Lsi06G000560 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_219
Location	chr06 : 483441 .. 487021 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCATCGCTATTTTATTATTATTATTATTATTATTATTATTATTTTTTTGGAGAAAATTAGAATTTAGTTCTTATAGTTTGATAAAACTTTCGTAAATAATCCTTATTGCGGGGTTTATTTATGAGGATTTTATCAAACTATATAGAGACTAAACTCTGACTTTTTCCAAACCATTAGAGGGAAGAAATTTGTAATTTAACCTATAAATTATTAAAATTCTATGAATCGGGTGATGTTTTAATATAGTATCAAAGTTAGAGGTTCAATATTTATACTATTCAAATGTAATCTTTTTTTTTTTTTTCTGGTAATTATGTAATAAGTAGCAATTTTAGGAATAATAACAAAGTGTATAGCAACATTTTAAAAAATTGCAAATATAGCAAAGTCTATCCGTGATAGAGTTTTATCGTTGATAGAGTTTTATGGTCTAGGTGGTCTATCACTGATAAACCATAAGAGTCTATCAGCGATAGAACTCTATCACGGATATACTTTGCTATATTTGCAATTTTTTTAAAATGTTGCTATATTTGCAATTGTCCCTTTTTTTTCTACGTAATTGGTAATCACTCGTCAGGTATTCTACAAGTTTTCAAGTAACCTACTAGTGTATTAAAAAAAAGGTTTTTTTTTTTTTTTTTTTTTTTTTGGGTAGGAAAAGTTGATGGAAACTCTCATGAAGTTGCCTGCAATTGGATTAAAGCTTCAAATTTCACCCTCTTTGGTAAAACAAATGCAAAGAAGCACACTATCCAAAAGGAAGAGGATAAATAACCATGCAGCAGAAGCAAGAACAGATCATGATGGTGAAAGGTTGAAGGCCTCTATTTTAGGTGCATTGATGCTTCAAATTGGGTCTTGGCAGGTAATTATAATAATTTTATCGAATCTTTGAAGCTTGTTCGATGATTCATGTTCGTAAAATTTCGAGACGGGTGACTTATAAATGTTAAGATTATTGTGCAACTATTGATAATATGGTGATTTTATGAGGTAACTTTGTAATGTTTGTTTTATGGTATACTTCTTCAGTTAGTGGCTAGAAATGAAGGTGACTTGGTGGCAAAATTCTATTTTGCAAAGAGGCAGCTTGTGTGGGAGATTTTGAGAAATGGGTTGAAAGAAAAAATTGAAATTGAATGGTCAAATATCATAGGAATCCAAGCTTTCTTGGAAGAAAACAAACCAGGAATCTTGGAAGTGGAGGTAATTAACTATTAGGATTATTTTTAAATATAGAAAAATGAGTCAAACTATTTACAAATATAGAAAAATATTACTGTCTATCAGCGATAAACCGCGATAGACTTCTACTGCTTGAGCGATAGACAGCGATAAAATTATATCGTGGTCTATCGTTGATAGACAGTAAAATTTTTCTATATTTATAAATAGTTTGATAATTTTTTTGTTTATAGTAATTTTCCTAACTATTACTTCTATTTTCATACTATAAGATTGACAGTCAATTACGATGTTATTTTGTTTATGAATTTAGTAAGACCAAGTGTTTCCATCTAAACACACAGTTTGTTTATAGTTTGTCCTCGTTTGTTCTTTTGAAATTTTGCAGTTACACCATCCGCCGAAATTTTACAAAGAGATCGAACCTGAGCCACGAAAACACACACAGTGGACCGACGGATCGGATTTTACGGAAGGCCAAGCTTATGTAAACAGGTTTATTCTTTTTGCAGTTTTTAGTTAGATTAATTATAATGATCAAAAGAAGTTTTGTAAAGTTAATGGAGAATTATTTTTTTGTTGTAAACTTTTAGGAGACATTGCATTGTGTTTCCTCCAAAAGTGTTGGACAAACACTATCAGAAACTAAAAGATAAGGATAAGCATTTGTTTGAGCTGAGCCAAAGGCCATTCCCAACTCTAAATTTCTCCTATTTCCCTTCAGAAATTGCTTTCAATCAAATTTCTTCTATTCAATTTGAGGAAATAATGTTCAAAATCCCTTCTTTTCCACCCCATCTTTCAGCTACTGCAATTCACAGCCTAACTTCACCAAAATCAGGTATGCATTTTCTCTATAATACTTAATAAAAAGGAAAATTTTTAAAAATAGAAAAATGAAGGAAACTATTTACACAAAATAGCAAAATTTGTAGATAGTTGTGATAGACACTGATAGAAATCTATCGGAGTCTATCAGTGATAGAAATGATAGAAGTCTATCAATGTCTATCCGTATTATTTTTTTTTTTTTTTTTTTTTTTTTTGCTATTTTCTATAAATATTTTAACATTTTTTCTATCTGTGAAAATTTTTCTAATAAAGAATAATATATTGTTAGTTGTTATCTCTATATATTAGAAATTTTTAGGATTTGTAACCTTTCCTTTTGAAACAATTTGGTTCTCGTTCTTTAGATGTATATTTCTTTGTAATTGCGAAATCACGTGAATCTTTAGATTATTGATGGAATTTTGATTTTAAACTTATTCTGTTCAACTAAGTACAATAGAGATAATATATTTATCTAGTTAAATTAAACATTTAATCTTATACTTTTAAGTATTATGACCAATCTATCTAGTCTCGAGAGACGAAAATTTCAATTATATTCATAAATTTTTTTACTGTTAACACTTGCTAACACAACAACTCTTTTGAAGATTTCACATAGCTGATATGAGCATAGTTCAAATGGTAAAAGACACACATATACTTTTTAACAAGAGGTCAGGGGGTCGAATCTAACTCTATGAAATGGAATAATATATTTACAACATGGCTAAGTAGATAAAAATAAATTATGATTTACATTTATTACAACTTTTGTAATTTTTCCTTACAAATTTGTCTTATAGTTGTTGATTACACGCCACATTTCAATGAGATCATAACCCATGAAGACCAAAGAATGGACGTGTTGAACAAAGGAAACACCATGAGAAGATATGAAGTTGAAGAATCATCAGCCAATTACTACAATGGGTATGATCCAATGGCTTCTTCTATGTTTTGGTTGGGACAAAATGGTGAAGCAGCAGCAACTAATTTGAGTGACCAACCAAACACAAATTATTATGATCATATTGAGTGTAGTTTCAATGGAACTGTTATGGACATGAGAGTCCCTCAAGTCCCAAGTGCCCACTTTTTTAAGTAATTCCACTTAACTAACCATCATGGGTTGGCTTAGTGGTAGTGGAAACATCCAAAAAAAGTCAAAGGACTAAGGGGTTGTGGGTTCAATCCATGGTGGAAACCTACCTAGAGCCCGCCTGTTGTAGGGTCGGGTGGGTTGTCCCGTGAGATTAGTCGAAGTGCGCGTAAGCTGGCAGCCCGTCAAAAAAAAAAAAAAAAAGTAATCCCACTTAACTCAAATAAATGTACTCTAAAACCTTCCAAATTAAATGAATGAATAATTGTCTATTACATTCTCGTAGTTTATTTCTATTAATTTGTATCATTACGGATCAACATCGTAAGTATTGTTGGAAGAGTTACAAATAACGGAGAAAATCGAAGTAAATAATGATAATGAGGTGTGAGTATCTCTCTCTTTTTCAGAAGATTCAAACTCTTTTGTAGTGTGTATATATAATGTTTTTCT

