Lsi05G013490 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G013490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA-binding family protein
Location	chr05 : 21355440 .. 21360880 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACTCCTTTTCTTTCTCCTTCTTCGACTCTCTTATAATTTATTTCCTGACATTCGTGTCTGGGATGAACTGATGGGCAATTTTCTTTTCTGGAGGGAAACGGGAAGTGTGCTTCGTACGCCATGAGCGGGAGCAACGTAAACAAGGTCTTCTACGCCGATAACTACCATCCCATTCAAGCCGGCAGCATCGACGGCACCGATATTCTTCCCCACGACAACGCCGTCTACCGAGCTTTGCTCTGTTCCTCTGCTGGCCTCTGTAATTCTCTCCCTTCTAATTTTTCAACGCCCATTTTGCATTTGTTGATGTTCTTCACCGTCTTCTTTTCTAATCTACTGCTGTGGTCTGTTTTTGGCAGATGACCCTCTTGGCGATCCCAAGGTCTTCGGTGACCCTTATTGCACCCTCTTCGTTGGTCGCCTTTCACATCTGACTAACGAAGACACTCTTCGCAGGGTATTCTCCCATTTATTAATCCCTTTTTTTTGTTGTTTATTGATTTCTGATGAGAACTGAGGTGGAGATCCTTCGGAACTTGGGTGTTGGTCTATGTGGCTTGATGTGAGAATTTCATGGTGGGTGTTAGTGGCCATTAGGTTTTACTTTGTCTCAGATGATTCGTATATTAGTTTAAGCAGCCCTAGGAAGACGGATACTGAGGAGAAGAGGATTATCAGTTATATAGGTCAACTGGCAGCACGATTTGTTGGAGATGCAGCTAGAACTATAATTGAAACTAGAGGAGAGAGCTAGGGTTTTTTGTTCTTTGGATGCGATCGAAGTTAAAGAAAAAGGGAGCTCTTCAACTGGATTTTCATAGGCTCAGGATTGCTGCAATGTAGAATTGATTGCTGATAATATTTCGCCAGAAGGAAAATGTTGTGAGCGTAACTCCTAGGTGGGAATATGGACAGGTCTGGTTGGTTACTTGAAGCATTTGGGATTTTTTGTCCAACTCACATTAAAAGACCAGTGGGAATGGAGAAAGTAGAGGGGGAAAGAAAATATAAAGGAAGGAGGGAGTATTTCCTCGATAAAGTTTGATAGAGATGAGACTTTAGTGGCCCTGATAGGGCAATTTTTCCCTTACAACAAAAGTTGTTTGTTGGAACGAACATTTGAGGGTTGCTGGTGGTTGCCTGATGGCTGGACAGTCAGCAACCAATGGTCATGTGTATGGCCACGGTCACTATAAAGGTCCCATCTCGAGGTTAAGTGTACTTTGTCAACTTCGAGGTTTGGCTTCAAAATAAGAGAGTTACGTCTGAGTTACACTTGGAGATTGAAGTGTTCTTAGAAGAGAGGTGGTGTAAACCAAGTGACTTATTGCTTGATAAAAACATGCCTGTTATAGCCTAAAGCTAGCCATTTAAACTAAGGATAACTGAAAACCGTAACTGTCTTATCAAATAAATTAAATAAATTTCTTTTTTTCAAAAAAAAAGAAAAAAAAAGGAGGAAACAAAAGAATTTATCAAAGTAAACAACCAACCTTTTAAAGCTTAACAAATCTACCTTTTACAGCCTAAATCTAAAGCTAGCTACTTAAACTAAAAGCATAACTCAAAACCAGAACTGACTTATCAAATAAACAGCAAATTGCTTGTAGCTTCATTAACTAAGCTCTAACAGCTATTTCCTAAAACTGTAAATAATAGAGATTACATCACGAGGACTGTGGAGAAAAGCATCTATTGTCTACACCTTTTTAAATTTTGACTAGAAAAGAATTGAGCTGAGCGTACAAGAAGCTTTCTCAAGCTCTGGATTCTCAAGAGCTTGCTTGCCTTATTTATTTACTTGCACCGTTGCATTTGATATTTCATTTATAATTTACAGCTTTTCTTTTTATTTCCCTTTGTACATCTCATCAGCTGAAAAAGGAATTTCATCTCTCAGGCTATGAGCAAGTATGGTCAGGTTAAGAATCTACGCTTAGTCAGACACATTGGTGATTTCCTTATCTAGTTCTCATTTTATCTTTTATTTGGCTTGAAGGATTTCCTGATTAGTGATTAGGGTGCCCAAAAATTCTAGTTATATTTCCAATATTTGGGATATTAATACTATAAAACATGTTTTACGTTTAAGAGACTACTCTGTTCATAGAAGTTTAACGGATGGAAGAGACAACGATGTTTCTTACCAAATCTGCATGATATTTTACAGTAACGGGTTCTTCACGTGGTTATGCCTTTGTTGAATATGGAACTGAAAAAGAGATGCGACGTGCATATAAGGTAGTACAACTTCTTGAAGCTTTTAATTTCACCTGAGCTTATACTTGTGTTCTTGTTTTTGGTTTAAATATTTATTTATATATTTTGCTGTACGGTTCCTAATAGTAAACAAATTTGTGTGGGATGTGATGTTATTTTGCATTCTCCTTCTAGGTTACTAGGTTTCTTAATTAGCTATTGATTCTTTGGAAGCTCTTGGTAGAGCGATTCTTGTTGCTTGTCCTACCTTTACATTATCTCTTATCATTCATGGAATTTCTCGGTTCTTATGATTAATTTGTTAAAAAAAGGCATCCAATCATTTCATTTTTGAGTGAGAGTACATTAATAAGTTTGTTTTGATGGTGAATTATATTGATTGATATTAAGTTCCTTTATTCATCAGGATGCTCATCATTCGATGATAGATGATTGCGAAATTATAGTTGATTACAATCGACAACGGCTAATGTCTGGATGGATTCCACGGAGATTAGGTAAGTGGAAGTCTTGTAGTTTCACATATAGTACCCCCTACTTAAGTCTATTTGATTTTATCTGTGCTGATTGTAATAGGAGGGGGTCTTGGGGGTAAGAAGGAATCTGGACAACTTCGATTTGGAGGAAGAGAAAGACCATTTCGAGCTCCATTGTATGCTGTACTTCCCTCATTATGTATGCTGGTTGGTTATGATTGGGTGGTTATTAGATTCCTACTTTCCTTTTGCATGGATTTTAGTTCTGCTTCCTGGGTTCTCTTTTGTTGTGCCAAAGAATGTTTTGTTGGCATATAACTATGGTTTGGTCTGAACGAACTTCATACTCATCCTCACCCAACTTGTCGTTACTTAATTGTATTTCCATTAGGAGGAAGTAGTACACCTTGAACTTGGATACACTATGGTTGAAAGTTTTCATCTTATGTTTTAACCCTGCCCCTCAAATATTTTTTTCCTTTTGAGCTAAGTTACCTGTTGAATCATAGTTCTTGATAATGTGATCACTCCATGCGTTCTTCCAAAATCTTGTTTCTTTGCTTCCTTTTTTTTTATTATTTTATTATTTTTTATCTTGCTTTAAAGAATTGCTGCAGATCTTCAGAAATAAAGTTATAGGGGACGTATAATTACTCTTTTCAGTCTAACCATTCCTTTCATTGTGTTAAAGACTATAGCCCTCGCGGGAAACAGTTATAGCATTTCCAGTCCAAAGAGATTCAATTTCTACATGGAATTGTTACAAGTCTTTTTTTCAAGTAATTTCAAATTCTTCCGTTGCATAGTTTTTAACACCTAACTCCCAATTTCTTTGACATTAGACAATGGTCATTGTTATCAGCGAGTTTCGTGGAAATCAGAAGTTATCTTGATAAATACTGCCAAAACTCACCATTGAGGAGCTAGTTAAGTACTGCTTCCAACGGTTGCTCCTAAAGTAGCTAGGTCAGAAATTAAAAGTAATCCCTGTTCACTTGACTTTGAGCTACAATTCCTCTCTATAATTTCCCAGCCCAATTATTAATCTGCGAATTCCTGTTATTCTCCAAGCTTATAGCGAGTACTTCAATGATAAATGTGGCTTCTTTTATTTTTTATGCTTTTGTTTGCTTATTCAGGGCAGGTGTTTGATCTGGATTTCTTAATCAGATTATTCCATTGTCCTTTTGCGTGCATTTATGTCATTCATTGACTCAACTTCTCTAATTCATACCCTTTTGAGCAGACGGCCGATCCCTTATGACGATTTGAAAAGGCTTGGCGTTACTCCTCCTCCCGAAGGAAGATACATGCCCCGGTTTCAGGTATTTTTTCACAAATATTATTGATCTAACTGATAAAACTAGAAGCTTTATAATCTTTGTCTCAATTTAATAGTAGGAACGTCTTTGATGTACATACATGATATATCTAGAACCTCAAAGGGTGTTTGGTCCACTGACTTCATAAGTTGGTGTTAAATAATTCAACTTCAATAGTGTTTACTACTGAAGTTTGTAAATTTATCGCGTAACTTCATATTCCCTTCTTTCTCTATTTTGCACATTTATCGAGGAATACCATTTTACAACTCTGCAACCCAAACATAGACTTCTTAACTCCAATATATTAACTCCAAATTTCATAACTCAGCTCAGCGCCCCAAACACTTCTTTTAATGTGATCTCATAATGTCATTCTTCTGCTCTTCCACTTGGTATTTTGTAATGCAATTTAGTAGTAGGAACGTCTATGATTTTCATACATATTGTAGAACCTTAGTGTGTTTTTGCAGTGCATTCTTCTGCTCTTCCACTTGATATTTTATAATACAATGGACGATCACTTGACTTGAACTGAGGTCTGTATACTGTTACACAAGAAGTAATATTCTTTTTTGTTGGTTTTAGGTACCTTCTCCTCCCAGAAGAGAAACAGATTCTGTACTTAGGGAAGAAGGGTCCACTAAGAATGATTCTACGGATAAGGATGGATACAGTCAAAGAAATAGTTCTATAGATGAAGATGATTGGTCTCATACGAGGGGCTCCAATGACTACAGAGGGGGGCCCTCGCACAAGGGAAGCTACGAAAAGATGAAACATGAATCTAGGAGGGCCTCAAACGACAGGGATGATTATTCCTCCCACATGAGATTTTCTGAGAAGGAAGATTATTATCAGAGGAGATCTGCTGAGAAGGAAGATCTTTATCAGAGGAGCTCTTCAGACAAGGATCGATCTTGCAGAAGAGATTCCAATGATAGAGATGATCGCTCACGGAAGCGTCACAAATCTCATAGATAGGGACTCTATTCATTACCCATCTTGATATGAATGGAGCCATCTTATTCATGTGTCTAAAATCACAACAAAATGGAACGGCATCAAAGACACTCAACTATTGAGCTTCATTGATGCCACTCAACTATTGAGCTTCATTTATGACGAACAAAAGTTAAACCCAAGTTAAATTAAATGAAGGCAAGTAACATTGTAATAAAAGACTTCAATCTCATATTTATGATTCATCTGTGTTTTTTAGGTTTGGAGTAAGTGCGTATTATGGCATTCATGTACTTGGAACTTGGAAGTGATGTTACGACTCTTCAGTTGATATTAGGTTACTTTTAGGATCTCTTTGGAGGTTATATATAGTTAATTCCCATGTAAATTGAGACTTGGAAAAGGTAGTAAAATGAAACCAACCTATGAGCTTTCTAGAGCTAGGTTTTTTTTTTTA

