGCCCCTCTCTCATTTTAGTTAAGAAAGAATGAAATCATGGATTGAAAGAAAGACGAGAGAGAGAGAGAAAGAACATATATATATATATAACATACATCCCTCAACATATTAGCCCAAAACTTGAGAAGAAATTGAAAAGGTTTAGATAGCATTTTTATAAAAGGTTATTTTTGTACGAACAGGCGGTGGATCAAATATGAATTTTAAATGAAAAAAGTTCATATTTGTTTCATTGCTTGTTGATACATCATTTCGCCTTTGAAATGCTTTCACATATCGATAAACTAAACTCTATAATTAGTCTTTTTAATTTCTTTTAATGATTCTACCTTACTGGCCACCATGAGGGCTTTTAAGTTCTGATTATTTCATAGATAGATGAATAAGAATAATGTTTTGTTTTGCAAAATAATGCAGATATTTTATATAGATAAAGAGACAGGTAAGAAATGCTATATTTTAGGTGCAAGGGAACTTCAAATTCAATGGTCAAACAATCCTCTATATTGGTCTTGGAATAGACAACCCTTTCTCAAATCCAGGTCTCTCTCTACTTTCTCTCTTGATATATATATTAACCTCTCACATCTTATATATAGCTAGAAGAATACCTTCAAGTTGTTTTCTCTTCTTAAAATACTTATTCTTTGCTGCTCCATTTTGTTTTTGTTTGAAAATTGGAAGTTTAGGTTTGAAGAAGTTGCAGAATTGAGAACTATATGGTGGCTAGAAATAAAAGGCTCAATCAATACCAAATTGCTTTCCTCAAAAAACACTTTACTTTGCATATCTTTTGGTGAAGTTTGCAGATAGAGCTTATGGATTAAACACTCATCCATCTCAAGCCACAATTCAACTCAACACTGCAGTGACATCTAAAAGAAAAGTGTATTTGCACAAGCAAAGGGAGTACAAAAATCAAATTATCTTTGGCGGAGATAACGATCATGAAATAGATGAAGACAACGACGACAGTTGGATCGAGATCGAGTTGGGGGAGTTTTATGTTCATGATTCTGGAGACAGCATTGTAGAGATGTGCTTGAAAGAAGTCGAGAGTCAACATTTGAGAGGTGGTCTTGTTGTCGAGGGAATTCAACTTAGACCAAAATTGAAACTATAA

mRNA sequence

ATCTTTTACCTCAAGATTGTATTGCACACATTCTCTCATTTGCCTCCGCTCGAGAAGCATGTCGGTTGTCGATTGTCTCGGAGATGATGCACTCAATGGTCGATTCTGATGTTGTATGGGAGAAGTTTCTTCCATTTGATTGTAAGAAAGTTTTGTTGAGATTAGATTCTCCAATAGTTTACGCTACTAAAAAGGAGTTGTATTTCAAGTTATGTTGTCCTCATCTTGTTGATGGGGGCAAGAAGTTTGCAGATAGAGCTTATGGATTAAACACTCATCCATCTCAAGCCACAATTCAACTCAACACTGCAGTGACATCTAAAAGAAAAGTGTATTTGCACAAGCAAAGGGAGTACAAAAATCAAATTATCTTTGGCGGAGATAACGATCATGAAATAGATGAAGACAACGACGACAGTTGGATCGAGATCGAGTTGGGGGAGTTTTATGTTCATGATTCTGGAGACAGCATTGTAGAGATGTGCTTGAAAGAAGTCGAGAGTCAACATTTGAGAGGTGGTCTTGTTGTCGAGGGAATTCAACTTAGACCAAAATTGAAACTATAA

Coding sequence (CDS)

