Lsi05G018300 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G018300
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 25571324 .. 25573000 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTATTTTTCTCTCCGTCCTGTGGCTTTTTGCTTGTGTGTGTTGATTGCTTTGGTCGGAGCCGACATTAATGTAGAAGACAATAAGGGTTTGTTTCATCGTCCACTTGGTTTTTTTAAGGGCAAAAGGTTTCGCGGAGGGGGCCTCGGTGGCGGCATTGGCGGTGGTGGAGGTTTTGGCGGCGGAGCTGGCGGTGGTTTGGGTGGTGGCGGAGGACTTGGAGGAGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTGGCGGTCTCGGTGGTGGTGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACTTGGAGGTGGTGGCGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTGGCGGTCTCGGCGGTGGGGGAGGACTTGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTAGTGGAGGCGGGGCGGGAGGTGGCGGTGGATTTGGAGGAGGAGCAGGTGCCGGAGGAGGATTTGGAGGAGGAGCTGGAGGAGGAGGAGGTATCGGCGGAGGTGGAGGATTCGGTGGAGGTGGAGGCTTTGGTGGTGGTGGCGGTTTCGGCGGTGGAGCGGGAATTGGCGGCGGCGGCCACCACTAA

mRNA sequence

ATGGCGTATTTTTCTCTCCGTCCTGTGGCTTTTTGCTTGTGTGTGTTGATTGCTTTGGTCGGAGCCGACATTAATGTAGAAGACAATAAGGGTTTGTTTCATCGTCCACTTGGTTTTTTTAAGGGCAAAAGGTTTCGCGGAGGGGGCCTCGGTGGCGGCATTGGCGGTGGTGGAGGTTTTGGCGGCGGAGCTGGCGGTGGTTTGGGTGGTGGCGGAGGACTTGGAGGAGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTGGCGGTCTCGGTGGTGGTGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACTTGGAGGTGGTGGCGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTGGCGGTCTCGGCGGTGGGGGAGGACTTGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTAGTGGAGGCGGGGCGGGAGGTGGCGGTGGATTTGGAGGAGGAGCAGGTGCCGGAGGAGGATTTGGAGGAGGAGCTGGAGGAGGAGGAGGTATCGGCGGAGGTGGAGGATTCGGTGGAGGTGGAGGCTTTGGTGGTGGTGGCGGTTTCGGCGGTGGAGCGGGAATTGGCGGCGGCGGCCACCACTAA

Coding sequence (CDS)

ATGGCGTATTTTTCTCTCCGTCCTGTGGCTTTTTGCTTGTGTGTGTTGATTGCTTTGGTCGGAGCCGACATTAATGTAGAAGACAATAAGGGTTTGTTTCATCGTCCACTTGGTTTTTTTAAGGGCAAAAGGTTTCGCGGAGGGGGCCTCGGTGGCGGCATTGGCGGTGGTGGAGGTTTTGGCGGCGGAGCTGGCGGTGGTTTGGGTGGTGGCGGAGGACTTGGAGGAGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTGGCGGTCTCGGTGGTGGTGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACGGGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGGGGCGGTCTCGGCGGTGGGGGAGGACTTGGAGGTGGTGGCGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTGGCGGTCTCGGCGGTGGGGGAGGACTTGGAGGTGGAGGTGGTCTCGGTGGTGGCGGAGGACTTGGAGGTGGTAGTGGAGGCGGGGCGGGAGGTGGCGGTGGATTTGGAGGAGGAGCAGGTGCCGGAGGAGGATTTGGAGGAGGAGCTGGAGGAGGAGGAGGTATCGGCGGAGGTGGAGGATTCGGTGGAGGTGGAGGCTTTGGTGGTGGTGGCGGTTTCGGCGGTGGAGCGGGAATTGGCGGCGGCGGCCACCACTAA

Protein sequence

MAYFSLRPVAFCLCVLIALVGADINVEDNKGLFHRPLGFFKGKRFRGGGLGGGIGGGGGFGGGAGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGSGGGAGGGGGFGGGAGAGGGFGGGAGGGGGIGGGGGFGGGGGFGGGGGFGGGAGIGGGGHH
BLAST of Lsi05G018300 vs. TrEMBL
Match: A0A0A0L443_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G131980 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.9e-14
Identity = 247/316 (78.16%), Postives = 250/316 (79.11%), Query Frame = 1

Query: 1   MAYFSLRPVAFCLCVLIALVGADINVEDNKGLFHRPLGFFKG-KRFRGGGLGGGIGGGGG 60
           MA FSLR V FC CVLIALV AD NVEDNKGLFHRPLGF+KG KRFRGGGLGGGIGGGGG
Sbjct: 1   MARFSLRAVVFCFCVLIALVAADNNVEDNKGLFHRPLGFYKGRKRFRGGGLGGGIGGGGG 60

Query: 61  FGGGAGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGG 120
           FGGGAGGG    GGLGGGGGLGGGGG GGG G        GGGGLGGGGGLGGGGGLGGG
Sbjct: 61  FGGGAGGG----GGLGGGGGLGGGGGFGGGAG--------GGGGLGGGGGLGGGGGLGGG 120

Query: 121 GGRGGGGGLGGGGGLGGG--------GGLGGGGGRGGGGGLGGGGGLGGG--------GG 180
           GG GGGGGLGGGGGLG G        GGLGGGGG GGGGGLGGGGGLG G        GG
Sbjct: 121 GGLGGGGGLGGGGGLGHGIYKRGYKRGGLGGGGGLGGGGGLGGGGGLGHGIYKRGFKRGG 180

Query: 181 LGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGG 240
           LGGGGG GGGGGLGGGGGLGGGGGLGGGGG GGGGGLGGGGGLGGGGG    GG GGGGG
Sbjct: 181 LGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGG----GGFGGGGG 240