mRNA sequence

AAAACTCCTTTTCTTTCTCCTTCTTCGACTCTCTTATAATTTATTTCCTGACATTCGTGTCTGGGATGAACTGATGGGCAATTTTCTTTTCTGGAGGGAAACGGGAAGTGTGCTTCGTACGCCATGAGCGGGAGCAACGTAAACAAGGTCTTCTACGCCGATAACTACCATCCCATTCAAGCCGGCAGCATCGACGGCACCGATATTCTTCCCCACGACAACGCCGTCTACCGAGCTTTGCTCTGTTCCTCTGCTGGCCTCTATGACCCTCTTGGCGATCCCAAGGTCTTCGGTGACCCTTATTGCACCCTCTTCGTTGGTCGCCTTTCACATCTGACTAACGAAGACACTCTTCGCAGGTCAGCAACCAATGGTCATGTGTATGGCCACGGTCACTATAAAGGTCCCATCTCGAGGTTAAGTGTACTTTGTCAACTTCGAGTAACGGGTTCTTCACGTGGTTATGCCTTTGTTGAATATGGAACTGAAAAAGAGATGCGACGTGCATATAAGGATGCTCATCATTCGATGATAGATGATTGCGAAATTATAGTTGATTACAATCGACAACGGCTAATGTCTGGATGGATTCCACGGAGATTAGGAGGGGGTCTTGGGGGTAAGAAGGAATCTGGACAACTTCGATTTGGAGGAAGAGAAAGACCATTTCGAGCTCCATTACGGCCGATCCCTTATGACGATTTGAAAAGGCTTGGCGTTACTCCTCCTCCCGAAGGAAGATACATGCCCCGGTTTCAGGTACCTTCTCCTCCCAGAAGAGAAACAGATTCTGTACTTAGGGAAGAAGGGTCCACTAAGAATGATTCTACGGATAAGGATGGATACAGTCAAAGAAATAGTTCTATAGATGAAGATGATTGGTCTCATACGAGGGGCTCCAATGACTACAGAGGGGGGCCCTCGCACAAGGGAAGCTACGAAAAGATGAAACATGAATCTAGGAGGGCCTCAAACGACAGGGATGATTATTCCTCCCACATGAGATTTTCTGAGAAGGAAGATTATTATCAGAGGAGATCTGCTGAGAAGGAAGATCTTTATCAGAGGAGCTCTTCAGACAAGGATCGATCTTGCAGAAGAGATTCCAATGATAGAGATGATCGCTCACGGAAGCGTCACAAATCTCATAGATAGGGACTCTATTCATTACCCATCTTGATATGAATGGAGCCATCTTATTCATGTGTCTAAAATCACAACAAAATGGAACGGCATCAAAGACACTCAACTATTGAGCTTCATTGATGCCACTCAACTATTGAGCTTCATTTATGACGAACAAAAGTTAAACCCAAGTTAAATTAAATGAAGGCAAGTAACATTGTAATAAAAGACTTCAATCTCATATTTATGATTCATCTGTGTTTTTTAGGTTTGGAGTAAGTGCGTATTATGGCATTCATGTACTTGGAACTTGGAAGTGATGTTACGACTCTTCAGTTGATATTAGGTTACTTTTAGGATCTCTTTGGAGGTTATATATAGTTAATTCCCATGTAAATTGAGACTTGGAAAAGGTAGTAAAATGAAACCAACCTATGAGCTTTCTAGAGCTAGGTTTTTTTTTTTA

Coding sequence (CDS)

ATGAGCGGGAGCAACGTAAACAAGGTCTTCTACGCCGATAACTACCATCCCATTCAAGCCGGCAGCATCGACGGCACCGATATTCTTCCCCACGACAACGCCGTCTACCGAGCTTTGCTCTGTTCCTCTGCTGGCCTCTATGACCCTCTTGGCGATCCCAAGGTCTTCGGTGACCCTTATTGCACCCTCTTCGTTGGTCGCCTTTCACATCTGACTAACGAAGACACTCTTCGCAGGTCAGCAACCAATGGTCATGTGTATGGCCACGGTCACTATAAAGGTCCCATCTCGAGGTTAAGTGTACTTTGTCAACTTCGAGTAACGGGTTCTTCACGTGGTTATGCCTTTGTTGAATATGGAACTGAAAAAGAGATGCGACGTGCATATAAGGATGCTCATCATTCGATGATAGATGATTGCGAAATTATAGTTGATTACAATCGACAACGGCTAATGTCTGGATGGATTCCACGGAGATTAGGAGGGGGTCTTGGGGGTAAGAAGGAATCTGGACAACTTCGATTTGGAGGAAGAGAAAGACCATTTCGAGCTCCATTACGGCCGATCCCTTATGACGATTTGAAAAGGCTTGGCGTTACTCCTCCTCCCGAAGGAAGATACATGCCCCGGTTTCAGGTACCTTCTCCTCCCAGAAGAGAAACAGATTCTGTACTTAGGGAAGAAGGGTCCACTAAGAATGATTCTACGGATAAGGATGGATACAGTCAAAGAAATAGTTCTATAGATGAAGATGATTGGTCTCATACGAGGGGCTCCAATGACTACAGAGGGGGGCCCTCGCACAAGGGAAGCTACGAAAAGATGAAACATGAATCTAGGAGGGCCTCAAACGACAGGGATGATTATTCCTCCCACATGAGATTTTCTGAGAAGGAAGATTATTATCAGAGGAGATCTGCTGAGAAGGAAGATCTTTATCAGAGGAGCTCTTCAGACAAGGATCGATCTTGCAGAAGAGATTCCAATGATAGAGATGATCGCTCACGGAAGCGTCACAAATCTCATAGATAG

Protein sequence

MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGTEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDGYSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEKEDYYQRRSAEKEDLYQRSSSDKDRSCRRDSNDRDDRSRKRHKSHR

Homology

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BLAST of Lsi05G013490 vs. Swiss-Prot
Match: U1135_ARATH (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.3e-86
Identity = 191/340 (56.18%), Postives = 228/340 (67.06%), Query Frame = 1


Query: 3   GSNV-NKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYC 62
           G+NV NKVFYA +YHPIQAGSIDGTD+ PHDN V RALLC +AGLYDP GD K  GDPYC
Sbjct: 5   GNNVVNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYC 64

Query: 63  TLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGT 122
           TLFVGRLSH T EDTLR   +           G I  L ++  + VTG+SRGY FVEY T
Sbjct: 65  TLFVGRLSHHTTEDTLREVMSK---------YGRIKNLRLVRHI-VTGASRGYGFVEYET 124

Query: 123 EKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERP 182
           EKEM RAY+DAHHS+ID  EIIVDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGR+RP
Sbjct: 125 EKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRP 184

Query: 183 FRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDGY 242
           FRAPLRPIP++DLK+LG+  PPEGRYM R Q+PSPPRR+     REE            Y
Sbjct: 185 FRAPLRPIPHEDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREE-----------EY 244

Query: 243 SQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHES-RRASNDRDDYSSHMRFSEKED 302
            +  SS++ ++    R S   R   SH+ S     H S RR S DR++ S     S++++
Sbjct: 245 YREKSSVEREEEFKERSS--LRSYHSHRSSAH--THSSHRRRSKDREECSREESRSDRKE 304

Query: 303 YYQRRSAEKEDLYQRSSSDKDRSCRRDSNDRDDRSRKRHK 341
               R+   ED Y  +  +   S +R     +DRSRKRHK
Sbjct: 305 ----RARGMEDRYGDNKGEVSGS-KRSKRSEEDRSRKRHK 314

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BLAST of Lsi05G013490 vs. Swiss-Prot
Match: U1SBP_HUMAN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.0e-42
Identity = 98/188 (52.13%), Postives = 121/188 (64.36%), Query Frame = 1


Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVIGDPLLTLFVARLNLQ 67

Query: 72  TNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGTEKEMRRAYKD 131
           T ED L+   +           G I RL ++  L VTG S+GYAF+EY  E+ + +AY+D
Sbjct: 68  TKEDKLKEVFSR---------YGDIRRLRLVRDL-VTGFSKGYAFIEYKEERAVIKAYRD 127

Query: 132 AHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIP 191
           A   +ID  EI VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+ 
Sbjct: 128 ADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVV 179

Query: 192 YDDLKRLG 199
            +DL R G
Sbjct: 188 KNDLYREG 179

[Close]

BLAST of Lsi05G013490 vs. Swiss-Prot
Match: U1SBP_MOUSE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.2e-40
Identity = 110/254 (43.31%), Postives = 141/254 (55.51%), Query Frame = 1


Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNLQ 67

Query: 72  TNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGTEKEMRRAYKD 131
           T E+ L+   +           G I RL ++  L VTG S+GYAF+EY  E+ + +AY+D
Sbjct: 68  TKEEKLKEVFSR---------YGDIRRLRLVRDL-VTGFSKGYAFIEYKEERALMKAYRD 127

Query: 132 AHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIP 191
           A   +ID  EI VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+ 
Sbjct: 128 ADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVV 187

Query: 192 YDDLKRLGVTPPPE-GRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDGYSQRNSSID 251
            ++  R G     E  R   R   P P  R+ D      G  K+       + +R     
Sbjct: 188 KNEPHREGKRERRERSRSRDRHWDPRPRERDHD-----RGREKH-------WQERARVWP 233

Query: 252 EDDWSHTRGSNDYR 264
           E+DW   R   + R
Sbjct: 248 ENDWEREREFREER 233

[Close]

BLAST of Lsi05G013490 vs. Swiss-Prot
Match: U1SBP_RAT (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-39
Identity = 113/265 (42.64%), Postives = 142/265 (53.58%), Query Frame = 1


Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNSQ 67

Query: 72  TNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGTEKEMRRAYKD 131
           T E+ L+   +           G I RL ++  L VTG S+GYAF+EY  E+ + +AY+D
Sbjct: 68  TKEEKLKEVFSR---------YGDIRRLRLVRDL-VTGFSKGYAFIEYKEERALLKAYRD 127

Query: 132 AHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIP 191
           A   +ID  EI VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+ 
Sbjct: 128 ADGLVIDQHEIFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVV 187

Query: 192 YDDLKRLGVTPPPE-GRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDGYSQRNSSID 251
            ++  R G     E  R   R   P P  R+ D      G  K+       +  R     
Sbjct: 188 KNEPHREGKRERRERSRSRDRHWDPRPRERDHD-----RGREKH-------WQDRARVWP 244

Query: 252 EDDWSHTRGSNDYRGGPSHKGSYEK 275
           E+DW   R   D R     K    K
Sbjct: 248 ENDWEREREFRDERAKTRDKRDRSK 244

[Close]

BLAST of Lsi05G013490 vs. Swiss-Prot
Match: U1SBP_BOVIN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus GN=SNRNP35 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-39
Identity = 110/253 (43.48%), Postives = 142/253 (56.13%), Query Frame = 1


Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YTP--NKGVTGDPLLTLFVARLNLQ 67

Query: 72  TNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGTEKEMRRAYKD 131
           T E+ L+   +           G I RL ++  L VTG S+GYAF+EY  E+ + +AY+D
Sbjct: 68  TKEEKLKEVFSR---------YGDIRRLRLVRDL-VTGFSKGYAFIEYKDERSLLKAYRD 127

Query: 132 AHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIP 191
           A   +ID  EI VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+ 
Sbjct: 128 ADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVV 187