ATCTTTTACCTCAAGATTGTATTGCACACATTCTCTCATTTGCCTCCGCTCGAGAAGCATGTCGGTTGTCGATTGTCTCGGAGATGATGCACTCAATGGTCGATTCTGATGTTGTATGGGAGAAGTTTCTTCCATTTGATTGTAAGAAAGTTTTGTTGAGATTAGATTCTCCAATAGTTTACGCTACTAAAAAGGAGTTGTATTTCAAGTTATGTTGTCCTCATCTTGTTGATGGGGGCAAGAAGTTTGCAGATAGAGCTTATGGATTAAACACTCATCCATCTCAAGCCACAATTCAACTCAACACTGCAGTGACATCTAAAAGAAAAGTGTATTTGCACAAGCAAAGGGAGTACAAAAATCAAATTATCTTTGGCGGAGATAACGATCATGAAATAGATGAAGACAACGACGACAGTTGGATCGAGATCGAGTTGGGGGAGTTTTATGTTCATGATTCTGGAGACAGCATTGTAGAGATGTGCTTGAAAGAAGTCGAGAGTCAACATTTGAGAGGTGGTCTTGTTGTCGAGGGAATTCAACTTAGACCAAAATTGAAACTATAA

Protein sequence

LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVYATKKELYFKLCCPHLVDGGKKFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSWIEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL*

Homology

[Close]

BLAST of Cucsa.051230 vs. Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-13
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1   LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
           +LP+DCI++I+SF S R+AC  + VS+   S V SD VW+KFLP + + ++ R     V+
Sbjct: 63  VLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR---SRVF 122

Query: 61  ATKKELYFKLC-CPHLVDGGKK 82
           A+KKELYF LC  P L++ GKK
Sbjct: 123 ASKKELYFALCHNPVLIEDGKK 141

HSP 2 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 32/103 (31.07%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 140
           K  DR  GL   P +  + L    +SKR +Y    R+ + +       D    +  +D W
Sbjct: 218 KTKDRCPGLGHLPVEVGLGLVGQESSKRFIYFIGPRDRRGR---RETRDVTKPDQREDGW 277

Query: 141 IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRP 184
           +E ELGEF+  +  D I E  + E++S   + GL+++GI+ RP
Sbjct: 278 MEAELGEFFNEERCDEI-EFSVIEIKSPSWKSGLIIQGIEFRP 316

[Close]

BLAST of Cucsa.051230 vs. Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 2   LPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVYA 61
           LP+DCI++I+SF S R+AC  + VS+   S V+SD VW+KFLP D   +   +    V++
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSL---VPPSRVFS 109

Query: 62  TKKELYFKLC-CPHLV-DGGKKF 83
           +KKELYF +C  P LV DGGK F
Sbjct: 110 SKKELYFAICDNPVLVEDGGKSF 129

[Close]

BLAST of Cucsa.051230 vs. Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-12
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 3  PQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVYAT 62
          P+DCI++I+SF + R+AC  + VS+   S V SD++WEKFLP D + +   +    V+++
Sbjct: 18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESL---IPPSRVFSS 77

Query: 63 KKELYFKLC-CPHLVDGGKK 82
          KKELYF LC  P L D  KK
Sbjct: 78 KKELYFSLCNDPVLFDDDKK 94

HSP 2 Score: 44.7 bits (104), Expect = 1.3e-03
Identity = 29/106 (27.36%), Postives = 53/106 (50.00%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 140
           K  D+ YG      +A + +     S+R +         ++ I  G  +    +  +D W
Sbjct: 171 KGVDKCYGFQNVAIEAAVGVVGQEPSRRLICF-------SEAIRRGRRNVVKPKQREDGW 230

Query: 141 IEIELGEFYVHDSG---DSIVEMCLKEVESQHLRGGLVVEGIQLRP 184
           +EIELGEF+ +D G   +  +EM   E +  + + GL+++GI++RP
Sbjct: 231 MEIELGEFF-NDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRP 268

[Close]

BLAST of Cucsa.051230 vs. Swiss-Prot
Match: PP2B3_ARATH (F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP2B3 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 2  LPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVYA 61
          LP++CI++I+SF + R+AC  + VS+   S V SD VWEKFLP D   +   +    V+ 
Sbjct: 16 LPENCISNIISFTTPRDACFAASVSKAFESAVQSDSVWEKFLPLDYSSL---VPESRVFL 75

