CsaV3_3G009080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G009080
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 7518739 .. 7519127 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGAACTTGGAGAAAGAGCAAAAAAAAGTAAGAGCAAAGAAAGAAACCACCCCCAGAAACGAAGAAAAACAGGGCAATTGAAACCCCAAGCCGTCCGAAGCCTCGTCTATCAGTTAATAAACAATGCGACTGGACAAGATGGAAGGCTTCGAAGGATTAACTACAAAAGCAAATTTATACATCAGGAAATGTTGGATTTCAGAACTGTGAACCAGAAGATGGATCTGCTCCAATTTCGGAGAAGATGGGTTGTTTCAGAGGAAAATAAGGGGGGGGGGGATTGGTTGACCATTTCAAAGGAACTCGTCGAGCTTTTTGTGAGAACAAAAATGGAGGGTGGAGAGAGAGAGAGAGAGATGAAAGCCATTTGCCTTCCATTATCTGA

mRNA sequence

ATGCAAGAACTTGGAGAAAGAGCAAAAAAAAGTAAGAGCAAAGAAAGAAACCACCCCCAGAAACGAAGAAAAACAGGGCAATTGAAACCCCAAGCCGTCCGAAGCCTCGTCTATCAGTTAATAAACAATGCGACTGGACAAGATGGAAGGCTTCGAAGGATTAACTACAAAAGCAAATTTATACATCAGGAAATGTTGGATTTCAGAACTGTGAACCAGAAGATGGATCTGCTCCAATTTCGGAGAAGATGGGTTGTTTCAGAGGAAAATAAGGGGGGGGGGGATTGGTTGACCATTTCAAAGGAACTCGTCGAGCTTTTTGTGAGAACAAAAATGGAGGGTGGAGAGAGAGAGAGAGAGATGAAAGCCATTTGCCTTCCATTATCTGA

Coding sequence (CDS)

ATGCAAGAACTTGGAGAAAGAGCAAAAAAAAGTAAGAGCAAAGAAAGAAACCACCCCCAGAAACGAAGAAAAACAGGGCAATTGAAACCCCAAGCCGTCCGAAGCCTCGTCTATCAGTTAATAAACAATGCGACTGGACAAGATGGAAGGCTTCGAAGGATTAACTACAAAAGCAAATTTATACATCAGGAAATGTTGGATTTCAGAACTGTGAACCAGAAGATGGATCTGCTCCAATTTCGGAGAAGATGGGTTGTTTCAGAGGAAAATAAGGGGGGGGGGGATTGGTTGACCATTTCAAAGGAACTCGTCGAGCTTTTTGTGAGAACAAAAATGGAGGGTGGAGAGAGAGAGAGAGAGATGAAAGCCATTTGCCTTCCATTATCTGA

Protein sequence

MQELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKFIHQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGGDWLTISKELVELFVRTKMEGGEREREMKAICLPLSX
Homology
[Close]
BLAST of CsaV3_3G009080 vs. NCBI nr
Match: KGN56533.1 (hypothetical protein Csa_3G122570 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 6.5e-46
Identity = 105/127 (82.68%), Postives = 106/127 (83.46%), Query Frame = 0 

Query: 1   MQELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKF 60
           MQELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKF
Sbjct: 1   MQELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKF 60

Query: 61  IHQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGGDWLTISKELVELFVRTKMEGGERERE 120
           IHQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGG  +   K     F   K  GG RERE
Sbjct: 61  IHQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGGGLVDHFKGTRRAFCENK-NGGWRERE 120

Query: 121 MKAICLP 128
                LP
Sbjct: 121 RDESHLP 126

[Close]
BLAST of CsaV3_3G009080 vs. TrEMBL
Match: tr|A0A0A0L497|A0A0A0L497_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122570 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.3e-46
Identity = 105/127 (82.68%), Postives = 106/127 (83.46%), Query Frame = 0 

Query: 1   MQELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKF 60
           MQELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKF
Sbjct: 1   MQELGERAKKSKSKERNHPQKRRKTGQLKPQAVRSLVYQLINNATGQDGRLRRINYKSKF 60

Query: 61  IHQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGGDWLTISKELVELFVRTKMEGGERERE 120
           IHQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGG  +   K     F   K  GG RERE
Sbjct: 61  IHQEMLDFRTVNQKMDLLQFRRRWVVSEENKGGGGLVDHFKGTRRAFCENK-NGGWRERE 120

Query: 121 MKAICLP 128
                LP
Sbjct: 121 RDESHLP 126

The following BLAST results are available for this feature:
BLAST of CsaV3_3G009080 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56533.16.5e-4682.68hypothetical protein Csa_3G122570 [Cucumis sativus][more]
BLAST of CsaV3_3G009080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G009080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G009080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L497|A0A0A0L497_CUCSA4.3e-4682.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122570 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G009080.1CsaV3_3G009080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..28

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G009080Lsi05G020220Bottle gourd (USVL1VR-Ls)cuclsiB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G009080Silver-seed gourdcarcucB0679
CsaV3_3G009080Cucumber (Gy14) v2cgybcucB117
CsaV3_3G009080Cucumber (Gy14) v1cgycucB387
CsaV3_3G009080Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G009080Cucurbita maxima (Rimu)cmacucB0376
CsaV3_3G009080Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G009080Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G009080Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G009080Cucurbita pepo (Zucchini)cpecucB0252
CsaV3_3G009080Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G009080Cucurbita pepo (Zucchini)cpecucB1056
CsaV3_3G009080Wild cucumber (PI 183967)cpicucB144
CsaV3_3G009080Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G009080Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G009080Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G009080Watermelon (Charleston Gray)cucwcgB245
CsaV3_3G009080Watermelon (97103) v1cucwmB239
CsaV3_3G009080Watermelon (97103) v1cucwmB260
CsaV3_3G009080Watermelon (97103) v2cucwmbB206
CsaV3_3G009080Wax gourdcucwgoB277