Query: 192 YDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDGYSQRNSSIDE 251
            +D  R       EG+   R +  S   R  DS +R+      +   ++    R  +  E
Sbjct: 188 KNDQFR-------EGKRERRERSRS-RERHWDSRMRDHHDRGREKRWQEREPAR--AWPE 234

Query: 252 DDWSHTRGSNDYR 264
            DW   R   D R
Sbjct: 248 GDWERERDFRDDR 234

[Close]

BLAST of Lsi05G013490 vs. TrEMBL
Match: A0A061EQ81_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_021554 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 2.8e-99
Identity = 208/346 (60.12%), Postives = 255/346 (73.70%), Query Frame = 1


Query: 1   MSGSN-VNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDP 60
           M GSN VN VFYA+ YHPIQAGSIDGTDILPHDNAVYRALLCS+A LYDPLGDPK+ GDP
Sbjct: 1   MGGSNNVNSVFYAETYHPIQAGSIDGTDILPHDNAVYRALLCSNASLYDPLGDPKLIGDP 60

Query: 61  YCTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEY 120
           Y T+FV RLSHLT E TL ++ +    YG       +  L ++  + VTG+SRGYAFVE+
Sbjct: 61  YHTIFVSRLSHLTTEHTLHKAMSK---YGR------VKNLRLVRHI-VTGASRGYAFVEF 120

Query: 121 GTEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRE 180
            TE+EMRRAYKDAHHS IDD E+IVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRE
Sbjct: 121 ETEREMRRAYKDAHHSFIDDSEVIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRE 180

Query: 181 RPFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKD 240
           RPFRAPLR IPY+DLK LG+ PPPEGRYM RFQVPSPPR+   SV +EE S K  S D++
Sbjct: 181 RPFRAPLRQIPYEDLKTLGIRPPPEGRYMSRFQVPSPPRKRRSSVEKEEYSHKRSSVDRE 240

Query: 241 GYSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEKE 300
            +SQR+SSI+ D    T G    R   S K +  + +H  R++S DR + S      E+E
Sbjct: 241 EFSQRSSSIERDGHKRTAGG---RQESSSKRNSVEEEHHHRKSSTDRSESSQKRTPIERE 300

Query: 301 DYYQRRS-AEKEDL-YQRSSSD-KDRSCRRDSNDRDDRSRKRHKSH 343
           D+  + S  ++E+L + RS+++  + S +R S D+++RS KRH+ H
Sbjct: 301 DHRHKCSFVDREELSHSRSTAEGGEISRKRTSKDKEERSSKRHRHH 333

[Close]

BLAST of Lsi05G013490 vs. TrEMBL
Match: D7U1M3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00080 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.4e-97
Identity = 202/356 (56.74%), Postives = 246/356 (69.10%), Query Frame = 1


Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGS  N VFYA++YHPIQAGSIDGTD LPHDNAVYRALLCSSAGLYDP GDPKV GDPY
Sbjct: 1   MSGSRANAVFYAESYHPIQAGSIDGTDTLPHDNAVYRALLCSSAGLYDPFGDPKVIGDPY 60

Query: 61  CTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYG 120
           CT+FVG L+HLT EDTL ++ +           G +  L ++  + VTG+S+GYAFVEY 
Sbjct: 61  CTVFVGHLNHLTTEDTLHKAMSKF---------GRVKSLRLVRHI-VTGASQGYAFVEYE 120

Query: 121 TEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER 180
           TE+EMRRAY+DAHHSMIDDCEIIVDYNRQ+LM GWIPRRLGGG+GGKKESGQLRFGGRER
Sbjct: 121 TEREMRRAYEDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGIGGKKESGQLRFGGRER 180

Query: 181 PFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDG 240
           PFRAPLRPIP DDLKRLG+ PPPEGRYM RFQVP PPRR+  ++ REE S +  S D++ 
Sbjct: 181 PFRAPLRPIPLDDLKRLGIPPPPEGRYMSRFQVPPPPRRKRSNMDREEPSHRGSSIDRED 240

Query: 241 YSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEKED 300
              +  SI+ ++ SH   S D       + S +K      R+S DR++       S++E 
Sbjct: 241 RYHKGGSIEGEEHSHEGSSVDREEHSHRRSSIDK------RSSIDREERFHKRSSSDREV 300

Query: 301 YYQRRSA----EKEDL----------YQRSSSDKDRSCRRDSNDRDDRSRKRHKSH 343
              +RS+    E+ D           + RSS D +    + S DR+  S KRH+ +
Sbjct: 301 RSHKRSSTDLVERSDKRSFIHGEERFHSRSSMDWEEHSHKSSMDRERHSHKRHRQY 340

[Close]

BLAST of Lsi05G013490 vs. TrEMBL
Match: A0A0B0MVP6_GOSAR (U11/U12 small nuclear ribonucleoprotein 35 kDa OS=Gossypium arboreum GN=F383_29002 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.5e-97
Identity = 197/341 (57.77%), Postives = 252/341 (73.90%), Query Frame = 1


Query: 4   SNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTL 63
           SN+N VFYA++YHPIQAGSIDGTDILPHDNAVYRALLCS+A LYDP GDPK+ GDPYCT+
Sbjct: 3   SNINSVFYAESYHPIQAGSIDGTDILPHDNAVYRALLCSNAALYDPTGDPKIIGDPYCTV 62

Query: 64  FVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGTEK 123
           FVGRLSHLT E TL ++ +    YG       I  L ++  + VTG+SR +AFVE+ TE+
Sbjct: 63  FVGRLSHLTTEPTLHKAMSK---YGR------IKNLRLVRHI-VTGASRRFAFVEFETER 122

Query: 124 EMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFR 183
           EMRRAY+DAHH++IDD EIIVDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGRERPFR
Sbjct: 123 EMRRAYQDAHHAIIDDAEIIVDYNRQKLMPGWIPRRLGGGLGGRKESGQLRFGGRERPFR 182

