Bhi01G000174 (gene) Wax gourd

Overview
NameBhi01G000174
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionglycine-rich cell wall structural protein-like
Locationchr1 : 4753380 .. 4754430 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTCTCTGTGTGTTCACACTCACAGAGCTAAGCTACCAATGGCGTATTTTTCTCTGCATGCTGTGGCTTTTTGCTTGTGTGTGTTGATTGCTTTGGTCGGAGCCGACAATGTAGAAGACAACAAGGGTTTGTTTCATCGTCCACTTGGTTTTTTTAAGGGTAAAAGGTTTCGTGGAGGGGGCCTCGGTGGTGGCATTGGCGGCGGTGGAGGTCTTGGCGGCGGCGCTGGTGGTGGTTTTGGTGGTGGAGCTGGTGGTGGGTTTGGTGGTGGTGGAGGGCTTGGTGGCGGTGGTGGTTTAGGTGGTGGAGGAGGCTTAGGGCATGGTATTTACAAGAGGGGTTTTAAGCATGGAAGATTCGGAGGAGGTGGCGGTCTCGGCGGCGGTGGAGGACTCGGAGGAGGTGGCGGTGGAGGACTTGGAGGAGGTGGTGGGCTCGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGTCTTGGTGGTGGTGGAGGACTTGGAGGTGGTAGTGGAGGCGGTCTCGGTGGAGGAGCTGGTGGAGGCTTTGGTGGTGGAGGTGGTGCGGGTGGCGGCGGCGGATTTGGAAGTGGCGGAGGTGGCGGTGGAGGCTTTGGTGGTGGTGGTGGTTACGGCGGTGGAGCAGGAATTGGCGGCGGCGGCCACCACTAAATGCAATGTGTTAAAATTAAATATATCTATTTCATATCTAAATTGTGAAAATTAATGTCCAGCTATCCAACTACCGTGTCCTTTTATCATTGTTTTCATGTAGAAGAGGTGATTTTCAATTATGTAATTTGAAATGTAATTTATAGAAACGAAAGGCAAAAGTAATTTGCTTGGAAAAAATGGTGATCGGAAATCACCTTTTATCTCCTCCGTTCGTGGTCAGTACGGTGCGTTTTGGATGAACAGATCTAGACCAGATCTTCTTCATGCATGCAGAGTATGGCGCTTGCTATTCATGTAAAGCAGTGTTATTAATTATTATTGCATCCTCTTTTTCTTATCTTATTCTACCTCACTAATTAATTAATTCAAATAATTATGTTTTTTT

mRNA sequence

ACTTCTCTGTGTGTTCACACTCACAGAGCTAAGCTACCAATGGCGTATTTTTCTCTGCATGCTGTGGCTTTTTGCTTGTGTGTGTTGATTGCTTTGGTCGGAGCCGACAATGTAGAAGACAACAAGGGTTTGTTTCATCGTCCACTTGGTTTTTTTAAGGGTAAAAGGTTTCGTGGAGGGGGCCTCGGTGGTGGCATTGGCGGCGGTGGAGGTCTTGGCGGCGGCGCTGGTGGTGGTTTTGGTGGTGGAGCTGGTGGTGGGTTTGGTGGTGGTGGTGGGCTCGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGTCTTGGTGGTGGTGGAGGACTTGGAGGTGGTAGTGGAGGCGGTCTCGGTGGAGGAGCTGGTGGAGGCTTTGGTGGTGGAGGTGGTGCGGGTGGCGGCGGCGGATTTGGAAGTGGCGGAGGTGGCGGTGGAGGCTTTGGTGGTGGTGGTGGTTACGGCGGTGGAGCAGGAATTGGCGGCGGCGGCCACCACTAAATGCAATGTGTTAAAATTAAATATATCTATTTCATATCTAAATTGTGAAAATTAATGTCCAGCTATCCAACTACCGTGTCCTTTTATCATTGTTTTCATGTAGAAGAGGTGATTTTCAATTATGTAATTTGAAATGTAATTTATAGAAACGAAAGGCAAAAGTAATTTGCTTGGAAAAAATGGTGATCGGAAATCACCTTTTATCTCCTCCGTTCGTGGTCAGTACGGTGCGTTTTGGATGAACAGATCTAGACCAGATCTTCTTCATGCATGCAGAGTATGGCGCTTGCTATTCATGTAAAGCAGTGTTATTAATTATTATTGCATCCTCTTTTTCTTATCTTATTCTACCTCACTAATTAATTAATTCAAATAATTATGTTTTTTT

Coding sequence (CDS)

ACTTCTCTGTGTGTTCACACTCACAGAGCTAAGCTACCAATGGCGTATTTTTCTCTGCATGCTGTGGCTTTTTGCTTGTGTGTGTTGATTGCTTTGGTCGGAGCCGACAATGTAGAAGACAACAAGGGTTTGTTTCATCGTCCACTTGGTTTTTTTAAGGGTAAAAGGTTTCGTGGAGGGGGCCTCGGTGGTGGCATTGGCGGCGGTGGAGGTCTTGGCGGCGGCGCTGGTGGTGGTTTTGGTGGTGGAGCTGGTGGTGGGTTTGGTGGTGGTGGTGGGCTCGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGTCTTGGTGGTGGTGGAGGACTTGGAGGTGGTAGTGGAGGCGGTCTCGGTGGAGGAGCTGGTGGAGGCTTTGGTGGTGGAGGTGGTGCGGGTGGCGGCGGCGGATTTGGAAGTGGCGGAGGTGGCGGTGGAGGCTTTGGTGGTGGTGGTGGTTACGGCGGTGGAGCAGGAATTGGCGGCGGCGGCCACCACTAA

