Lsi05G020220 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G020220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 27236499 .. 27239396 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTAATTCAAAGACCATTTAAAACTGTTTTTGAATTTGAATATATATATATATATATATATATTATACTACTAATAAGAAAGAAACACTATAAATAAAGTGAAATTAAAGTGGCCTAAGTTACTAGTACGAAGGAACAAGCAGAGGTCCACGGTCGAGACACTAACCATGCAAAGTGAAATGACGCAGTTCTGTAGGAACTAATCAGATTCGGACTAACAAATGGAAGTTGTGCAGACTTAGTTTTAGCGATAACGATACAATTTCCTATCAGTTCCATTTACTTTCTCTCGTGTCGAACTCTGTTTTATATGATAAGACTTAGAATAACAGATGCCAAAATGCTTTGAGAGGAAGGGCACAACATGGGAGATCTAAAATATCGAGAATCTAGGAGTTCTCCCTGGAGGTGCACAATACACACACGTTTTTGTGTGTTAACAACTGTGGAGTTGAAGACGAACCATGAATTATTGAAACGATTAGTGAATTTGTGAGAGATTACGGATTTATGCAATGAACTACGTAAGGTAAATCATATTTTTGTAAGATATATTTGATGATATTTGAAATTGCAGCAGATCTTCTTTTTATTCCAGCTTCTCATTCACCCAGAGAATATGGTGCAATTGTTTGAAGGATCTGTTTATCTGGCTGACATAAATAGTGTCTTCAATTACATTATAAATTGGAAGTCAATGTGAATGTGAACAAAAACAAATGGTTTTTCTTTCCAAACAGAAAATAATTTTTGTTTTCTTTATAAGAAGAATAAAGCGAAGAAGAATTCTCAAATGCTGGTAGAGCAGAAAAAGCATTTTAAGATTGCTCTACTACTTGTTCCTCGGATTGAGGCTGAGGCTCGGCATCTTCTTCGGAATGTTCGGCCGGGGGCGTGGTATTTTTCTTGTTTGCAGCAGCTTCAAGGACATGGCTATAGTTGCCTTTGACCAGGAAGAGCTGAGCAAAATGGTGCTTGCAGTACAAGACTCCATCAAGAGCAGCATAAGAAGAGTGTGTCAAATGGCATCCACCATGAGCACATCTAAAGCAATTCTTGTGGTAGCATTCCCCCTCCAAAGTGACCTATTCAGGAACCAACAAAAAAACAAAGAAACATACAGTTTCAATTTCCCTAACCATATATCAACTATTTGGAATGGCATTTTAAGTGTTTTAAAAAAAAAAAACTCCAACTAAAAACGCTTTTATAAACACTTAAAAAGTCATCCCAAACAAACAGAGGAATCCAGTAACAATGTATTATACAAGATAGGGGGGGTGAAGAACTACAGACCTTCTCTAATGGATAAACTGTTTTAGTGCAAACAGCACATTTATCTTGAGTTCCAGAGAACATGGAGGAGAGTTTGCTGGGGGTCCTTGTCTGTCAAAGATTATGAAAATTGTAATACTATGCAAAAATTACAGCATTTGCATGAAGAGCACAAGGTTGAAATTGCTAACACATAAACTACCAAATATGAAATGAGGATAAAATGATATCATAGGAGTTCTAACTCAAAGCTGTCCTATTCTCATGACATATTATATCACCATTAGACTCGAGAGCAAGCTCTAAAATAAGAAACAAAATCACTACCATTCAGGTACAAGAATTCCCAGGCCAGTTTGTTTTTATCAAAAATATTAGGAATGGTATATTCAAAATCAAACCCATGATTTGGAGGAAAAATTATTGGATGAAGCTGCCAAAATGTCACTTAATCCTAATAACCATTAGATATGAATTTGAAAATTTGGCGCCTAATAATAACAACCAAACATTTGCAGTTGCTCTCTCATACATCCAACAGAGAATTGCTAATCATAATCTAGCTGACCTAGCCTGAGAAAAGTGAAAAGAGTGGCAACATACCAGTTCATGTTGCTTCTCAGAAGGTTTGGCTATTGTCATTCAATACCATGGAAATGAGAGAATGTCAGGAAATAAGGGAAAAAAATAAAAAGGAACAAACGAAAAAATGGGAGAAATGGAAAGAGATGTTGTAATACTACTTTGAAAGTTCTTGCTGAAGTTTCCAGATTCCTTAAAGAGTTGCTCGAAATGAGTCTTGCAAAACAGGACACCGTCCATCCACGAGTAGCTGCTCATCTGTCATAAACAAACAATTGGGATAAAATCCGCCAAATTCGAATGATGAGATTTGAAATTGAAATAAGTAAAAGAGACTGAATAGAGAAAAACTAACCGAAAGGGTGCCTTTGCAGTGGCTGCATTTGAAGCACTGCTTGTGATAAGGATTCCCCTCAAGGGACAACAAATCAACGACATAAACAGTCTTATCACAAGCCTTGCATTTATCCAACGTTCCTGTGAAAGCCATTATGAAGAAATTACTCTTTTACAAGATCAACTCGATCCGAGACGCAAGAACTTCGGGAGAAGAACAAAAAAAGAGAAAGAAACCACCCCCAGAAACCAAGAAAAACTAGGGCAATTAAAACCCCAAGCCGTCCGAAGCCTTGTCTACCAGATAAAATCGAATGCGACTGGACAAGATGGAAGGCTTCGAAGGATTAAGTACAAGACCAAATTTATACATCAGGTAATGTCGGATTTTGGGGTGTAAATCCAGATGTGGCAGAGAACTGTGAATCACAAGTTGGATCCGCTCCAATTTCGGACAGAATGACTTGTCTATGAGGGAAAGAAGGGCGGATTGGTTGACCATATCAAAGGAATTTGTCGAGCTTTTCGAGAGAACAAAAATGGAGGGCGGAGAGAAGAGATGAAAGCCATTTGCCTTCGATTATCTGACTGGTTCGCCGTTGTGTTCGTTGAACTGGATGACAGCGTTTCCCGGGTTTTTTGCATCGTTTTTATTTTTATTATTATGTTATTTTTTTAGGTTATTATTTTTATTTTTTGA