Query: 184 APLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDGYSQ 243
           APL+PIPY+DLK+LG+TPPPEGRYM RFQVPSPPR+    V +EE S K  S D++  SQ
Sbjct: 183 APLQPIPYEDLKKLGITPPPEGRYMSRFQVPSPPRKPRKLVEKEEYSYKRSSVDREELSQ 242

Query: 244 RNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEKEDYYQ 303
           R+SS++ D+   T G    R   S K SY + + +  ++S DR + S +    E +  Y+
Sbjct: 243 RSSSMERDEHRRTVG----RKQDSRKRSYVEEESQYGKSSEDRPECSPNTTSIETDHDYK 302

Query: 304 RRSAEKEDLYQRSSSDK--DRSCRRDSNDRDDRSRKRHKSH 343
            R+ ++E+ Y   S+ +  + S +R S D+++   KRH+ +
Sbjct: 303 WRTLDREEHYHSRSNAEGGEISRKRSSRDKEELPSKRHRHY 329

[Close]

BLAST of Lsi05G013490 vs. TrEMBL
Match: A0A067L2Z0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23763 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.5e-97
Identity = 200/341 (58.65%), Postives = 244/341 (71.55%), Query Frame = 1


Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MS +NVN VFYAD YHPIQAGSIDGTDI+PHDNAVYRALLCSSAGLYDP GDPKV GDPY
Sbjct: 1   MSRANVNSVFYADTYHPIQAGSIDGTDIVPHDNAVYRALLCSSAGLYDPFGDPKVIGDPY 60

Query: 61  CTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYG 120
           CT+FVGRLSH T E++LR++ +    YG       +  L ++  + VTG+SRGYAFVEY 
Sbjct: 61  CTVFVGRLSHCTTEESLRKAMSK---YGR------VKNLRLVRDI-VTGASRGYAFVEYE 120

Query: 121 TEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER 180
           TE+EMRR+YKDAHHS IDD EI+VDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGRER
Sbjct: 121 TEREMRRSYKDAHHSYIDDSEIMVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRER 180

Query: 181 PFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDG 240
           PFRAPL+ IP DDLKRLG+ PPPEGRYM  FQVPSPPRR   S+ REE S    S DK+ 
Sbjct: 181 PFRAPLQSIPLDDLKRLGIPPPPEGRYMSCFQVPSPPRRNRSSIDREESSRMRSSIDKEE 240

Query: 241 YSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEKED 300
           +S R+SS + ++  + R S       S + S E+ +   +  S D   +S      EKE 
Sbjct: 241 HSHRSSSAEREERYNKRSSRGKEEHTSKQRSKEREERYHKGRSLDSSGHSHKKISLEKEK 300

Query: 301 YYQRRS-AEKEDLYQRSSSDKDRSCRRDSNDRDDRSRKRHK 341
           ++++ S  ++E+   + SSD +      S DR + S KRH+
Sbjct: 301 HHEKSSPLDREETPYKRSSDLEAYPHTSSKDRKEGSHKRHR 331

[Close]

BLAST of Lsi05G013490 vs. TrEMBL
Match: M5XPC0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024322mg PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.3e-96
Identity = 204/346 (58.96%), Postives = 240/346 (69.36%), Query Frame = 1


Query: 1   MSGSNVN--KVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGD 60
           MSG NVN   VFYA+ YHP+QAGSIDGTDILPHDNAVYRA LCSSAGLYDPLGDPK+ GD
Sbjct: 1   MSGRNVNVNSVFYAEAYHPVQAGSIDGTDILPHDNAVYRAFLCSSAGLYDPLGDPKLIGD 60

Query: 61  PYCTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVE 120
           PYCTLFVG LSHLT E +LR++ +    YG       +  L ++  + VTG+SRGYAFVE
Sbjct: 61  PYCTLFVGHLSHLTTEQSLRKALSK---YGR------VKDLRLVRHI-VTGASRGYAFVE 120

Query: 121 YGTEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGR 180
           Y TE+EM+RAYK+AHHS IDD E+IVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGR
Sbjct: 121 YETEREMQRAYKEAHHSFIDDSEVIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGR 180

Query: 181 ERPFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDK 240
           ERPFRAPLR IPYDDL+RLG+ PPPEGRYM R+QVPSPPRR                   
Sbjct: 181 ERPFRAPLRSIPYDDLERLGIPPPPEGRYMSRYQVPSPPRR------------------- 240

Query: 241 DGYSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEK 300
                + +S+D ++  H R     RG  + K S  + +  S + S D +D+S        
Sbjct: 241 -----KRNSVDREEGIHKRSME--RGANTRKSSPVEKEERSHKRSMDPEDHS-------- 299

Query: 301 EDYYQRRSAEKEDLYQRSSSDK-DRSCRRDSNDRDDRSRKRHKSHR 344
              ++R S E E    RSS D+ +RS +R S DRDDRS KRHKSHR
Sbjct: 301 ---FKRSSVETEHHRNRSSIDRAERSHKRTSRDRDDRSHKRHKSHR 299

[Close]

BLAST of Lsi05G013490 vs. TAIR10
Match: AT2G43370.1 (AT2G43370.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 320.5 bits (820), Expect = 1.3e-87
Identity = 191/340 (56.18%), Postives = 228/340 (67.06%), Query Frame = 1


Query: 3   GSNV-NKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYC 62
           G+NV NKVFYA +YHPIQAGSIDGTD+ PHDN V RALLC +AGLYDP GD K  GDPYC
Sbjct: 5   GNNVVNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYC 64

Query: 63  TLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGT 122
           TLFVGRLSH T EDTLR   +           G I  L ++  + VTG+SRGY FVEY T
Sbjct: 65  TLFVGRLSHHTTEDTLREVMSK---------YGRIKNLRLVRHI-VTGASRGYGFVEYET 124

Query: 123 EKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERP 182
           EKEM RAY+DAHHS+ID  EIIVDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGR+RP
Sbjct: 125 EKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRP 184