Query: 62 TKKELYFKLC-CPHLVDGGKK 82
          +KKEL F LC  P L++GGKK
Sbjct: 76 SKKELCFSLCRVPLLIEGGKK 93

[Close]

BLAST of Cucsa.051230 vs. Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 2   LPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVYA 61
           LP+ CI++I+SF S  +AC  + VS++  S V SD+VWEKFLP D + +   +    V++
Sbjct: 27  LPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESL---ITPSRVFS 86

Query: 62  TKKELYFKLC-CPHLVDGGK 81
           +KKELYF LC  P L++ GK
Sbjct: 87  SKKELYFSLCNDPLLIEDGK 103

[Close]

BLAST of Cucsa.051230 vs. TrEMBL
Match: A0A0A0M1G3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568500 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 140
           KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW
Sbjct: 92  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 151

Query: 141 IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 188
           IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL
Sbjct: 152 IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 198

[Close]

BLAST of Cucsa.051230 vs. TrEMBL
Match: V4T0U4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003574mg PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.0e-19
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
           LLP+DC AHILS+ S R+ACRLS+VS  +    DSD VWEKFLP D  ++L RL  P+VY
Sbjct: 259 LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVY 318

Query: 61  ATKKELYFKLCCPHLVDGGKK 82
            +KKEL+ +LC P L+D GKK
Sbjct: 319 FSKKELFMRLCSPVLIDQGKK 339

[Close]

BLAST of Cucsa.051230 vs. TrEMBL
Match: V4T0U4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003574mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQL-NTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDS 140
           KFA+RA+GL++ PS+ ++++ N +  S+  VYL  Q E K Q+  G  +      + +D 
Sbjct: 416 KFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQ-ERKKQVSEG--DGERFAREREDG 475

Query: 141 WIEIELGEFYVHDSGDSI-VEMCLKEVESQHLRGGLVVEGIQLRPK 185
           WIEIELG FY +D GD   VEMCLKEV+ QHL+GGL+VEGI++RPK
Sbjct: 476 WIEIELGSFY-NDGGDGKEVEMCLKEVKGQHLKGGLIVEGIEIRPK 517

HSP 2 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 1   LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
           +LP+DC+A ILS  S  +ACR ++VS  + S   SDVVWEKFLP D + ++ R  + + +
Sbjct: 22  MLPEDCVAIILSLTSPSDACRSTLVSSTLRSAAKSDVVWEKFLPSDYQDLVSRSITSLKF 81

Query: 61  ATKKELYFKLCCPHLVDGGKK 82
           ++KKELY +LC P L+  G+K
Sbjct: 82  SSKKELYLRLCNPTLIANGRK 102

HSP 3 Score: 45.8 bits (107), Expect = 6.6e-02
Identity = 25/91 (27.47%), Postives = 41/91 (45.05%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLH---KQREYKNQIIFG------------ 140
           K   +AYGL+  PS+  +++   + S    YL    K++ +   + +G            
Sbjct: 158 KITHQAYGLDLIPSETFLEMENQIISANIAYLSFKDKKKHHLESLFYGNRKQMVKSRVNT 217

Query: 141 -GDNDHEIDEDNDDSWIEIELGEFYVHDSGD 156
            G  D     ++DD W+E+ELGEF   D  D
Sbjct: 218 EGGGDERFARESDDGWMEVELGEFISGDEED 248

HSP 4 Score: 102.4 bits (254), Expect = 6.0e-19
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
          LLP+DC AHILS+ S R+ACRLS+VS  +    DSD VWEKFLP D  ++L RL  P+VY
Sbjct: 5  LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVY 64

Query: 61 ATKKELYFKLCCPHLVDGGKK 82
           +KKEL+ +LC P L+D GKK
Sbjct: 65 FSKKELFMRLCSPVLIDQGKK 85

[Close]

BLAST of Cucsa.051230 vs. TrEMBL
Match: A0A067H2J3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045590mg PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-02
Identity = 36/104 (34.62%), Postives = 51/104 (49.04%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQL-NTAVTSKRKVYLHKQREYKNQIIFG-------------- 140
           KFA+RA+GL++ PS+ ++++ N +  S+  VYL  Q   K     G              
Sbjct: 162 KFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSR 221