mRNA sequence

ATGATGAATAAAGCGAAGAAGAATTCTCAAATGCTGGTAGAGCAGAAAAAGCATTTTAAGATTGCTCTACTACTTGTTCCTCGGATTGAGGCTGAGGCTCGGCATCTTCTTCGGAATGTTCGGCCGGGGGCCAGCTTCAAGGACATGGCTATAGTTGCCTTTGACCAGGAAGAGCTGAGCAAAATGGTGCTTGCAGTACAAGACTCCATCAAGAGCAGCATAAGAAGAGTGTGTCAAATGGCATCCACCATGAGCACATCTAAAGCAATTCTTGTGAGAAAAACTAACCGAAAGGGTGCCTTTGCAGTGGCTGCATTTGAAGCACTGCTTGTGATAAGGATTCCCCTCAAGGGACAACAAATCAACGACATAAACAGTCTTATCACAAGCCTTGCATTTATCCAACGTTCCTGTGAAAGCCATTATGAAGAAATTACTCTTTTACAAGATCAACTCGATCCGAGACGCAAGAACTTCGGGAGAAGAACAAAAAAAGAGAAAGAAACCACCCCCAGAAACCAAGAAAAACTAGGGCAATTAAAACCCCAAGCCGTCCGAAGCCTTGTCTACCAGATAAAATCGAATGCGACTGGACAAGATGGAAGGCTTCGAAGGATTAAGTACAAGACCAAATTTATACATCAGGGCGGATTGGTTGACCATATCAAAGGAATTTGTCGAGCTTTTCGAGAGAACAAAAATGGAGGGCGGAGAGAAGAGATGAAAGCCATTTGCCTTCGATTATCTGACTGGTTCGCCGTTGTGTTCGTTGAACTGGATGACAGCGTTTCCCGGGTTATTATTTTTATTTTTTGA

Coding sequence (CDS)

ATGATGAATAAAGCGAAGAAGAATTCTCAAATGCTGGTAGAGCAGAAAAAGCATTTTAAGATTGCTCTACTACTTGTTCCTCGGATTGAGGCTGAGGCTCGGCATCTTCTTCGGAATGTTCGGCCGGGGGCCAGCTTCAAGGACATGGCTATAGTTGCCTTTGACCAGGAAGAGCTGAGCAAAATGGTGCTTGCAGTACAAGACTCCATCAAGAGCAGCATAAGAAGAGTGTGTCAAATGGCATCCACCATGAGCACATCTAAAGCAATTCTTGTGAGAAAAACTAACCGAAAGGGTGCCTTTGCAGTGGCTGCATTTGAAGCACTGCTTGTGATAAGGATTCCCCTCAAGGGACAACAAATCAACGACATAAACAGTCTTATCACAAGCCTTGCATTTATCCAACGTTCCTGTGAAAGCCATTATGAAGAAATTACTCTTTTACAAGATCAACTCGATCCGAGACGCAAGAACTTCGGGAGAAGAACAAAAAAAGAGAAAGAAACCACCCCCAGAAACCAAGAAAAACTAGGGCAATTAAAACCCCAAGCCGTCCGAAGCCTTGTCTACCAGATAAAATCGAATGCGACTGGACAAGATGGAAGGCTTCGAAGGATTAAGTACAAGACCAAATTTATACATCAGGGCGGATTGGTTGACCATATCAAAGGAATTTGTCGAGCTTTTCGAGAGAACAAAAATGGAGGGCGGAGAGAAGAGATGAAAGCCATTTGCCTTCGATTATCTGACTGGTTCGCCGTTGTGTTCGTTGAACTGGATGACAGCGTTTCCCGGGTTATTATTTTTATTTTTTGA

Protein sequence

MMNKAKKNSQMLVEQKKHFKIALLLVPRIEAEARHLLRNVRPGASFKDMAIVAFDQEELSKMVLAVQDSIKSSIRRVCQMASTMSTSKAILVRKTNRKGAFAVAAFEALLVIRIPLKGQQINDINSLITSLAFIQRSCESHYEEITLLQDQLDPRRKNFGRRTKKEKETTPRNQEKLGQLKPQAVRSLVYQIKSNATGQDGRLRRIKYKTKFIHQGGLVDHIKGICRAFRENKNGGRREEMKAICLRLSDWFAVVFVELDDSVSRVIIFIF
Homology
[Close]
BLAST of Lsi05G020220 vs. TrEMBL
Match: A0A0A0L497_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122570 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 59/116 (50.86%), Postives = 65/116 (56.03%), Query Frame = 1 

Query: 157 KNFGRRTKKEKETT---PRNQEKLGQLKPQAVRSLVYQIKSNATGQDGRLRRIKYKTKFI 216
           +  G R KK K      P+ + K GQLKPQAVRSLVYQ+ +NATGQDGRLRRI YK+KFI
Sbjct: 2   QELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKFI 61

Query: 217 HQ------------------------------GGLVDHIKGICRAFRENKNGGRRE 240
           HQ                              GGLVDH KG  RAF ENKNGG RE
Sbjct: 62  HQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGGGLVDHFKGTRRAFCENKNGGWRE 117

[Close]
BLAST of Lsi05G020220 vs. NCBI nr
Match: gi|700201400|gb|KGN56533.1| (hypothetical protein Csa_3G122570 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 59/116 (50.86%), Postives = 65/116 (56.03%), Query Frame = 1 

Query: 157 KNFGRRTKKEKETT---PRNQEKLGQLKPQAVRSLVYQIKSNATGQDGRLRRIKYKTKFI 216
           +  G R KK K      P+ + K GQLKPQAVRSLVYQ+ +NATGQDGRLRRI YK+KFI
Sbjct: 2   QELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKFI 61

Query: 217 HQ------------------------------GGLVDHIKGICRAFRENKNGGRRE 240
           HQ                              GGLVDH KG  RAF ENKNGG RE
Sbjct: 62  HQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGGGLVDHFKGTRRAFCENKNGGWRE 117

The following BLAST results are available for this feature:
BLAST of Lsi05G020220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G020220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L497_CUCSA3.6e-1750.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122570 PE=4 SV=1[more]
BLAST of Lsi05G020220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G020220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201400|gb|KGN56533.1|5.2e-1750.86hypothetical protein Csa_3G122570 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G020220.1Lsi05G020220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G020220Csa3G122570Cucumber (Chinese Long) v2culsiB209
Lsi05G020220CsaV3_3G009080Cucumber (Chinese Long) v3cuclsiB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G020220Silver-seed gourdcarlsiB592
Lsi05G020220Cucumber (Chinese Long) v3cuclsiB227
Lsi05G020220Watermelon (97103) v2lsiwmbB333
Lsi05G020220Wax gourdlsiwgoB448
Lsi05G020220Bottle gourd (USVL1VR-Ls)lsilsiB160
Lsi05G020220Cucumber (Gy14) v1cgylsiB415
Lsi05G020220Cucurbita maxima (Rimu)cmalsiB245
Lsi05G020220Cucurbita maxima (Rimu)cmalsiB320
Lsi05G020220Cucurbita maxima (Rimu)cmalsiB386
Lsi05G020220Cucurbita maxima (Rimu)cmalsiB583
Lsi05G020220Cucurbita maxima (Rimu)cmalsiB764
Lsi05G020220Cucurbita moschata (Rifu)cmolsiB233
Lsi05G020220Cucurbita moschata (Rifu)cmolsiB308
Lsi05G020220Cucurbita moschata (Rifu)cmolsiB371
Lsi05G020220Cucurbita moschata (Rifu)cmolsiB557
Lsi05G020220Cucurbita moschata (Rifu)cmolsiB757
Lsi05G020220Cucurbita pepo (Zucchini)cpelsiB039
Lsi05G020220Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G020220Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G020220Wild cucumber (PI 183967)cpilsiB205
Lsi05G020220Wild cucumber (PI 183967)cpilsiB207
Lsi05G020220Cucumber (Chinese Long) v2culsiB207
Lsi05G020220Melon (DHL92) v3.5.1lsimeB375
Lsi05G020220Melon (DHL92) v3.5.1lsimeB378
Lsi05G020220Watermelon (Charleston Gray)lsiwcgB334
Lsi05G020220Watermelon (Charleston Gray)lsiwcgB335
Lsi05G020220Watermelon (97103) v1lsiwmB364
Lsi05G020220Watermelon (97103) v1lsiwmB365
Lsi05G020220Cucumber (Gy14) v2cgyblsiB196
Lsi05G020220Melon (DHL92) v3.6.1lsimedB396