Query: 183 FRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDGY 242
           FRAPLRPIP++DLK+LG+  PPEGRYM R Q+PSPPRR+     REE            Y
Sbjct: 185 FRAPLRPIPHEDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREE-----------EY 244

Query: 243 SQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHES-RRASNDRDDYSSHMRFSEKED 302
            +  SS++ ++    R S   R   SH+ S     H S RR S DR++ S     S++++
Sbjct: 245 YREKSSVEREEEFKERSS--LRSYHSHRSSAH--THSSHRRRSKDREECSREESRSDRKE 304

Query: 303 YYQRRSAEKEDLYQRSSSDKDRSCRRDSNDRDDRSRKRHK 341
               R+   ED Y  +  +   S +R     +DRSRKRHK
Sbjct: 305 ----RARGMEDRYGDNKGEVSGS-KRSKRSEEDRSRKRHK 314

[Close]

BLAST of Lsi05G013490 vs. TAIR10
Match: AT3G50670.1 (AT3G50670.1 U1 small nuclear ribonucleoprotein-70K)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-17
Identity = 87/297 (29.29%), Postives = 128/297 (43.10%), Query Frame = 1


Query: 47  YDPLGDPKVFGDPYCTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLR 106
           YDP  DP   GDPY TLFV RL++ ++E  ++R   +          GPI R+ ++   +
Sbjct: 124 YDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFES---------YGPIKRVHLVTD-Q 183

Query: 107 VTGSSRGYAFVEYGTEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGG 166
           +T   +GYAF+EY   ++M+ AYK A    ID   ++VD  R R +  W PRRLGGGLG 
Sbjct: 184 LTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGT 243

Query: 167 KKESGQLRFGGRERPFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLR 226
            +  G     G ++                      P+GR   + + PS PR E +   R
Sbjct: 244 SRVGGGEEIVGEQQ----------------------PQGR-TSQSEEPSRPREEREK-SR 303

Query: 227 EEGSTKNDSTDKDGYSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDR 286
           E+G  +  S +      R  S D             R    H+   +  +   R +  DR
Sbjct: 304 EKGKERERSRELSHEQPRERSRDRP-----------REDKHHRDRDQGGRDRDRDSRRDR 355

Query: 287 DDYSSHMRFSEKEDYYQRRSAEKEDLYQRSSSDKDRSCRRDSNDRD-DRSRKRHKSH 343
           D                 R+ ++ D   R   D+DR   R S D D DRSRK+ + +
Sbjct: 364 D-----------------RTRDRGD---RDRRDRDRGRDRTSRDHDRDRSRKKERDY 355

[Close]

BLAST of Lsi05G013490 vs. NCBI nr
Match: gi|659077142|ref|XP_008439055.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucumis melo])

HSP 1 Score: 570.9 bits (1470), Expect = 1.5e-159
Identity = 291/343 (84.84%), Postives = 305/343 (88.92%), Query Frame = 1


Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDP GDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYG 120
           CTLFVGRLSHLT EDTLRR+ +           G +  L ++  + VTGSSRGYAFVEY 
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSK---------YGQVKDLRLVRHI-VTGSSRGYAFVEYE 120

Query: 121 TEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER 180
           TEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER
Sbjct: 121 TEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER 180

Query: 181 PFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDG 240
           PFRAPLRPIPYDDLKRLG+TPPPEGRYM RFQ+PSPPRRETDS  REEGS KN+ T+KDG
Sbjct: 181 PFRAPLRPIPYDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTEKDG 240

Query: 241 YSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEKED 300
           ++ RNSSIDEDDWSHTRGSNDYRGG SHKG+ EKMKHESRR SNDRDDYS H RFS KED
Sbjct: 241 HNHRNSSIDEDDWSHTRGSNDYRGGHSHKGNNEKMKHESRRTSNDRDDYSPHKRFSGKED 300

Query: 301 YYQRRSAEKEDLYQRSSSDKDRSCRRDSNDRDDRSRKRHKSHR 344
           YYQRRSAEKEDLY+RSSSDKDRS RRDS DRDD SRK HKSHR
Sbjct: 301 YYQRRSAEKEDLYRRSSSDKDRSRRRDSKDRDDHSRKHHKSHR 333

[Close]

BLAST of Lsi05G013490 vs. NCBI nr
Match: gi|778679244|ref|XP_004147652.2| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucumis sativus])

HSP 1 Score: 564.3 bits (1453), Expect = 1.4e-157
Identity = 288/343 (83.97%), Postives = 303/343 (88.34%), Query Frame = 1


Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDIL HDNAVYRALLCSSAGLYDP GDPKVFGDPY
Sbjct: 18  MSGSNVNKVFYADNYHPIQAGSIDGTDILSHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 77

Query: 61  CTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYG 120
           CTLFVGRLSHLT EDTLRR+ +           G +  L ++  + VTGSSRGYAFVEY 
Sbjct: 78  CTLFVGRLSHLTTEDTLRRAMSK---------YGQVKNLRLVRHI-VTGSSRGYAFVEYE 137

Query: 121 TEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER 180
           TEKEM+RAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER
Sbjct: 138 TEKEMQRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER 197

Query: 181 PFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDG 240
           PFRAPLRPIPYDDLKRLG+TPPPEGRY  RFQ+PSPPRRETDS  REEGS KN+ T+KDG
Sbjct: 198 PFRAPLRPIPYDDLKRLGITPPPEGRYKSRFQIPSPPRRETDSERREEGSNKNEPTEKDG 257

Query: 241 YSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEKED 300
           +S RNSSIDEDDWSHTRGSNDYR G SHKG++EKMKHESRR SNDRDDYS H RFSEKED
Sbjct: 258 HSHRNSSIDEDDWSHTRGSNDYRVGHSHKGNHEKMKHESRRTSNDRDDYSPHKRFSEKED 317