Query: 141 ---GDNDHEIDEDNDDSWIEIELGEFYVHDSGDSIVEMCLKEVE 167
              GD +     + +D WIEIELG FY +D GD       KEVE
Sbjct: 222 VSEGDGE-RFAREREDGWIEIELGSFY-NDGGDG------KEVE 257

HSP 2 Score: 102.1 bits (253), Expect = 7.8e-19
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
          LLP DC AHILS  S R+ACR S+VS  + SM D D VW+KFLP D ++++  L SP+VY
Sbjct: 5  LLPGDCFAHILSLTSPRDACRSSLVSSSVRSMADLDSVWQKFLPSDYEEIIASLVSPVVY 64

Query: 61 ATKKELYFKLCCPHLVDGGKK 82
          ++ KEL+ +LC P L+DGGKK
Sbjct: 65 SSNKELFLRLCSPCLIDGGKK 85

[Close]

BLAST of Cucsa.051230 vs. TrEMBL
Match: A5BIA6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022466 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.8e-19
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 1  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
          LLPQDCI+HILS  S R+ACR  +VS  +    DSD VWEKFLP D +++L RL SP+V+
Sbjct: 5  LLPQDCISHILSCTSPRDACRSELVSTTVRHAGDSDSVWEKFLPSDYQEILSRLVSPLVF 64

Query: 61 ATKKELYFKLCCPHLVDGGKK 82
          A+KKELY KLC P L+D G+K
Sbjct: 65 ASKKELYSKLCSPLLIDEGRK 85

[Close]

BLAST of Cucsa.051230 vs. TAIR10
Match: AT2G02240.1 (AT2G02240.1 F-box family protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-14
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1   LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
           +LP+DCI++I+SF S R+AC  + VS+   S V SD VW+KFLP + + ++ R     V+
Sbjct: 63  VLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR---SRVF 122

Query: 61  ATKKELYFKLC-CPHLVDGGKK 82
           A+KKELYF LC  P L++ GKK
Sbjct: 123 ASKKELYFALCHNPVLIEDGKK 141

HSP 2 Score: 51.6 bits (122), Expect = 6.1e-07
Identity = 32/103 (31.07%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 140
           K  DR  GL   P +  + L    +SKR +Y    R+ + +       D    +  +D W
Sbjct: 218 KTKDRCPGLGHLPVEVGLGLVGQESSKRFIYFIGPRDRRGR---RETRDVTKPDQREDGW 277

Query: 141 IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRP 184
           +E ELGEF+  +  D I E  + E++S   + GL+++GI+ RP
Sbjct: 278 MEAELGEFFNEERCDEI-EFSVIEIKSPSWKSGLIIQGIEFRP 316

[Close]

BLAST of Cucsa.051230 vs. TAIR10
Match: AT2G02250.1 (AT2G02250.1 phloem protein 2-B2)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 2   LPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVYA 61
           LP+DCI++I+SF S R+AC  + VS+   S V+SD VW+KFLP D   +   +    V++
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSL---VPPSRVFS 109

Query: 62  TKKELYFKLC-CPHLV-DGGKKF 83
           +KKELYF +C  P LV DGGK F
Sbjct: 110 SKKELYFAICDNPVLVEDGGKSF 129

[Close]

BLAST of Cucsa.051230 vs. TAIR10
Match: AT2G02360.1 (AT2G02360.1 phloem protein 2-B10)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 3  PQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVYAT 62
          P+DCI++I+SF + R+AC  + VS+   S V SD++WEKFLP D + +   +    V+++
Sbjct: 18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESL---IPPSRVFSS 77

Query: 63 KKELYFKLC-CPHLVDGGKK 82
          KKELYF LC  P L D  KK
Sbjct: 78 KKELYFSLCNDPVLFDDDKK 94

HSP 2 Score: 44.7 bits (104), Expect = 7.5e-05
Identity = 29/106 (27.36%), Postives = 53/106 (50.00%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 140
           K  D+ YG      +A + +     S+R +         ++ I  G  +    +  +D W
Sbjct: 171 KGVDKCYGFQNVAIEAAVGVVGQEPSRRLICF-------SEAIRRGRRNVVKPKQREDGW 230

