Lsi05G018500 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAATAACACGCGGCATTAAGGCGCTTCAAAGTCGGATTCTGATTCCATTAATCACGAGCCGCGCCAAAGCTCGATGACCGGAGCAATATCAACCGTCGGTGTATATAATCTAACGGCCACAAATTGATTTCCGTCATCTTCCCTTATATCTTCATCACGCGCTCGTCGTCCTCCTTCTGGGTAGCCCTAATTGGTTCGGACTCTCAGCTCAGATCTCCTCCGATCGCTTCGCACCACCGACAGAAAGACCTCAGGAATTTGAATTTCAAGGATCCAGCAATGGTTCTTCTCTAGCTTAGATCTGTTTCTGAAGGTTAGTAGTTGATTCAATATTTTTTTTGCTCTCTTTCAATTTTGATTTTTGTTCTATATGTTTAGTTGTATTGCTCCGTGATTGTTGTGTATGGAGATTCGAACTGTTTCGTCTGTTTCATAAACTTCTCGAGGAAGTCAAGTCATGATGAAAAAATGGAAGAAATAAAAAAAGTTGCCATGGTCAGCGTAGTTTTTTTTTTTTTTGGTTAAAATTTGCTTCAGAAAACGTTGCGATGGTTATTAGTGTCGTTGTGTTCGAGTTAGTTTACTCTTGACGTCTGTTATATGCACGGTAAAGAATGTAAAGAATGTTAAGGAATGATGTATGAAAGTTGCAATTACGTTTTCATAGCTTAGTGCGATTCTAGGTTTGGCGGTTTCTGTTATTGTAAGTAAAGTACGAAACATGGAGTTGGTTATTGATATTGTAGTTTCGGGATTGTTAACTTGGCCAAGGAGTTCAGGAAGATGGAGAGTCTCTTTCTGTCTAGACATTTCACATCTACGGGTTGTTTTCGTTAATGAAATTGGTCAATTAATCCTTTAGTTCTAAGAATCCATGATAATTCAGACAAGTTTCCTCATCAAATACATATTTCCTCAAGATATTCCAGTATTTGCTTGGGTAAAAAATGGAAGTTGTGTTTACTTTGACTTGTATATGTGTTATTTTTTGCACTGATTTTTTACTTATTAAAGAATATGATTACAGGTTTGTAAATTTTGAACCATCCTAGCAGGCAATTCAAGTGTTGTCGGGTATACTTAATTGTTGAATGGCAGATACAATATCTAGTTTCTGGGGTCCTGTCACATCTCCTGAGTGGTGTGAAAAGAATTATGTCTACTCTTCTTATATTGCCGAGTTCTTCAACACGGTATCAAATATTCCATGCCTCATTTTAGCACTTATTGGTCTCGTAAATGCTTTGAGACAAAGGTTTGAGAAGAGGTTTAGTGTTCTTCACATATCAAATATGATCCTCGCCATAGGAAGCATGTTGTATCATGCCACCTTGCAACGAGTGTAAGTCTTCTTCCTTTATATTGAAGAATAAAAGAATGAAGATGACTATGTGGCAGTCCCTTTTTTTTGGCATGGAATTTCTTCATAATTGTTTGAGTTGAACTTTTAAATTTCTATGTAGAGGCTGTAATTTGTAAATCAAAAAGTCTTTAAGCTACCGATATAATATAGATTTTACAAGCGATCAAATTACAAAATGTTGTGTGGAGTTGAGGGACAATATATTTTGGATGTGTATAAGGAAAATATGGTGAACATAGCTTTGTCCTTGTCCATGTCATTATATATTTCTTTTCGGAGACCTTTCGGCTAAAGGAAAGATAGGAGGAAACTGCCAAGCAAATGATTAACTAGACTTATTGGGAAACTTTAGTTTGTTTTTTCAACTGCCCAACAAAAATTTGGACTATGCTGTTTGGTTTGCTTTGTGCTTACACGTCGGGATGGGAAAAAGATTGATTTAGCCATTTAGGCTTACAAGAAACTTAAAAATAATTGTATCCAGTCTGTAGAAGCCGTAGTTTCTTAAAGTAATGGAGTTTGTTTATGTCTATGAACTTATTATAGCTTATTCACACACACACAAGAAAAGAAAAAAAGAGAAAAGAAAAAAAAAATTTAGAACTGTCTCATAATTTCATCAATTATTGGAATTCATTCCCTCATGGATGAATTTTCTGGTTCTTCTATCACCTCTGATTTTCTATTCTTCCAATGCGTTAGGAGTTGCAACTTTTTACATTTTCTTCCCCCTCTAGCCGAGGTTTGGTACATGTAATGATGAGTGCCCTGTGAAATTATTTTTTTCTGGAACTTTAATGGTTTATTTCATTAATAGATGAACGTTAACTATAGCTAGTGGATGATAACTTATTATGCCATGAAATTTCTGAATGTTTTATACAACACAGGCTTGCATGTTCTGTTAAATCTTCATCCACTATAATATCTATTGGATTAAACGATAAATTTAATTTCAGACAACAGCAAGGTGATGAAACACCAATGGTATGGGAAATGCTCCTCTACATCTACATCCTTTATTCACCAGATTGGCACTACCGGAGTACGATGCCTACGTTCTTGTTTCTATATGGAGCTGCCTTTGCTGTTGCCCATGCAATCATACGTTTTGGAGCAGGCTTTAAGGTACATTATGCAATACTATGTCTTCTCTGCATCCCTCGAATGTACAAGTACTATATTCACACGAACGACATACACGCGAAGCGGCTTGCAAAGTTATACTTGGCAACCATCTGTCTTGGGACCGTTTGCTGGCTTTTTGATCGCTTGTACTGCAGGAACATCTCTAGCTGGTATTTCAACCCTCAGGGTCATGCATTATGGCATGTATTAATGGGATTCAATTCTTATTTCGCAAATACATTTTTAATGTTTTGTCGTGCTCAACAACTAGAGTGGAACCCGAAAGTAGTCCACTTTTTGGGGTTGTTTCCATACGTGAAGATTCAAAAACCAAAGAGCCAGTGA AAATAACACGCGGCATTAAGGCGCTTCAAAGTCGGATTCTGATTCCATTAATCACGAGCCGCGCCAAAGCTCGATGACCGGAGCAATATCAACCGTCGGTGTATATAATCTAACGGCCACAAATTGATTTCCGTCATCTTCCCTTATATCTTCATCACGCGCTCGTCGTCCTCCTTCTGGGTAGCCCTAATTGGTTCGGACTCTCAGCTCAGATCTCCTCCGATCGCTTCGCACCACCGACAGAAAGACCTCAGGAATTTGAATTTCAAGGATCCAGCAATGGTTCTTCTCTAGCTTAGATCTGTTTCTGAAGGTTTGTAAATTTTGAACCATCCTAGCAGGCAATTCAAGTGTTGTCGGGTATACTTAATTGTTGAATGGCAGATACAATATCTAGTTTCTGGGGTCCTGTCACATCTCCTGAGTGGTGTGAAAAGAATTATGTCTACTCTTCTTATATTGCCGAGTTCTTCAACACGGTATCAAATATTCCATGCCTCATTTTAGCACTTATTGGTCTCGTAAATGCTTTGAGACAAAGGTTTGAGAAGAGGTTTAGTGTTCTTCACATATCAAATATGATCCTCGCCATAGGAAGCATGTTGTATCATGCCACCTTGCAACGAGTGCTTGCATGTTCTGTTAAATCTTCATCCACTATAATATCTATTGGATTAAACGATAAATTTAATTTCAGACAACAGCAAGGTGATGAAACACCAATGGTATGGGAAATGCTCCTCTACATCTACATCCTTTATTCACCAGATTGGCACTACCGGAGTACGATGCCTACGTTCTTGTTTCTATATGGAGCTGCCTTTGCTGTTGCCCATGCAATCATACGTTTTGGAGCAGGCTTTAAGGTACATTATGCAATACTATGTCTTCTCTGCATCCCTCGAATGTACAAGTACTATATTCACACGAACGACATACACGCGAAGCGGCTTGCAAAGTTATACTTGGCAACCATCTGTCTTGGGACCGTTTGCTGGCTTTTTGATCGCTTGTACTGCAGGAACATCTCTAGCTGGTATTTCAACCCTCAGGGTCATGCATTATGGCATGTATTAATGGGATTCAATTCTTATTTCGCAAATACATTTTTAATGTTTTGTCGTGCTCAACAACTAGAGTGGAACCCGAAAGTAGTCCACTTTTTGGGGTTGTTTCCATACGTGAAGATTCAAAAACCAAAGAGCCAGTGA ATGGCAGATACAATATCTAGTTTCTGGGGTCCTGTCACATCTCCTGAGTGGTGTGAAAAGAATTATGTCTACTCTTCTTATATTGCCGAGTTCTTCAACACGGTATCAAATATTCCATGCCTCATTTTAGCACTTATTGGTCTCGTAAATGCTTTGAGACAAAGGTTTGAGAAGAGGTTTAGTGTTCTTCACATATCAAATATGATCCTCGCCATAGGAAGCATGTTGTATCATGCCACCTTGCAACGAGTGCTTGCATGTTCTGTTAAATCTTCATCCACTATAATATCTATTGGATTAAACGATAAATTTAATTTCAGACAACAGCAAGGTGATGAAACACCAATGGTATGGGAAATGCTCCTCTACATCTACATCCTTTATTCACCAGATTGGCACTACCGGAGTACGATGCCTACGTTCTTGTTTCTATATGGAGCTGCCTTTGCTGTTGCCCATGCAATCATACGTTTTGGAGCAGGCTTTAAGGTACATTATGCAATACTATGTCTTCTCTGCATCCCTCGAATGTACAAGTACTATATTCACACGAACGACATACACGCGAAGCGGCTTGCAAAGTTATACTTGGCAACCATCTGTCTTGGGACCGTTTGCTGGCTTTTTGATCGCTTGTACTGCAGGAACATCTCTAGCTGGTATTTCAACCCTCAGGGTCATGCATTATGGCATGTATTAATGGGATTCAATTCTTATTTCGCAAATACATTTTTAATGTTTTGTCGTGCTCAACAACTAGAGTGGAACCCGAAAGTAGTCCACTTTTTGGGGTTGTTTCCATACGTGAAGATTCAAAAACCAAAGAGCCAGTGA MADTISSFWGPVTSPEWCEKNYVYSSYIAEFFNTVSNIPCLILALIGLVNALRQRFEKRFSVLHISNMILAIGSMLYHATLQRVLACSVKSSSTIISIGLNDKFNFRQQQGDETPMVWEMLLYIYILYSPDWHYRSTMPTFLFLYGAAFAVAHAIIRFGAGFKVHYAILCLLCIPRMYKYYIHTNDIHAKRLAKLYLATICLGTVCWLFDRLYCRNISSWYFNPQGHALWHVLMGFNSYFANTFLMFCRAQQLEWNPKVVHFLGLFPYVKIQKPKSQ
BLAST of Lsi05G018500 vs. Swiss-Prot
Match: ACER3_MOUSE (Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 4.5e-24 Identity = 74/281 (26.33%), Postives = 127/281 (45.20%), Query Frame = 1
BLAST of Lsi05G018500 vs. Swiss-Prot
Match: ACER3_HUMAN (Alkaline ceramidase 3 OS=Homo sapiens GN=ACER3 PE=1 SV=3) HSP 1 Score: 105.9 bits (263), Expect = 7.1e-22 Identity = 72/278 (25.90%), Postives = 124/278 (44.60%), Query Frame = 1
BLAST of Lsi05G018500 vs. Swiss-Prot
Match: YDC1_YEAST (Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDC1 PE=1 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 5.0e-15 Identity = 80/301 (26.58%), Postives = 128/301 (42.52%), Query Frame = 1
BLAST of Lsi05G018500 vs. Swiss-Prot
Match: DCD3A_DICDI (Putative alkaline ceramidase dcd3A OS=Dictyostelium discoideum GN=dcd3A PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.2e-13 Identity = 71/294 (24.15%), Postives = 119/294 (40.48%), Query Frame = 1
BLAST of Lsi05G018500 vs. Swiss-Prot
Match: DCD3B_DICDI (Putative alkaline ceramidase dcd3B OS=Dictyostelium discoideum GN=dcd3B PE=3 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.1e-11 Identity = 74/297 (24.92%), Postives = 121/297 (40.74%), Query Frame = 1
BLAST of Lsi05G018500 vs. TrEMBL
Match: A0A0A0L9D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130320 PE=4 SV=1) HSP 1 Score: 511.5 bits (1316), Expect = 6.3e-142 Identity = 247/277 (89.17%), Postives = 251/277 (90.61%), Query Frame = 1
BLAST of Lsi05G018500 vs. TrEMBL
Match: A0A0D2UTV4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G156200 PE=4 SV=1) HSP 1 Score: 458.4 bits (1178), Expect = 6.3e-126 Identity = 214/277 (77.26%), Postives = 236/277 (85.20%), Query Frame = 1