Protein sequence

TSLCVHTHRAKLPMAYFSLHAVAFCLCVLIALVGADNVEDNKGLFHRPLGFFKGKRFRGGGLGGGIGGGGGLGGGAGGGFGGGAGGGFGGGGGLGGGGGLGGGGGLGGGGGLGGGSGGGLGGGAGGGFGGGGGAGGGGGFGSGGGGGGGFGGGGGYGGGAGIGGGGHH
Homology
[Close]
BLAST of Bhi01G000174 vs. TrEMBL
Match: tr|A0A0A0L443|A0A0A0L443_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131980 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.2e-12
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 14 MAYFSLHAVAFCLCVLIALVGAD-NVEDNKGLFHRPLGFFKG-KRFRGGG 62
          MA FSL AV FC CVLIALV AD NVEDNKGLFHRPLGF+KG KRFRGGG
Sbjct: 1  MARFSLRAVVFCFCVLIALVAADNNVEDNKGLFHRPLGFYKGRKRFRGGG 50

[Close]
BLAST of Bhi01G000174 vs. TrEMBL
Match: tr|A0A1S3AY80|A0A1S3AY80_CUCME (glycine-rich cell wall structural protein-like OS=Cucumis melo OX=3656 GN=LOC103484174 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.8e-12
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 14 MAYFSLHAVAFCLCVLIALVGAD-NVEDNKGLFHRPLGFFKG-KRFRGGG 62
          MA FSL AV FC CVLIA VGAD NVEDNKGLFHRPLGF KG KRFRGGG
Sbjct: 1  MACFSLRAVVFCFCVLIAFVGADNNVEDNKGLFHRPLGFIKGRKRFRGGG 50

[Close]
BLAST of Bhi01G000174 vs. NCBI nr
Match: XP_022924294.1 (glycine-rich cell wall structural protein-like [Cucurbita moschata])

HSP 1 Score: 80.9 bits (198), Expect = 4.6e-12
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 3  LCVHTHRAKLPMAYFSLHAVAFCLCVLIALVGADN-VEDNKGLFHRPLGFFKGKRFRGGG 62
          LCV   RAKLPMA FSL +VAF +CV IALVGADN VED+K LFHRPLGF KG+ FRGGG
Sbjct: 5  LCV--IRAKLPMASFSLRSVAFWVCVGIALVGADNVVEDDKRLFHRPLGFLKGRGFRGGG 62

[Close]
BLAST of Bhi01G000174 vs. NCBI nr
Match: XP_011652751.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus] >KGN56745.1 hypothetical protein Csa_3G131980 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-12
Identity = 42/50 (84.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 14 MAYFSLHAVAFCLCVLIALVGAD-NVEDNKGLFHRPLGFFKG-KRFRGGG 62
          MA FSL AV FC CVLIALV AD NVEDNKGLFHRPLGF+KG KRFRGGG
Sbjct: 1  MARFSLRAVVFCFCVLIALVAADNNVEDNKGLFHRPLGFYKGRKRFRGGG 50

[Close]
BLAST of Bhi01G000174 vs. NCBI nr
Match: XP_008439359.1 (PREDICTED: glycine-rich cell wall structural protein-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 14 MAYFSLHAVAFCLCVLIALVGAD-NVEDNKGLFHRPLGFFKG-KRFRGGG 62
          MA FSL AV FC CVLIA VGAD NVEDNKGLFHRPLGF KG KRFRGGG
Sbjct: 1  MACFSLRAVVFCFCVLIAFVGADNNVEDNKGLFHRPLGFIKGRKRFRGGG 50

[Close]
BLAST of Bhi01G000174 vs. NCBI nr
Match: XP_023526931.1 (glycine-rich cell wall structural protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 7.4e-10
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 14 MAYFSLHAVAFCLCVLIALVGADN-VEDNKGLFHRPLGFFKGKRFRGGGL 63
          MA FSL AVAF +CV IALVGADN VED+K LFHRPLGF KG+ FRGGGL
Sbjct: 1  MASFSLRAVAFWVCVGIALVGADNVVEDDKRLFHRPLGFLKGRGFRGGGL 50

[Close]
BLAST of Bhi01G000174 vs. NCBI nr
Match: XP_023540167.1 (acanthoscurrin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.9 bits (172), Expect = 4.8e-09
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 9  RAKLP-MAYFSLHAVAFCLCVLIALVGADNVEDNKGLFHRPLGFFKGK 56
          RAK P MA FSL   AFC C+LIALVGA+NVED+K  FHRPLG+FKGK
Sbjct: 5  RAKRPIMASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGK 52

The following BLAST results are available for this feature:
BLAST of Bhi01G000174 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi01G000174 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi01G000174 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L443|A0A0A0L443_CUCSA5.2e-1284.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131980 PE=4 SV=1[more]
tr|A0A1S3AY80|A0A1S3AY80_CUCME6.8e-1284.00glycine-rich cell wall structural protein-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
BLAST of Bhi01G000174 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022924294.14.6e-1275.00glycine-rich cell wall structural protein-like [Cucurbita moschata][more]
XP_011652751.17.9e-1284.00PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus] >K... [more]
XP_008439359.11.0e-1184.00PREDICTED: glycine-rich cell wall structural protein-like [Cucumis melo][more]
XP_023526931.17.4e-1078.00glycine-rich cell wall structural protein-like [Cucurbita pepo subsp. pepo][more]
XP_023540167.14.8e-0972.92acanthoscurrin-2-like [Cucurbita pepo subsp. pepo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M000174Bhi01M000174mRNA