mRNA sequence

ATGGGAAAAGTTGATGGAAACTCTCATGAAGTTGCCTGCAATTGGATTAAAGCTTCAAATTTCACCCTCTTTGCAGAAGCAAGAACAGATCATGATGGTGAAAGGTTGAAGGCCTCTATTTTAGGTGCATTGATGCTTCAAATTGGGTCTTGGCAGTTAGTGGCTAGAAATGAAGGTGACTTGGTGGCAAAATTCTATTTTGCAAAGAGGCAGCTTTTACACCATCCGCCGAAATTTTACAAAGAGATCGAACCTGAGCCACGAAAACACACACAGTGGACCGACGGATCGGATTTTACGGAAGGCCAAGCTTATGAGACATTGCATTGTGTTTCCTCCAAAATTGTTGATTACACGCCACATTTCAATGAGATCATAACCCATGAAGACCAAAGAATGGACGTGTTGAACAAAGGAAACACCATGAGAAGATATGAAGTTGAAGAATCATCAGCCAATTACTACAATGGGTATGATCCAATGGCTTCTTCTATGTTTTGGTTGGGACAAAATGGTGAAGCAGCAGCAACTAATTTGAGTGACCAACCAAACACAAATTATTATGATCATATTGAGTGTAGTTTCAATGGAACTGTTATGGACATGAGAGTCCCTCAAGTCCCAAGTGCCCACTTTTTTAAGTAATTCCACTTAACTAACCATCATGGGTTGGCTTAGTGGTAGTGGAAACATCCAAAAAAAGTCAAAGGACTAAGGGGTTGTGGGTTCAATCCATGGTGGAAACCTACCTAGAGCCCGCCTGTTGTAGGGTCGGGTGGGTTGTCCCGTGAGATTAGTCGAAGTGCGCGTAAGCTGGCAGCCCGTCAAAAAAAAAAAAAAAAAGTAATCCCACTTAACTCAAATAAATGTACTCTAAAACCTTCCAAATTAAATGAATGAATAATTGTCTATTACATTCTCGTAGTTTATTTCTATTAATTTGTATCATTACGGATCAACATCGTAAGTATTGTTGGAAGAGTTACAAATAACGGAGAAAATCGAAGTAAATAATGATAATGAGGTGTGAGTATCTCTCTCTTTTTCAGAAGATTCAAACTCTTTTGTAGTGTGTATATATAATGTTTTTCT

Coding sequence (CDS)

ATGGGAAAAGTTGATGGAAACTCTCATGAAGTTGCCTGCAATTGGATTAAAGCTTCAAATTTCACCCTCTTTGCAGAAGCAAGAACAGATCATGATGGTGAAAGGTTGAAGGCCTCTATTTTAGGTGCATTGATGCTTCAAATTGGGTCTTGGCAGTTAGTGGCTAGAAATGAAGGTGACTTGGTGGCAAAATTCTATTTTGCAAAGAGGCAGCTTTTACACCATCCGCCGAAATTTTACAAAGAGATCGAACCTGAGCCACGAAAACACACACAGTGGACCGACGGATCGGATTTTACGGAAGGCCAAGCTTATGAGACATTGCATTGTGTTTCCTCCAAAATTGTTGATTACACGCCACATTTCAATGAGATCATAACCCATGAAGACCAAAGAATGGACGTGTTGAACAAAGGAAACACCATGAGAAGATATGAAGTTGAAGAATCATCAGCCAATTACTACAATGGGTATGATCCAATGGCTTCTTCTATGTTTTGGTTGGGACAAAATGGTGAAGCAGCAGCAACTAATTTGAGTGACCAACCAAACACAAATTATTATGATCATATTGAGTGTAGTTTCAATGGAACTGTTATGGACATGAGAGTCCCTCAAGTCCCAAGTGCCCACTTTTTTAAGTAA

Protein sequence

MGKVDGNSHEVACNWIKASNFTLFAEARTDHDGERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKRQLLHHPPKFYKEIEPEPRKHTQWTDGSDFTEGQAYETLHCVSSKIVDYTPHFNEIITHEDQRMDVLNKGNTMRRYEVEESSANYYNGYDPMASSMFWLGQNGEAAATNLSDQPNTNYYDHIECSFNGTVMDMRVPQVPSAHFFK

Homology

[Close]