Query: 141 IEIELGEFYVHDSG---DSIVEMCLKEVESQHLRGGLVVEGIQLRP 184
           +EIELGEF+ +D G   +  +EM   E +  + + GL+++GI++RP
Sbjct: 231 MEIELGEFF-NDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRP 268

[Close]

BLAST of Cucsa.051230 vs. TAIR10
Match: AT1G56240.1 (AT1G56240.1 phloem protein 2-B13)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12
Identity = 39/120 (32.50%), Postives = 58/120 (48.33%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQI-----------------I 140
           K  + AYGL+  P++ +++      +K   YL    E K Q+                  
Sbjct: 161 KVTNGAYGLDLVPAETSVKSKNGQNNKNTTYLCCLDEKKQQMKRLFYGNREERMAMTVEA 220

Query: 141 FGGDNDHEIDEDNDDSWIEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRP 184
            GGD      +  DD W+EIELGEF   +  D  V M L EV+   L+GG+V++GI++RP
Sbjct: 221 VGGDGKRREPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280

HSP 2 Score: 62.4 bits (150), Expect = 3.5e-10
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 1  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLR-LDSPIV 60
          +LP+ C+A+IL+F S  +A   S VS +     DSD VWEKFLP   K ++ +  D   +
Sbjct: 3  MLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRI 62

Query: 61 YATKKELYFKLCCPHLVDGGKK 82
          +++KKE+Y  LC   L+D  +K
Sbjct: 63 FSSKKEIYRCLCDSLLIDNARK 84

[Close]

BLAST of Cucsa.051230 vs. TAIR10
Match: AT1G56250.1 (AT1G56250.1 phloem protein 2-B14)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-12
Identity = 41/121 (33.88%), Postives = 58/121 (47.93%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQI-----------------I 140
           K    AYGL+  P++ +I+      SK   YL    E K Q+                  
Sbjct: 161 KVTKGAYGLDLVPAETSIKSKNGQISKSATYLCCLDEKKQQMKRLFYGNREERMAMTVEA 220

Query: 141 FGGDNDHEIDEDNDDSWIEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRP 185
            GGD      +  DD W+EIELGEF   +  D  V M L EV+   L+GG++++GI++RP
Sbjct: 221 VGGDGKRREPKCRDDGWMEIELGEFETREGEDDEVNMTLTEVKGYQLKGGILIDGIEVRP 280

HSP 2 Score: 61.6 bits (148), Expect = 5.9e-10
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 1  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLR-LDSPIV 60
          +LP+ CIA+IL+F S  +A   S VS +     DSD VWEKFLP D K ++ +  D    
Sbjct: 3  MLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWN 62

Query: 61 YATKKELYFKLCCPHLVDGGKK 82
           ++KKE+Y  LC   L+D  +K
Sbjct: 63 ISSKKEIYRCLCDSLLIDNARK 84

[Close]

BLAST of Cucsa.051230 vs. NCBI nr
Match: gi|449435605|ref|XP_004135585.1| (PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.6e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 140
           KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW
Sbjct: 164 KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 223

Query: 141 IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 188
           IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL
Sbjct: 224 IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 270

[Close]

BLAST of Cucsa.051230 vs. NCBI nr
Match: gi|449435605|ref|XP_004135585.1| (PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
          LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY
Sbjct: 5  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 64

Query: 61 ATKKELYFKLCCPHLVDGGKK 82
          ATKKELYFKLCCPHLVDGGKK
Sbjct: 65 ATKKELYFKLCCPHLVDGGKK 85

HSP 2 Score: 221.1 bits (562), Expect = 1.6e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 140
           KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW
Sbjct: 92  KFADRAYGLNTHPSQATIQLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDSW 151

Query: 141 IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 188
           IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL
Sbjct: 152 IEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 198

[Close]

