Lsi05G022280 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G022280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 28840177 .. 28840434 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTGCGGCCTCAGCGGCGGCGGCGGCTGAGAGAATTGAACTGCCTCGACCACGGGACAAACTCCCAATGAACCTTTCTCCAGACTCTGCTTCCTGCTACCCCCCCGAATCATCTTCTTTCTCAGCTGACCGCATATCCGATACCAACGAGTCATCTCCTTTGCCTGACGGTTTCCACGAGGACGTCGAAATTCAGGTACATACTGCCACCTCTCTCCATTCTAAATTTGCACCCGTTTCCGAGAATTATTGA

mRNA sequence

ATGGCAGCTGCGGCCTCAGCGGCGGCGGCGGCTGAGAGAATTGAACTGCCTCGACCACGGGACAAACTCCCAATGAACCTTTCTCCAGACTCTGCTTCCTGCTACCCCCCCGAATCATCTTCTTTCTCAGCTGACCGCATATCCGATACCAACGAGTCATCTCCTTTGCCTGACGGTTTCCACGAGGACGTCGAAATTCAGGTACATACTGCCACCTCTCTCCATTCTAAATTTGCACCCGTTTCCGAGAATTATTGA

Coding sequence (CDS)

ATGGCAGCTGCGGCCTCAGCGGCGGCGGCGGCTGAGAGAATTGAACTGCCTCGACCACGGGACAAACTCCCAATGAACCTTTCTCCAGACTCTGCTTCCTGCTACCCCCCCGAATCATCTTCTTTCTCAGCTGACCGCATATCCGATACCAACGAGTCATCTCCTTTGCCTGACGGTTTCCACGAGGACGTCGAAATTCAGGTACATACTGCCACCTCTCTCCATTCTAAATTTGCACCCGTTTCCGAGAATTATTGA

Protein sequence

MAAAASAAAAAERIELPRPRDKLPMNLSPDSASCYPPESSSFSADRISDTNESSPLPDGFHEDVEIQVHTATSLHSKFAPVSENY

Homology

[Close]

BLAST of Lsi05G022280 vs. TrEMBL
Match: A0A0A0L3J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116750 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-18
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 3  AAASAAAAAERIELPRPRDKLPMNLSPDSASCYPPESSSFSADRISDTNESSPLPDGFHE 62
          AAA++AAAAE IELPRPRDKLP N S DSASCYPPESSS SADRISDTNESS  PDGF E
Sbjct: 2  AAAASAAAAEIIELPRPRDKLPTNPSLDSASCYPPESSSSSADRISDTNESSSSPDGFQE 61

Query: 63 DVEIQ 68
          DVEIQ
Sbjct: 62 DVEIQ 66

[Close]

BLAST of Lsi05G022280 vs. NCBI nr
Match: gi|659074731|ref|XP_008437766.1| (PREDICTED: GRAM domain-containing protein 1A isoform X2 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.8e-20
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 3  AAASAAAAAERIELPRPRDKLPMNLSPDSASCYPPESSSFSADRISDTNESSPLPDGFHE 62
          AAA++AAA E IELPRPRDKLP NLSPDSASCYPPESSS SADRISDT+ESS  PDGFHE
Sbjct: 2  AAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFHE 61

Query: 63 DVEIQ 68
          DVEIQ
Sbjct: 62 DVEIQ 66

[Close]

BLAST of Lsi05G022280 vs. NCBI nr
Match: gi|659074733|ref|XP_008437767.1| (PREDICTED: GRAM domain-containing protein 1A isoform X3 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.8e-20
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 3  AAASAAAAAERIELPRPRDKLPMNLSPDSASCYPPESSSFSADRISDTNESSPLPDGFHE 62
          AAA++AAA E IELPRPRDKLP NLSPDSASCYPPESSS SADRISDT+ESS  PDGFHE
Sbjct: 2  AAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFHE 61