BLAST of Lsi05G018500 vs. TrEMBL
Match: A0A0B0NPT2_GOSAR (Alkaline ceramidase 3 OS=Gossypium arboreum GN=F383_18020 PE=4 SV=1) HSP 1 Score: 458.4 bits (1178), Expect = 6.3e-126 Identity = 214/277 (77.26%), Postives = 235/277 (84.84%), Query Frame = 1
BLAST of Lsi05G018500 vs. TrEMBL
Match: U5FNC0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08440g PE=4 SV=1) HSP 1 Score: 454.5 bits (1168), Expect = 9.1e-125 Identity = 214/277 (77.26%), Postives = 233/277 (84.12%), Query Frame = 1
BLAST of Lsi05G018500 vs. TrEMBL
Match: B9GFV0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32480g PE=4 SV=1) HSP 1 Score: 454.1 bits (1167), Expect = 1.2e-124 Identity = 218/277 (78.70%), Postives = 233/277 (84.12%), Query Frame = 1
BLAST of Lsi05G018500 vs. TAIR10
Match: AT4G22330.1 (AT4G22330.1 Alkaline phytoceramidase (aPHC)) HSP 1 Score: 418.3 bits (1074), Expect = 3.7e-117 Identity = 202/278 (72.66%), Postives = 224/278 (80.58%), Query Frame = 1
BLAST of Lsi05G018500 vs. NCBI nr
Match: gi|659075822|ref|XP_008438349.1| (PREDICTED: alkaline ceramidase 3-like [Cucumis melo]) HSP 1 Score: 511.9 bits (1317), Expect = 6.9e-142 Identity = 249/277 (89.89%), Postives = 251/277 (90.61%), Query Frame = 1
BLAST of Lsi05G018500 vs. NCBI nr
Match: gi|449432406|ref|XP_004133990.1| (PREDICTED: alkaline ceramidase 3-like [Cucumis sativus]) HSP 1 Score: 511.5 bits (1316), Expect = 9.0e-142 Identity = 247/277 (89.17%), Postives = 251/277 (90.61%), Query Frame = 1
BLAST of Lsi05G018500 vs. NCBI nr
Match: gi|743904501|ref|XP_011045627.1| (PREDICTED: alkaline ceramidase 3-like [Populus euphratica]) HSP 1 Score: 458.4 bits (1178), Expect = 9.0e-126 Identity = 219/277 (79.06%), Postives = 235/277 (84.84%), Query Frame = 1
BLAST of Lsi05G018500 vs. NCBI nr
Match: gi|728835372|gb|KHG14815.1| (Alkaline ceramidase 3 [Gossypium arboreum]) HSP 1 Score: 458.4 bits (1178), Expect = 9.0e-126 Identity = 214/277 (77.26%), Postives = 235/277 (84.84%), Query Frame = 1
BLAST of Lsi05G018500 vs. NCBI nr
Match: gi|1009139956|ref|XP_015887388.1| (PREDICTED: alkaline ceramidase 3-like [Ziziphus jujuba]) HSP 1 Score: 458.4 bits (1178), Expect = 9.0e-126 Identity = 218/277 (78.70%), Postives = 234/277 (84.48%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |