Cla021073 (gene) Watermelon (97103) v1

Overview
NameCla021073
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 150465 .. 150719 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTGCGGCCTCAGCGGCGGCGGCTGAGATAATTGAACTGCCTCGACCACGAGACAAGCTCCCGATGAACCTATCTCCAGACTCTGCTTCCTGCGACCCCCCCGAATCATCTTCTATCTCAGCTGACCGCATATCCGATACCAACGAGTCTTCTTCTTTGCCCGACGGTTTCCACGAGGACGTCGAAATTCAGGTACATACTGCCACCTCTCTCCTTTCTAAATTCGCACCCGTTTCCGAGAATTATTGA

mRNA sequence

ATGGCAGCTGCGGCCTCAGCGGCGGCGGCTGAGATAATTGAACTGCCTCGACCACGAGACAAGCTCCCGATGAACCTATCTCCAGACTCTGCTTCCTGCGACCCCCCCGAATCATCTTCTATCTCAGCTGACCGCATATCCGATACCAACGAGTCTTCTTCTTTGCCCGACGGTTTCCACGAGGACGTCGAAATTCAGGTACATACTGCCACCTCTCTCCTTTCTAAATTCGCACCCGTTTCCGAGAATTATTGA

Coding sequence (CDS)

ATGGCAGCTGCGGCCTCAGCGGCGGCGGCTGAGATAATTGAACTGCCTCGACCACGAGACAAGCTCCCGATGAACCTATCTCCAGACTCTGCTTCCTGCGACCCCCCCGAATCATCTTCTATCTCAGCTGACCGCATATCCGATACCAACGAGTCTTCTTCTTTGCCCGACGGTTTCCACGAGGACGTCGAAATTCAGGTACATACTGCCACCTCTCTCCTTTCTAAATTCGCACCCGTTTCCGAGAATTATTGA

Protein sequence

MAAAASAAAAEIIELPRPRDKLPMNLSPDSASCDPPESSSISADRISDTNESSSLPDGFHEDVEIQVHTATSLLSKFAPVSENY
Homology
[Close]
BLAST of Cla021073 vs. TrEMBL
Match: A0A0A0L3J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116750 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-22
Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MAAAASAAAAEIIELPRPRDKLPMNLSPDSASCDPPESSSISADRISDTNESSSLPDGFH 60
          MAAAASAAAAEIIELPRPRDKLP N S DSASC PPESSS SADRISDTNESSS PDGF 
Sbjct: 1  MAAAASAAAAEIIELPRPRDKLPTNPSLDSASCYPPESSSSSADRISDTNESSSSPDGFQ 60

Query: 61 EDVEIQ 67
          EDVEIQ
Sbjct: 61 EDVEIQ 66

[Close]
BLAST of Cla021073 vs. NCBI nr
Match: gi|659074733|ref|XP_008437767.1| (PREDICTED: GRAM domain-containing protein 1A isoform X3 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 1  MAAAASAAAAEIIELPRPRDKLPMNLSPDSASCDPPESSSISADRISDTNESSSLPDGFH 60
          MAAAASAAA EIIELPRPRDKLP NLSPDSASC PPESSS SADRISDT+ESSS PDGFH
Sbjct: 1  MAAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFH 60

Query: 61 EDVEIQ 67
          EDVEIQ
Sbjct: 61 EDVEIQ 66

[Close]
BLAST of Cla021073 vs. NCBI nr
Match: gi|659074735|ref|XP_008437768.1| (PREDICTED: GRAM domain-containing protein 1A isoform X4 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 1  MAAAASAAAAEIIELPRPRDKLPMNLSPDSASCDPPESSSISADRISDTNESSSLPDGFH 60
          MAAAASAAA EIIELPRPRDKLP NLSPDSASC PPESSS SADRISDT+ESSS PDGFH
Sbjct: 1  MAAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFH 60

Query: 61 EDVEIQ 67
          EDVEIQ
Sbjct: 61 EDVEIQ 66

[Close]
BLAST of Cla021073 vs. NCBI nr
Match: gi|659074737|ref|XP_008437769.1| (PREDICTED: uncharacterized protein LOC103483102 isoform X5 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 1  MAAAASAAAAEIIELPRPRDKLPMNLSPDSASCDPPESSSISADRISDTNESSSLPDGFH 60
          MAAAASAAA EIIELPRPRDKLP NLSPDSASC PPESSS SADRISDT+ESSS PDGFH
Sbjct: 1  MAAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFH 60

Query: 61 EDVEIQ 67
          EDVEIQ
Sbjct: 61 EDVEIQ 66

[Close]
BLAST of Cla021073 vs. NCBI nr
Match: gi|659074729|ref|XP_008437764.1| (PREDICTED: GRAM domain-containing protein 1A isoform X1 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 1  MAAAASAAAAEIIELPRPRDKLPMNLSPDSASCDPPESSSISADRISDTNESSSLPDGFH 60
          MAAAASAAA EIIELPRPRDKLP NLSPDSASC PPESSS SADRISDT+ESSS PDGFH
Sbjct: 1  MAAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFH 60

Query: 61 EDVEIQ 67
          EDVEIQ
Sbjct: 61 EDVEIQ 66

[Close]
BLAST of Cla021073 vs. NCBI nr
Match: gi|659074731|ref|XP_008437766.1| (PREDICTED: GRAM domain-containing protein 1A isoform X2 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 1 

Query: 1  MAAAASAAAAEIIELPRPRDKLPMNLSPDSASCDPPESSSISADRISDTNESSSLPDGFH 60
          MAAAASAAA EIIELPRPRDKLP NLSPDSASC PPESSS SADRISDT+ESSS PDGFH
Sbjct: 1  MAAAASAAAPEIIELPRPRDKLPTNLSPDSASCYPPESSSSSADRISDTHESSSSPDGFH 60

Query: 61 EDVEIQ 67
          EDVEIQ
Sbjct: 61 EDVEIQ 66

The following BLAST results are available for this feature:
BLAST of Cla021073 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3J6_CUCSA4.4e-2289.39Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116750 PE=4 SV=1[more]
BLAST of Cla021073 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074733|ref|XP_008437767.1|1.1e-2390.91PREDICTED: GRAM domain-containing protein 1A isoform X3 [Cucumis melo][more]
gi|659074735|ref|XP_008437768.1|1.1e-2390.91PREDICTED: GRAM domain-containing protein 1A isoform X4 [Cucumis melo][more]
gi|659074737|ref|XP_008437769.1|1.1e-2390.91PREDICTED: uncharacterized protein LOC103483102 isoform X5 [Cucumis melo][more]
gi|659074729|ref|XP_008437764.1|1.1e-2390.91PREDICTED: GRAM domain-containing protein 1A isoform X1 [Cucumis melo][more]
gi|659074731|ref|XP_008437766.1|1.1e-2390.91PREDICTED: GRAM domain-containing protein 1A isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0050896 response to stimulus
biological_process GO:0010033 response to organic substance
biological_process GO:0042742 defense response to bacterium
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0009723 response to ethylene
biological_process GO:0009751 response to salicylic acid
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU70339watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021073Cla021073.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU70339WMU70339transcribed_cluster