Lsi05G018570 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G018570
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 25803907 .. 25809882 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTCTGCTTTAAGCATTTGAAGTATTGCTGTCCTTTTGTCTACGAGACAAGACACCCAGTATCTGTAGCGAGCTTCTTTTACTACTTGATGTATGTTTAACTATGACCTTCTTTTACATGGTGAATTTCGATAGAACTGTCTATTTGAACAAGGATTGTTGCCTAAGGAATTGAAGTATGTTGGTATTTCCTCTATTGTTTTTATTTATTTTTTATTTTTTGTTTTTGGGTGCTGGAAGGGTAATCATGGTTGGGACTAAAGAGTTGATCTCATTATGAGTTCCAAGTTTATATTTCTTAGGGTTCCTCCTATACACAATCAAAATACCCCTTGTTTTAGGTTAGAATTTTTAGTGCTCACACTAGAAGTTCTTTTGATGTGGCCGATGCATGGGTTTCATTTTAATATCCATTTGAATGGGCGTTGGACCTGTTCTATCCAATATACATGCAGGTTATTCGGGGTGATTGTCATTTGGAGGTTTGTCGGGGTTGATTTTCTCTTGTTTACATGAAGGTATGCTTTTGCAGTGGGAAGTTATTAACAGCAACCTTCCATTTAAGTCCTGGATCATTTACTCGATGATTAGTATATTTTGGAACATCTTATACATTTTTTTTACGCAGTACAATTTGCTCTGGTGCTGTTGTCTTCTTCCCTCATATCTCTTCTTTCTTCTTTTTTTTCCTTTTTTTTTTCTTCCCCTTTCCTCTTTTCCTCCAATCTCCAAAATTTTATTTCGTTAGGCAAAGCTATCAGTAAAGGTCGGTTGAAACCAGATGTTGCTGAGATAAATTGCATCAAAATTCCCTCCTTCTGGGTATGATCAGAATGGCTGAGACTCACTTGGAAGCATTTCTATTCGCGGTGAATTGGAAAAAAAAATATATGGCAGGTAATGTTGTGCTTGGTTCAAGATATTTATAGGGAAATCTGTAGGTTTGGATTCTCTATTATTTTATTGGATTTGTTCGTAAAAAATAAAATAAAATGAGCAGTACATGATCGAAGTGAACCTTTTACTCACAATTGCGTCTTCTTTGAGGGGCTAGAAAAGTGCATGTTGGACTATGAGTCTATTATGATACTCGATTCATGACTACAGGTTTTCTTTTCTTTTAACTATAAACTTCTTTTTAGCACGTAATGTCTTTGAGTTTAAAAAGATACTACCCTGATTGATGAACTTGAGTGTGAATTGTTTGTGAGAGTATTAACCTAAGCTACACAAATAATGTATCTGATTGCTGGTTGTAGTGTAGTAGCAGTAGATATTGGTTTGGGTAAAAACTTAATGTTTAGTCTTTTTCTCTGGTGTTTGTTCTTTTCTCTCCTCCCACGCCCCTTCTTCTCGTCTTTCCTTTTCAAATAATTTCTTGGTAGGATAACCTGCAAAACGACGGTATGAGAGCTGCAGTCTTTGATTTCAAACTCGGGTTGCGACTTGGATGAGGTGGATGTCAATGTCTTAGTTTGTGCTCGGTATATTGTTTCTGAAGGAACCGAGCACCGACCTATAATGTTGAACCTCACAGCTCGAGTCTTCATCATGTTTATGCTAACCTGGTTAAAATAGGTTAGAACTTTTTGCATCAACTTTGAATAGTTGGGATTGAAGAAGTTCAGATTTTTCCTTGTCCTGGATTACTTAAATTTGAGATTTAAAAACTAGTTTTCATTTTACGTTTAATTTCTCATGCAATGTCTAGCTACAGGATGCTTCTGTTGCCAATATTTGTGTCATTACGACCAAATGAATGTGCTTCTCTTTCATCTCTGTCAAAAATTTCCATAGAACATTCAAAATAACCACTAGATGCTTATTGTTTATGCGTTTTTTTTTTTTTGTATGTTTTTAAATAAGTCTTAACTGAAATAGCCTTTTTCCGTTTTGACATGATCCTTGGTTGAGTTGTCGAGTTATTGCTACGGCTTTTCCTTTATTTTGTCGAGTTGTCGAGTTTGGGCTTTTGCTACATCTGCAGTTTGAGATTTGAATCTCTGTTGAAAGCTTAATGATTTGGATATAGTTGGATGGATTGCTTTATCTCATCTCATTTCTTCCATCCATTTTTGAAATATAAATGATATTTTTCAATATTTTTACTGTTAAATTTCTTATGGAAGACCTTTTCAGCTTCGCTAATAAGTCATCTAAATAATTGATCGATTTGAAATGGCTCCTATCCGAGGAAGATTAAGATCTTTCTTTGAGAGTTTAGTCATAGAGCTGTAAACACGATTGTATTTAAAGGAAAATGCCTTAAGACTTGATCTCTCTTCTTCGTGGTGTATTATGTACGCAACGAGCATCGTGATTTTTGGGGTTTTTTCCTCCTTTTGTGGCTCATTGCCCCTTCGTTGCTATTGGCAAACGATTCTCAGACATTTTTTATCTCGGTTTTCCTTTTTGTGGGTCTACGATTTCATGGCGACGAAAAGTTATTATGGCACCAAACGAGGAAGTTTTTCTGTTAAAAAAAAACTATTTAGAGGTGAAAAGAATGGTTGAATATTTAGTGTCACTTTCTACGTATTTTTATTGTCTTTGGATTTATTCATTTTTTTGCTTTATGTTGGTGTAAATGTAAACACAATTATATCAATCATAGCGTGTCTTTGATCTCAAATTACGGGCCATTCGTGTAATCCACCATAGAGGTTTTCTCCAAATTCCATTCACAATAATATTTGTTTCTCATAAAAAAAAAAATAATAATAACAAGTATGTGCCAAATTGGCAGTTCAATTAAAGCACATCAATATTTAAGTTACAATAATAATTACAAGAATTTAAAAAACAAAAGGGAAAAAATCTAACTGAAATTGGAGTTTAAATATTAATTCCTAATAATTCTCCAACGTCTTACCTTTCTCTCCGTTAGTATTGCTGCTTTAATTGGAATAAACCAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTGCTTTAATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTAGTGATGATGGATCGTTGTACAAAGAAAGGTAATCCTCATTGCTAAAAATAAAACTCGAATTATAAATATGAATAGAAGAAACAAGAGGACATGTATAAAAGGGAACAAAAAAATCTTAATTGAGATGATAAAAGTTAATGTTTTTTTTAGAATTCTTGTAGTACTATTACATACATTACTTTTCACACTATACTTTATTAAATGATATTTTAATGCTATCGTTAAATTATATTGGCATGCCTTACAATAGGAAATTTTCGTCTTTAAAGCTCCATTTAACTATTCTTGGACATTATTTCTCGAAAAAAAAAACTGTTCTTGGACATTATTAGGTTACAACATTTTATTTTATTTATTTATTATCAATAAACAATAATAAATGTTCTTTTTAAGAAATAATAAATGTTATTAACACAGGAAAAGAAGTAATTATAGATGTTCTAAAATTAGTTACTTCAAACAATTTTTACCATTTTTAAAAATAAAATTATATTGTTAAAACCTATTTTCAATTCAATTATGGTTTAACTTGTTAAGAAATATGTTTTTTTTACCAAAATACAGAAGATTCAGATGTCTCAATTCACAAAACTTAAAAAAAGAACTACTAATATTTGTTTATATTTACTTTAAAATAAAAAACAGTCATGTTGTGGTGGCTTTAGATTTTTTTTATTGTGAAGTTAAAACCTATATCAAATTCAAGCATAGTTAATTCGTTAAGACATATATCTTTGACTAAAATGTCAAAGATTTAGATGTCTCACCTAGTCGTAGAACTTAAAAGAAGAACTAATATTTGTTTATAAAAGTTAAATTATCTCTTACGTTGTGTTAGTTGATCTAAGTCTGTCTTTGATAGAGACATTAAGAGTTTATTGGACAAGCCTCCATTTCATCGTCATAAGACCAACTTGAACATATCTTAGATTTTAAAATATATACATCAAAGAGTTCGGAGATTCAAACTGCCTCACTCCCACATGTTGTCAAACTCTAAGAAGAAAAATTCTAATGTCGCAAATCAAATACAAAAGACTAAGATTTTTACTTACTATTTAAAACAAAGAAGTTCAAATAGTTAGGTGGATTAACTATGCTTTGAGATGACTCTTTTGAACCTTCATTTGATAAAGAAAAAAAACGACAATCCAATTCCAACTCTTGTATTATCTATGTGTGTGTTTTTACCATTGCATTGTAAACTTTTAAATTTAAACAATGATCTCTCATAAATTATGAAATTGTTGCATTTAAATCCAATACAAAAAATTGAAATGGTTGCCTTCAAAATTGTTTTTAGTTCAACAATTATGGATGTGAATGTTTGAATCATCGATATCTGGAACGGTCTTTATCCTTCAAGTTAAGTTCATATTGATTTCTTTTATATATGTGAGTGTTTGGACTAGCTTACACCCACCTTAATTAATTTCACGAGATATCCACTTGACTCTACAACATTTAAGTATCAAGTAAACTCATAAGATATTAAATTCTGAGCAGTTGGACATCATAGGTTGAACTCATTTCTCATTTTTTTTTTATTAAACTCATGACCTCACTCGACCATTAGGTCAACTTATGATCATTAAGTTCGGGTTAATATTACATTGAAAGTTCAGACATGCAATTTTAATACCAACACGAGCATAACCGACAACTTTTTTTCATCCATGAGAACAAAATTTCAAATATTTACCTTGTGGAGGAAGTTATAATTCCCAAATCCCACCCAAAATACAAAGAGGAAAATTGAAGGGAATGAAAGAACAAGAAACGAAATGAAACGACGTCGTAGAGTTTTTCAGTTTCGTCGTAATAAATAACAAAGAAAGCAAGCAACGGCAAAAGAAACGCGGGATTCGGAGGCGAAAGTTTTAAATTGTGGCCCATATTTTATATTTGTTAATTTGTTTTTAAAAAAATAATAATTAAAAAACAAAAAAACAAAAAACAAAAAGAAACAAATGTAACGGATTCACCGTTTGCCACTTAGCGCCTCCAATTCCCACATTCCCTTTCTTTCTCTCTCTCTCTCTTTCCCTCTTCCTCTCCTTTCCAATTCCATTCACTTTCCGATCCGATTCGTTCCTTCCTCGATCTCCAGCTTCCAAATCCATCAACAATTTGATGCTATGAAGGTCAGATTTCCGCCATTTATCTATCTGCAATTACCTTTTTTCGTTCACAATCAAACGCTATTTCATATGTACTTCTAATAACAATGCATTCGTCGTTTGATTTCTCTCTAATGGAATTTCTTGATGTTCAATCTTCAGGAACTAACCGGATCGTCTATTTCGGCATCGGAAGATTATCTCTGA

mRNA sequence

ATGTTGGTCTGCTTTAAGCATTTGAAGTATTGCTGTCCTTTTGTCTACGAGACAAGACACCCAGTATCTGTAGCGAGCTTCTTTTACTACTTGATGAACCGAGCACCGACCTATAATGTTGAACCTCACAGCTCGAGTCTTCATCATGTTTATGCTAACCTGGAACTAACCGGATCGTCTATTTCGGCATCGGAAGATTATCTCTGA

Coding sequence (CDS)

ATGTTGGTCTGCTTTAAGCATTTGAAGTATTGCTGTCCTTTTGTCTACGAGACAAGACACCCAGTATCTGTAGCGAGCTTCTTTTACTACTTGATGAACCGAGCACCGACCTATAATGTTGAACCTCACAGCTCGAGTCTTCATCATGTTTATGCTAACCTGGAACTAACCGGATCGTCTATTTCGGCATCGGAAGATTATCTCTGA

Protein sequence

MLVCFKHLKYCCPFVYETRHPVSVASFFYYLMNRAPTYNVEPHSSSLHHVYANLELTGSSISASEDYL
Homology
[Close]
BLAST of Lsi05G018570 vs. TrEMBL
Match: A0A0A0L9C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129730 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.7e-09
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 1  MLVCFKHLKYCCPFVYETRHPVSVASFFYYLM 33
          MLVCFK LKYCCPFVYETRHP SV+SFFYYLM
Sbjct: 1  MLVCFKRLKYCCPFVYETRHPESVSSFFYYLM 32

[Close]
BLAST of Lsi05G018570 vs. NCBI nr
Match: gi|700201583|gb|KGN56716.1| (hypothetical protein Csa_3G129730 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1 

Query: 1  MLVCFKHLKYCCPFVYETRHPVSVASFFYYLM 33
          MLVCFK LKYCCPFVYETRHP SV+SFFYYLM
Sbjct: 1  MLVCFKRLKYCCPFVYETRHPESVSSFFYYLM 32

The following BLAST results are available for this feature:
BLAST of Lsi05G018570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G018570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9C6_CUCSA7.7e-0990.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129730 PE=4 SV=1[more]
BLAST of Lsi05G018570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G018570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201583|gb|KGN56716.1|1.1e-0890.63hypothetical protein Csa_3G129730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G018570.1Lsi05G018570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G018570Csa3G129730Cucumber (Chinese Long) v2culsiB209
Lsi05G018570Cla97C05G083790Watermelon (97103) v2lsiwmbB333
Lsi05G018570CsGy3G010730Cucumber (Gy14) v2cgyblsiB196
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G018570Wax gourdlsiwgoB421
Lsi05G018570Wax gourdlsiwgoB445
Lsi05G018570Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi05G018570Cucumber (Gy14) v1cgylsiB415
Lsi05G018570Cucurbita maxima (Rimu)cmalsiB245
Lsi05G018570Cucurbita maxima (Rimu)cmalsiB356
Lsi05G018570Cucurbita maxima (Rimu)cmalsiB764
Lsi05G018570Cucurbita moschata (Rifu)cmolsiB233
Lsi05G018570Cucurbita moschata (Rifu)cmolsiB345
Lsi05G018570Cucurbita moschata (Rifu)cmolsiB757
Lsi05G018570Cucurbita moschata (Rifu)cmolsiB823
Lsi05G018570Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G018570Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G018570Wild cucumber (PI 183967)cpilsiB124
Lsi05G018570Wild cucumber (PI 183967)cpilsiB128
Lsi05G018570Wild cucumber (PI 183967)cpilsiB207
Lsi05G018570Melon (DHL92) v3.5.1lsimeB360
Lsi05G018570Melon (DHL92) v3.5.1lsimeB378
Lsi05G018570Watermelon (Charleston Gray)lsiwcgB335
Lsi05G018570Watermelon (Charleston Gray)lsiwcgB343
Lsi05G018570Watermelon (97103) v1lsiwmB365
Lsi05G018570Cucumber (Gy14) v2cgyblsiB114
Lsi05G018570Melon (DHL92) v3.6.1lsimedB396
Lsi05G018570Silver-seed gourdcarlsiB156
Lsi05G018570Silver-seed gourdcarlsiB206
Lsi05G018570Silver-seed gourdcarlsiB878
Lsi05G018570Silver-seed gourdcarlsiB983
Lsi05G018570Cucumber (Chinese Long) v3cuclsiB228
Lsi05G018570Watermelon (97103) v2lsiwmbB341