Lsi05G022210 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G022210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cupredoxin superfamily protein
Location	chr05 : 28749230 .. 28749421 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGAAAGCGGCCGCTGTTTTTTATGTTGTTTTGGTAGCGGTGCGGGCGGTTTATGGAGCAGATATCATCGTTGGCGGCAACTCTGGGTGGAACCAGGGGGTGAATTACGACAACTGGGCTGCACGACAGAGTTTTAGTGTTGGCGACGCATTAGGTAACTTCTTACCTTTTACAATACCAGCTTAA

mRNA sequence

ATGGCGATGAAAGCGGCCGCTGTTTTTTATGTTGTTTTGGTAGCGGTGCGGGCGGTTTATGGAGCAGATATCATCGTTGGCGGCAACTCTGGGTGGAACCAGGGGGTGAATTACGACAACTGGGCTGCACGACAGAGTTTTAGTGTTGGCGACGCATTAGGTAACTTCTTACCTTTTACAATACCAGCTTAA

Coding sequence (CDS)

ATGGCGATGAAAGCGGCCGCTGTTTTTTATGTTGTTTTGGTAGCGGTGCGGGCGGTTTATGGAGCAGATATCATCGTTGGCGGCAACTCTGGGTGGAACCAGGGGGTGAATTACGACAACTGGGCTGCACGACAGAGTTTTAGTGTTGGCGACGCATTAGGTAACTTCTTACCTTTTACAATACCAGCTTAA

Protein sequence

MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDALGNFLPFTIPA

Homology

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BLAST of Lsi05G022210 vs. TrEMBL
Match: A0A0A0L6X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116790 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-14
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          MAMKAAAVF VVL+AVRAVYGADIIVGGNSGW+QGV+YD WAA Q F+VGDAL
Sbjct: 1  MAMKAAAVF-VVLIAVRAVYGADIIVGGNSGWSQGVDYDTWAAGQKFNVGDAL 52

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BLAST of Lsi05G022210 vs. NCBI nr
Match: gi|449431954|ref|XP_004133765.1| (PREDICTED: uclacyanin-2 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          MAMKAAAVF VVL+AVRAVYGADIIVGGNSGW+QGV+YD WAA Q F+VGDAL
Sbjct: 1  MAMKAAAVF-VVLIAVRAVYGADIIVGGNSGWSQGVDYDTWAAGQKFNVGDAL 52

[Close]

BLAST of Lsi05G022210 vs. NCBI nr
Match: gi|659074745|ref|XP_008437773.1| (PREDICTED: basic blue protein [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 8.1e-14
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          MAMKAAAVF VVL+AVRAVYGADIIVGG+SGWNQG NYD WA +Q F+VGD L
Sbjct: 1  MAMKAAAVF-VVLIAVRAVYGADIIVGGSSGWNQGFNYDTWATQQKFTVGDTL 52

The following BLAST results are available for this feature:

BLAST of Lsi05G022210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G022210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6X5_CUCSA	1.5e-14	84.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116790 PE=4 SV=1	[more]

BLAST of Lsi05G022210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G022210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431954\|ref\|XP_004133765.1\|	2.1e-14	84.91	PREDICTED: uclacyanin-2 [Cucumis sativus]	[more]
gi\|659074745\|ref\|XP_008437773.1\|	8.1e-14	81.13	PREDICTED: basic blue protein [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR008972	Cupredoxin
IPR003245	Phytocyanin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G022210.1	Lsi05G022210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PROFILE	PS51485	PHYTOCYANIN	coord: 22..63 score: 13
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 22..53 score: 9.
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 21..53 score: 4.5
None	No IPR available	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 1..53 score: 2.2
None	No IPR available	PANTHER	PTHR33021:SF35	SUBFAMILY NOT NAMED	coord: 1..53 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G022210	MELO3C005947	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G022210	Carg24188	Silver-seed gourd	carlsiB088
Lsi05G022210	CsaV3_3G007260	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G022210	Cucumber (Gy14) v1	cgylsiB415
Lsi05G022210	Cucurbita maxima (Rimu)	cmalsiB003
Lsi05G022210	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G022210	Cucurbita maxima (Rimu)	cmalsiB766
Lsi05G022210	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G022210	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G022210	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G022210	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G022210	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G022210	Cucumber (Chinese Long) v2	culsiB209
Lsi05G022210	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G022210	Watermelon (97103) v1	lsiwmB365
Lsi05G022210	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G022210	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G022210	Silver-seed gourd	carlsiB119
Lsi05G022210	Watermelon (97103) v2	lsiwmbB333
Lsi05G022210	Wax gourd	lsiwgoB433