BLAST of Cucsa.051230 vs. NCBI nr
Match: gi|659099369|ref|XP_008450565.1| (PREDICTED: putative F-box protein PP2-B12 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 89/108 (82.41%), Postives = 97/108 (89.81%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATI-QLNTAVTSKRKVYLHKQREYKNQIIFGGDNDHEIDEDNDDS 140
           KFADRAYGLNTHPSQATI QLNT VTSKRKVYLHKQ+ YKNQ  FGG     ++ED+DDS
Sbjct: 164 KFADRAYGLNTHPSQATIIQLNT-VTSKRKVYLHKQKGYKNQNNFGG-----VEEDDDDS 223

Query: 141 WIEIELGEFYVHDSGDSIVEMCLKEVESQHLRGGLVVEGIQLRPKLKL 188
           WIEIELGEFYV+DS D++VEMCLKE+ESQHLRGGLVVEGIQLRPKLKL
Sbjct: 224 WIEIELGEFYVYDSVDNVVEMCLKEIESQHLRGGLVVEGIQLRPKLKL 265

[Close]

BLAST of Cucsa.051230 vs. NCBI nr
Match: gi|659099369|ref|XP_008450565.1| (PREDICTED: putative F-box protein PP2-B12 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
          LLPQDCIAHILSFASAREACRLSIVSEMMHSM DSDVVWEKFLPFDCK+VLLRLDSP+VY
Sbjct: 5  LLPQDCIAHILSFASAREACRLSIVSEMMHSMADSDVVWEKFLPFDCKEVLLRLDSPLVY 64

Query: 61 ATKKELYFKLCCPHLVDGGKK 82
           TKKELYFKLCCPHL+DGGKK
Sbjct: 65 NTKKELYFKLCCPHLIDGGKK 85

HSP 2 Score: 102.4 bits (254), Expect = 8.6e-19
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1  LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
          LLP+DC AHILS+ S R+ACRLS+VS  +    DSD VWEKFLP D  ++L RL  P+VY
Sbjct: 5  LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVY 64

Query: 61 ATKKELYFKLCCPHLVDGGKK 82
           +KKEL+ +LC P L+D GKK
Sbjct: 65 FSKKELFMRLCSPVLIDQGKK 85

[Close]

BLAST of Cucsa.051230 vs. NCBI nr
Match: gi|641863084|gb|KDO81771.1| (hypothetical protein CISIN_1g045590mg [Citrus sinensis])

HSP 1 Score: 48.1 bits (113), Expect = 1.9e-02
Identity = 36/104 (34.62%), Postives = 51/104 (49.04%), Query Frame = 1


Query: 81  KFADRAYGLNTHPSQATIQL-NTAVTSKRKVYLHKQREYKNQIIFG-------------- 140
           KFA+RA+GL++ PS+ ++++ N +  S+  VYL  Q   K     G              
Sbjct: 162 KFAERAFGLDSLPSEVSLEVGNGSFKSQGTVYLRWQERKKQLECLGHLYFLHRDEALRSR 221

Query: 141 ---GDNDHEIDEDNDDSWIEIELGEFYVHDSGDSIVEMCLKEVE 167
              GD +     + +D WIEIELG FY +D GD       KEVE
Sbjct: 222 VSEGDGE-RFAREREDGWIEIELGSFY-NDGGDG------KEVE 257

HSP 2 Score: 102.4 bits (254), Expect = 8.6e-19
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   LLPQDCIAHILSFASAREACRLSIVSEMMHSMVDSDVVWEKFLPFDCKKVLLRLDSPIVY 60
           LLP+DC AHILS+ S R+ACRLS+VS  +    DSD VWEKFLP D  ++L RL  P+VY
Sbjct: 264 LLPEDCFAHILSYTSPRDACRLSLVSSTVRFAADSDNVWEKFLPVDYMEILPRLVLPLVY 323

Query: 61  ATKKELYFKLCCPHLVDGGKK 82
            +KKEL+ +LC P L+D GKK
Sbjct: 324 FSKKELFMRLCSPVLIDQGKK 344

The following BLAST results are available for this feature:

BLAST of Cucsa.051230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB95_ARATH	5.4e-13	48.78	F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1	[more]
PP2B2_ARATH	2.0e-12	49.40	Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2	[more]
P2B10_ARATH	4.5e-12	46.25	F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1	[more]
PP2B3_ARATH	4.5e-12	46.91	F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP2B3 PE=2 SV=2	[more]
SKIP3_ARATH	5.9e-12	46.25	F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2	[more]

BLAST of Cucsa.051230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1G3_CUCSA	1.1e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568500 PE=4 SV=1	[more]
V4T0U4_9ROSI	6.0e-19	59.26	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003574mg PE=...	[more]
V4T0U4_9ROSI	2.8e-16	50.00	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003574mg PE=...	[more]
A0A067H2J3_CITSI	1.3e-02	34.62	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045590mg PE=4 SV=1	[more]
A5BIA6_VITVI	7.8e-19	60.49	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022466 PE=4 SV=1	[more]

BLAST of Cucsa.051230 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02240.1	3.0e-14	48.78	F-box family protein	[more]
AT2G02250.1	1.1e-13	49.40	phloem protein 2-B2	[more]
AT2G02360.1	2.6e-13	46.25	phloem protein 2-B10	[more]
AT1G56240.1	1.7e-12	32.50	phloem protein 2-B13	[more]
AT1G56250.1	2.2e-12	33.88	phloem protein 2-B14	[more]

BLAST of Cucsa.051230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435605\|ref\|XP_004135585.1\|	1.6e-54	100.00	PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus]	[more]
gi\|449435605\|ref\|XP_004135585.1\|	3.3e-39	100.00	PREDICTED: putative F-box protein PP2-B12 [Cucumis sativus]	[more]
gi\|659099369\|ref\|XP_008450565.1\|	1.5e-39	82.41	PREDICTED: putative F-box protein PP2-B12 [Cucumis melo]	[more]
gi\|659099369\|ref\|XP_008450565.1\|	3.1e-37	93.83	PREDICTED: putative F-box protein PP2-B12 [Cucumis melo]	[more]
gi\|641863084\|gb\|KDO81771.1\|	1.9e-02	34.62	hypothetical protein CISIN_1g045590mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR025886	PP2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.051230.1	Cucsa.051230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 2..42 score: 2.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 2..42 score: 0.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 1..42 score: 10
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 2..71 score: 4.84
IPR025886	Phloem protein 2-like	PFAM	PF14299	PP2	coord: 80..183 score: 3.4
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 2..41 score: 8.
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 1..184 score: 6.9
None	No IPR available	PANTHER	PTHR32278:SF11	SUBFAMILY NOT NAMED	coord: 1..184 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.051230	Cla005171	Watermelon (97103) v1	cgywmB035
Cucsa.051230	Csa1G568500	Cucumber (Chinese Long) v2	cgycuB033
Cucsa.051230	ClCG03G017620	Watermelon (Charleston Gray)	cgywcgB037
Cucsa.051230	CSPI01G25990	Wild cucumber (PI 183967)	cgycpiB034
Cucsa.051230	CmaCh11G012500	Cucurbita maxima (Rimu)	cgycmaB0056
Cucsa.051230	Lsi06G000680	Bottle gourd (USVL1VR-Ls)	cgylsiB033
Cucsa.051230	MELO3C029280.2	Melon (DHL92) v3.6.1	cgymedB029
Cucsa.051230	CsaV3_1G038410	Cucumber (Chinese Long) v3	cgycucB035
Cucsa.051230	Cla97C03G068000	Watermelon (97103) v2	cgywmbB033
Cucsa.051230	Bhi02G001802	Wax gourd	cgywgoB036

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.051230	Cucurbita pepo (Zucchini)	cgycpeB0050
Cucsa.051230	Cucurbita pepo (Zucchini)	cgycpeB0052
Cucsa.051230	Cucurbita maxima (Rimu)	cgycmaB0054
Cucsa.051230	Cucurbita moschata (Rifu)	cgycmoB0049
Cucsa.051230	Cucurbita moschata (Rifu)	cgycmoB0050
Cucsa.051230	Melon (DHL92) v3.5.1	cgymeB030
Cucsa.051230	Watermelon (Charleston Gray)	cgywcgB036