Query: 63 DVEIQ 68
          DVEIQ
Sbjct: 62 DVEIQ 66

[Close]

BLAST of Lsi05G022280 vs. NCBI nr
Match: gi|659074735|ref|XP_008437768.1| (PREDICTED: GRAM domain-containing protein 1A isoform X4 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.8e-20
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 3  AAASAAAAAERIELPRPRDKLPMNLSPDSASCYPPESSSFSADRISDTNESSPLPDGFHE 62
          AAA++AAA E IELPRPRDKLP NLSPDSASCYPPESSS SADRISDT+ESS  PDGFHE
Sbjct: 2  AAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFHE 61

Query: 63 DVEIQ 68
          DVEIQ
Sbjct: 62 DVEIQ 66

[Close]

BLAST of Lsi05G022280 vs. NCBI nr
Match: gi|659074737|ref|XP_008437769.1| (PREDICTED: uncharacterized protein LOC103483102 isoform X5 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.8e-20
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 3  AAASAAAAAERIELPRPRDKLPMNLSPDSASCYPPESSSFSADRISDTNESSPLPDGFHE 62
          AAA++AAA E IELPRPRDKLP NLSPDSASCYPPESSS SADRISDT+ESS  PDGFHE
Sbjct: 2  AAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFHE 61

Query: 63 DVEIQ 68
          DVEIQ
Sbjct: 62 DVEIQ 66

[Close]

BLAST of Lsi05G022280 vs. NCBI nr
Match: gi|659074729|ref|XP_008437764.1| (PREDICTED: GRAM domain-containing protein 1A isoform X1 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.8e-20
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 3  AAASAAAAAERIELPRPRDKLPMNLSPDSASCYPPESSSFSADRISDTNESSPLPDGFHE 62
          AAA++AAA E IELPRPRDKLP NLSPDSASCYPPESSS SADRISDT+ESS  PDGFHE
Sbjct: 2  AAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFHE 61

Query: 63 DVEIQ 68
          DVEIQ
Sbjct: 62 DVEIQ 66

The following BLAST results are available for this feature:

BLAST of Lsi05G022280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G022280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J6_CUCSA	3.0e-18	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116750 PE=4 SV=1	[more]

BLAST of Lsi05G022280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G022280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074731\|ref\|XP_008437766.1\|	7.8e-20	86.15	PREDICTED: GRAM domain-containing protein 1A isoform X2 [Cucumis melo]	[more]
gi\|659074733\|ref\|XP_008437767.1\|	7.8e-20	86.15	PREDICTED: GRAM domain-containing protein 1A isoform X3 [Cucumis melo]	[more]
gi\|659074735\|ref\|XP_008437768.1\|	7.8e-20	86.15	PREDICTED: GRAM domain-containing protein 1A isoform X4 [Cucumis melo]	[more]
gi\|659074737\|ref\|XP_008437769.1\|	7.8e-20	86.15	PREDICTED: uncharacterized protein LOC103483102 isoform X5 [Cucumis melo]	[more]
gi\|659074729\|ref\|XP_008437764.1\|	7.8e-20	86.15	PREDICTED: GRAM domain-containing protein 1A isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G022280.1	Lsi05G022280.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G022280	Cla021073	Watermelon (97103) v1	lsiwmB365

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G022280	Cucumber (Chinese Long) v3	cuclsiB228
Lsi05G022280	Watermelon (97103) v2	lsiwmbB333
Lsi05G022280	Wax gourd	lsiwgoB433
Lsi05G022280	Cucumber (Gy14) v1	cgylsiB415
Lsi05G022280	Cucurbita maxima (Rimu)	cmalsiB766
Lsi05G022280	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G022280	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G022280	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G022280	Cucumber (Chinese Long) v2	culsiB209
Lsi05G022280	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G022280	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G022280	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G022280	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G022280	Silver-seed gourd	carlsiB926