BLAST of Lsi06G000560 vs. TrEMBL
Match: A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-30
Identity = 78/117 (66.67%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 108 LHCVSS--KIVDY-TPHFNEIITHEDQRMDVLNKGNTMRRYEVEESSANYYNGY-----D 167
           +H ++S   +VDY TPHFNEIITH+D+RM+VLNKGN+MRRYE E SS NYYN +     +
Sbjct: 292 IHSLTSPKSVVDYNTPHFNEIITHQDERMEVLNKGNSMRRYEAEASSTNYYNNHGLDNAN 351

Query: 168 PMASSMFWLGQNGE-AAATN-LSDQPNTNYY-DHIECSFNGTVMDMRVPQVPSAHFF 214
           PMA SMFWLGQNGE AAATN LS Q N +YY D+IE  FNG+VMDMR PQ+PS HFF
Sbjct: 352 PMA-SMFWLGQNGEAAAATNYLSHQQNKSYYDDNIEYCFNGSVMDMRTPQLPSGHFF 407

[Close]

BLAST of Lsi06G000560 vs. TrEMBL
Match: A0A0D2UJX9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G001000 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.9e-11
Identity = 51/130 (39.23%), Postives = 65/130 (50.00%), Query Frame = 1


Query: 34  ERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKRQL--------------------- 93
           ++LKAS   A +L+IGSW+  +R EGDLVAK YFAK +L                     
Sbjct: 109 DKLKASNFPAAILRIGSWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIV 168

Query: 94  ---LHHPPKFYKEIEPEPRKHTQWTDGSDFTEGQA-YETLHCVSSKIVDYTPHFNEIITH 139
              L   P F+KE  P+PRKHT W   SDFT GQA     H +         HF ++I H
Sbjct: 169 AIKLARQPLFFKETNPQPRKHTLWQATSDFTGGQASVHRQHFLQCPPGLLGKHFEKLI-H 228

[Close]

BLAST of Lsi06G000560 vs. TrEMBL
Match: A0A067JHP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23215 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 1


Query: 34  ERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKRQL--------------------- 93
           E+LKA+   A +L+IG+W+  A+NE DLVAK Y+AKR+L                     
Sbjct: 123 EKLKAANFSAKVLKIGTWKREAKNESDLVAKCYYAKRKLVWEVLESGLKNKIEIQWNDIT 182

Query: 94  -----------------LHHPPKFYKEIEPEPRKHTQWTDGSDFTEGQAYE-TLHCVSSK 134
                            L+  P F+ E +P+PRKH++W   SDFT GQA     H +   
Sbjct: 183 AMRAFIQENQPGILELELNQAPSFFVEQDPQPRKHSKWQPASDFTGGQASTYRRHYLQFP 242

[Close]

BLAST of Lsi06G000560 vs. TrEMBL
Match: A0A067ENA4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012603mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 38/108 (35.19%), Postives = 49/108 (45.37%), Query Frame = 1


Query: 34  ERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKR----------------------- 93
           ++LKAS     +L+IGSW+  +R EGDLVAK YFAK                        
Sbjct: 53  DKLKASNFPGSLLKIGSWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIV 112

Query: 94  --------------QLLHHPPKFYKEIEPEPRKHTQWTDGSDFTEGQA 105
                          +L   P F++E  P+PRKHT W   SDF+ GQA
Sbjct: 113 AIKATYPDDEPGTLDVLARQPLFFRETNPQPRKHTLWQATSDFSGGQA 160

[Close]

BLAST of Lsi06G000560 vs. TAIR10
Match: AT4G30780.1 (AT4G30780.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.9e-06
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 34  ERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKRQLL 74
           E+LKAS   A +L+IG W+  +R EGDLVAK YFAK +L+
Sbjct: 134 EKLKASNFPASLLKIGQWEYKSRYEGDLVAKCYFAKHKLV 173

[Close]

BLAST of Lsi06G000560 vs. TAIR10
Match: AT2G24100.1 (AT2G24100.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.9e-06
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 34  ERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKRQLL 74
           E+LKAS   A +L+IG W+  +R EGDLVAK YFAK +L+
Sbjct: 107 EKLKASNFPATILRIGQWEYKSRYEGDLVAKCYFAKHKLV 146

[Close]

BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|659099332|ref|XP_008450546.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 6.5e-31
Identity = 78/119 (65.55%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 108 LHCVSS--KIVDY-TPHFNEIITHEDQRMDVLNKGNTMRRYEVEESSANYYNGY------ 167
           +H ++S   +VDY TPHFNEIITH+DQRM+VLNKGN+MRRYEVE SS NYYN Y      
Sbjct: 292 IHSLTSPKSVVDYNTPHFNEIITHQDQRMEVLNKGNSMRRYEVEASSTNYYNNYGYDHGL 351

Query: 168 ---DPMASSMFWLGQNGE-AAATNLSDQPNTNYYDHIECSFNGTVMDMRVPQVPSAHFF 214
              +PMA SMFWLG+NGE AAATNLS Q N ++YDHIEC FNG+  DMR PQ+P  HFF
Sbjct: 352 DNANPMA-SMFWLGRNGEAAAATNLSHQQNKSFYDHIEC-FNGS-EDMRTPQLPGGHFF 407

[Close]

BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|659099334|ref|XP_008450547.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 6.5e-31
Identity = 78/119 (65.55%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 108 LHCVSS--KIVDY-TPHFNEIITHEDQRMDVLNKGNTMRRYEVEESSANYYNGY------ 167
           +H ++S   +VDY TPHFNEIITH+DQRM+VLNKGN+MRRYEVE SS NYYN Y      
Sbjct: 291 IHSLTSPKSVVDYNTPHFNEIITHQDQRMEVLNKGNSMRRYEVEASSTNYYNNYGYDHGL 350

Query: 168 ---DPMASSMFWLGQNGE-AAATNLSDQPNTNYYDHIECSFNGTVMDMRVPQVPSAHFF 214
              +PMA SMFWLG+NGE AAATNLS Q N ++YDHIEC FNG+  DMR PQ+P  HFF
Sbjct: 351 DNANPMA-SMFWLGRNGEAAAATNLSHQQNKSFYDHIEC-FNGS-EDMRTPQLPGGHFF 406

[Close]

BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|700210915|gb|KGN66011.1| (hypothetical protein Csa_1G561420 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 78/117 (66.67%), Postives = 92/117 (78.63%), Query Frame = 1


Query: 108 LHCVSS--KIVDY-TPHFNEIITHEDQRMDVLNKGNTMRRYEVEESSANYYNGY-----D 167
           +H ++S   +VDY TPHFNEIITH+D+RM+VLNKGN+MRRYE E SS NYYN +     +
Sbjct: 292 IHSLTSPKSVVDYNTPHFNEIITHQDERMEVLNKGNSMRRYEAEASSTNYYNNHGLDNAN 351

Query: 168 PMASSMFWLGQNGE-AAATN-LSDQPNTNYY-DHIECSFNGTVMDMRVPQVPSAHFF 214
           PMA SMFWLGQNGE AAATN LS Q N +YY D+IE  FNG+VMDMR PQ+PS HFF
Sbjct: 352 PMA-SMFWLGQNGEAAAATNYLSHQQNKSYYDDNIEYCFNGSVMDMRTPQLPSGHFF 407

[Close]

BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|778662235|ref|XP_011659575.1| (PREDICTED: uncharacterized protein LOC105436206 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 5.0e-15
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 27 ARTDH-DGERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKRQLL 74
          ARTDH DGERLKASILGALMLQIGSWQLVA+NEGDLVAKFYFAKRQL+
Sbjct: 39 ARTDHHDGERLKASILGALMLQIGSWQLVAKNEGDLVAKFYFAKRQLV 86

[Close]

BLAST of Lsi06G000560 vs. NCBI nr
Match: gi|823247258|ref|XP_012456304.1| (PREDICTED: uncharacterized protein LOC105777522 isoform X2 [Gossypium raimondii])

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 51/130 (39.23%), Postives = 65/130 (50.00%), Query Frame = 1