Query: 241 LGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGG 300
           LGGG G G GGG+GGG G G GGG GGGGG GGGGG GGGGG GGGGG+GG    G GGG
Sbjct: 241 LGGGSGGGLGGGVGGGYGGGAGGGFGGGGGAGGGGGFGGGGGAGGGGGIGG----GAGGG 296

BLAST of Lsi05G018300 vs. NCBI nr
Match: gi|778688443|ref|XP_011652751.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 8.5e-14
Identity = 247/316 (78.16%), Postives = 250/316 (79.11%), Query Frame = 1

Query: 1   MAYFSLRPVAFCLCVLIALVGADINVEDNKGLFHRPLGFFKG-KRFRGGGLGGGIGGGGG 60
           MA FSLR V FC CVLIALV AD NVEDNKGLFHRPLGF+KG KRFRGGGLGGGIGGGGG
Sbjct: 1   MARFSLRAVVFCFCVLIALVAADNNVEDNKGLFHRPLGFYKGRKRFRGGGLGGGIGGGGG 60

Query: 61  FGGGAGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGG 120
           FGGGAGGG    GGLGGGGGLGGGGG GGG G        GGGGLGGGGGLGGGGGLGGG
Sbjct: 61  FGGGAGGG----GGLGGGGGLGGGGGFGGGAG--------GGGGLGGGGGLGGGGGLGGG 120

Query: 121 GGRGGGGGLGGGGGLGGG--------GGLGGGGGRGGGGGLGGGGGLGGG--------GG 180
           GG GGGGGLGGGGGLG G        GGLGGGGG GGGGGLGGGGGLG G        GG
Sbjct: 121 GGLGGGGGLGGGGGLGHGIYKRGYKRGGLGGGGGLGGGGGLGGGGGLGHGIYKRGFKRGG 180

Query: 181 LGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGG 240
           LGGGGG GGGGGLGGGGGLGGGGGLGGGGG GGGGGLGGGGGLGGG    GGGG GGGGG
Sbjct: 181 LGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGG----GGGGFGGGGG 240

Query: 241 LGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGGLGGGGGRGGGGGLGGGGGLGGGGG 300
           LGGG G G GGG+GGG G G GGG GGGGG GGGGG GGGGG GGGGG+GG    G GGG
Sbjct: 241 LGGGSGGGLGGGVGGGYGGGAGGGFGGGGGAGGGGGFGGGGGAGGGGGIGG----GAGGG 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L443_CUCSA5.9e-1478.16Uncharacterized protein OS=Cucumis sativus GN=Csa_3G131980 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778688443|ref|XP_011652751.1|8.5e-1478.16PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G018300.1Lsi05G018300.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 141..151
score: 7.2E-8coord: 167..185
score: 7.2E-8coord: 51..62
score: 7.2E-8coord: 111..126
score: 7.

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G018300Silver-seed gourdcarlsiB156
Lsi05G018300Silver-seed gourdcarlsiB206
Lsi05G018300Silver-seed gourdcarlsiB878
Lsi05G018300Silver-seed gourdcarlsiB983
Lsi05G018300Cucumber (Chinese Long) v3cuclsiB220
Lsi05G018300Cucumber (Chinese Long) v3cuclsiB228
Lsi05G018300Watermelon (97103) v2lsiwmbB341
Lsi05G018300Watermelon (97103) v2lsiwmbB347
Lsi05G018300Wax gourdlsiwgoB421
Lsi05G018300Wax gourdlsiwgoB462
Lsi05G018300Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi05G018300Bottle gourd (USVL1VR-Ls)lsilsiB156
Lsi05G018300Cucumber (Gy14) v1cgylsiB415
Lsi05G018300Cucurbita maxima (Rimu)cmalsiB245
Lsi05G018300Cucurbita maxima (Rimu)cmalsiB356
Lsi05G018300Cucurbita maxima (Rimu)cmalsiB487
Lsi05G018300Cucurbita maxima (Rimu)cmalsiB586
Lsi05G018300Cucurbita maxima (Rimu)cmalsiB764
Lsi05G018300Cucurbita maxima (Rimu)cmalsiB839
Lsi05G018300Cucurbita moschata (Rifu)cmolsiB233
Lsi05G018300Cucurbita moschata (Rifu)cmolsiB345
Lsi05G018300Cucurbita moschata (Rifu)cmolsiB471
Lsi05G018300Cucurbita moschata (Rifu)cmolsiB566
Lsi05G018300Cucurbita moschata (Rifu)cmolsiB757
Lsi05G018300Cucurbita moschata (Rifu)cmolsiB823
Lsi05G018300Cucurbita pepo (Zucchini)cpelsiB120
Lsi05G018300Cucurbita pepo (Zucchini)cpelsiB267
Lsi05G018300Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G018300Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G018300Wild cucumber (PI 183967)cpilsiB124
Lsi05G018300Wild cucumber (PI 183967)cpilsiB128
Lsi05G018300Wild cucumber (PI 183967)cpilsiB201
Lsi05G018300Cucumber (Chinese Long) v2culsiB203
Lsi05G018300Melon (DHL92) v3.5.1lsimeB360
Lsi05G018300Watermelon (Charleston Gray)lsiwcgB335
Lsi05G018300Watermelon (Charleston Gray)lsiwcgB343
Lsi05G018300Watermelon (Charleston Gray)lsiwcgB349
Lsi05G018300Watermelon (97103) v1lsiwmB360
Lsi05G018300Watermelon (97103) v1lsiwmB382
Lsi05G018300Cucumber (Gy14) v2cgyblsiB114
Lsi05G018300Cucumber (Gy14) v2cgyblsiB194
Lsi05G018300Melon (DHL92) v3.6.1lsimedB375