Query: 34  ERLKASILGALMLQIGSWQLVARNEGDLVAKFYFAKRQL--------------------- 93
           ++LKAS   A +L+IGSW+  +R EGDLVAK YFAK +L                     
Sbjct: 109 DKLKASNFPAAILRIGSWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIV 168

Query: 94  ---LHHPPKFYKEIEPEPRKHTQWTDGSDFTEGQA-YETLHCVSSKIVDYTPHFNEIITH 139
              L   P F+KE  P+PRKHT W   SDFT GQA     H +         HF ++I H
Sbjct: 169 AIKLARQPLFFKETNPQPRKHTLWQATSDFTGGQASVHRQHFLQCPPGLLGKHFEKLI-H 228

The following BLAST results are available for this feature:

BLAST of Lsi06G000560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G000560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1F5_CUCSA	1.0e-30	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1	[more]
A0A0D2UJX9_GOSRA	8.9e-11	39.23	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G001000 PE=4 SV=1	[more]
A0A067JHP3_JATCU	6.4e-09	32.37	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23215 PE=4 SV=1	[more]
A0A067ENA4_CITSI	1.0e-06	35.19	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012603mg PE=4 SV=1	[more]

BLAST of Lsi06G000560 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30780.1	5.9e-06	57.50	unknown protein	[more]
AT2G24100.1	5.9e-06	57.50	unknown protein	[more]

BLAST of Lsi06G000560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099332\|ref\|XP_008450546.1\|	6.5e-31	65.55	PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo]	[more]
gi\|659099334\|ref\|XP_008450547.1\|	6.5e-31	65.55	PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo]	[more]
gi\|700210915\|gb\|KGN66011.1\|	1.4e-30	66.67	hypothetical protein Csa_1G561420 [Cucumis sativus]	[more]
gi\|778662235\|ref\|XP_011659575.1\|	5.0e-15	93.75	PREDICTED: uncharacterized protein LOC105436206 [Cucumis sativus]	[more]
gi\|823247258\|ref\|XP_012456304.1\|	1.3e-10	39.23	PREDICTED: uncharacterized protein LOC105777522 isoform X2 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000560.1	Lsi06G000560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33494	FAMILY NOT NAMED	coord: 33..104 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G000560	Csa1G561420	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000560	CSPI01G25870	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000560	Cucsa.051110	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000560	CmaCh10G011140	Cucurbita maxima (Rimu)	cmalsiB070
Lsi06G000560	CmaCh10G011610	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000560	CmoCh10G012390	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000560	Cla005160	Watermelon (97103) v1	lsiwmB396
Lsi06G000560	MELO3C015258	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000560	MELO3C015258.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000560	Cla97C03G068120	Watermelon (97103) v2	lsiwmbB365
Lsi06G000560	Bhi02G001817	Wax gourd	lsiwgoB522
Lsi06G000560	Cp4.1LG18g00240	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000560	CsGy1G025150	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000560	CsaV3_1G038270	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000560	Bottle gourd (USVL1VR-Ls)	lsilsiB060
Lsi06G000560	Cucumber (Gy14) v1	cgylsiB101
Lsi06G000560	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000560	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000560	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G000560	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G000560	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000560	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G000560	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G000560	Cucurbita pepo (Zucchini)	cpelsiB095
Lsi06G000560	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000560	Cucurbita pepo (Zucchini)	cpelsiB682
Lsi06G000560	Wild cucumber (PI 183967)	cpilsiB134
Lsi06G000560	Cucumber (Chinese Long) v2	culsiB136
Lsi06G000560	Melon (DHL92) v3.5.1	lsimeB416
Lsi06G000560	Watermelon (Charleston Gray)	lsiwcgB359
Lsi06G000560	Watermelon (Charleston Gray)	lsiwcgB362
Lsi06G000560	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000560	Watermelon (97103) v1	lsiwmB392
Lsi06G000560	Watermelon (97103) v1	lsiwmB409
Lsi06G000560	Cucumber (Chinese Long) v3	cuclsiB086