Query: 301 YYQRRSAEKEDLYQRSSSDKDRSCRRDSNDRDDRSRKRHKSHR 344
           YYQ RSAEKEDLY+RSSSDKDRS RRDS DRDD SRK HKSHR
Sbjct: 318 YYQSRSAEKEDLYRRSSSDKDRSRRRDSKDRDDHSRKHHKSHR 350

[Close]

BLAST of Lsi05G013490 vs. NCBI nr
Match: gi|1009119161|ref|XP_015876230.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Ziziphus jujuba])

HSP 1 Score: 390.2 bits (1001), Expect = 3.7e-105
Identity = 213/344 (61.92%), Postives = 255/344 (74.13%), Query Frame = 1


Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSN+N VFYA +YHPIQAGSIDGTDILPHDNAVYRA LCSSAGLYDP GDPKV GDPY
Sbjct: 1   MSGSNINSVFYASSYHPIQAGSIDGTDILPHDNAVYRAHLCSSAGLYDPFGDPKVIGDPY 60

Query: 61  CTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYG 120
           CT+FVGRLSHLT E TL ++ +    YG       +  L ++  + VTG+SRGYAFVEY 
Sbjct: 61  CTVFVGRLSHLTTEHTLHKAMSK---YGR------VKNLRLVRHI-VTGASRGYAFVEYE 120

Query: 121 TEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRER 180
           TE+EM  AYKDAHHS+IDDCEIIVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRER
Sbjct: 121 TEREMLGAYKDAHHSIIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRER 180

Query: 181 PFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDG 240
           PFRAPLRPIPYDDLKRLG+ PPPEGRYM R+QVPSPPRRE  SV REEGS +  S +++ 
Sbjct: 181 PFRAPLRPIPYDDLKRLGIPPPPEGRYMSRYQVPSPPRRERSSVEREEGSCRRRSMERER 240

Query: 241 YSQRNSSIDEDDWSHTRGSNDY--RGGPSHKGSYEKM--KHESRRASNDRDDYSSHMRFS 300
           +++++SS+D ++ S  R S+    +   SH+ S EK   +H + R S DRDD S   +  
Sbjct: 241 HARKSSSVDREERSRKRRSSSSMDQEEHSHRTSIEKKEEQHYTERTSRDRDDRSYSRKRV 300

Query: 301 EKEDYYQRRSAEKEDLYQRSSSDKDRSCRRDSNDRDDRSRKRHK 341
           E+E++Y +R    E  +++S  D+DR          D S KR K
Sbjct: 301 EREEHYDKR----EHSHKKSHKDRDR----------DHSHKRRK 320

[Close]

BLAST of Lsi05G013490 vs. NCBI nr
Match: gi|702510612|ref|XP_010040668.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like [Eucalyptus grandis])

HSP 1 Score: 371.3 bits (952), Expect = 1.8e-99
Identity = 205/341 (60.12%), Postives = 249/341 (73.02%), Query Frame = 1


Query: 2   SGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYC 61
           S   +N VFYA++YHPIQAGSIDGTD+LPHDNAVYRA LCSSAGLYDP GDPK  GDPYC
Sbjct: 5   SSGRLNSVFYAESYHPIQAGSIDGTDVLPHDNAVYRAHLCSSAGLYDPFGDPKAVGDPYC 64

Query: 62  TLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEYGT 121
           TLFVGRLSH T+EDTLR++ +    YGH      +  L ++  + VTG+SRGYAFVEY T
Sbjct: 65  TLFVGRLSHFTSEDTLRKAMSK---YGH------VKNLRLVRHI-VTGASRGYAFVEYET 124

Query: 122 EKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERP 181
           E+EMRRAYKDAHHS IDD EIIVDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGRERP
Sbjct: 125 EREMRRAYKDAHHSFIDDSEIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRERP 184

Query: 182 FRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKDGY 241
           FRAPLRPIP DDLKRLG+ PPPEGRYM RF+VPSPPRR    + +EEGS ++ S +++ +
Sbjct: 185 FRAPLRPIPLDDLKRLGIPPPPEGRYMSRFEVPSPPRRGQGLLDKEEGSYRS-SGNREEH 244

Query: 242 SQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRD--DYSSHMRFSEKE 301
           + + +S D +D  H R  +D       K S E+ +H+ RR   DR+  +  S +   EK 
Sbjct: 245 THKRNSEDREDRVHGRSPDDTLDHSYDKSSKEEHRHDKRR-HKDREFSNRKSSVELEEKR 304

Query: 302 DYYQRRSAEKEDLYQRSSSDKDRSCRRDSNDRDDRSRKRHK 341
            Y  R S EKE+  + S   ++RSC+  S D D R +KR +
Sbjct: 305 HY--RSSVEKEETVRSSLDGEERSCKPSSIDDDGRVKKRSR 331

[Close]

BLAST of Lsi05G013490 vs. NCBI nr
Match: gi|590627704|ref|XP_007026514.1| (RNA-binding family protein [Theobroma cacao])

HSP 1 Score: 370.2 bits (949), Expect = 4.0e-99
Identity = 208/346 (60.12%), Postives = 255/346 (73.70%), Query Frame = 1


Query: 1   MSGSN-VNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDP 60
           M GSN VN VFYA+ YHPIQAGSIDGTDILPHDNAVYRALLCS+A LYDPLGDPK+ GDP
Sbjct: 1   MGGSNNVNSVFYAETYHPIQAGSIDGTDILPHDNAVYRALLCSNASLYDPLGDPKLIGDP 60

Query: 61  YCTLFVGRLSHLTNEDTLRRSATNGHVYGHGHYKGPISRLSVLCQLRVTGSSRGYAFVEY 120
           Y T+FV RLSHLT E TL ++ +    YG       +  L ++  + VTG+SRGYAFVE+
Sbjct: 61  YHTIFVSRLSHLTTEHTLHKAMSK---YGR------VKNLRLVRHI-VTGASRGYAFVEF 120

Query: 121 GTEKEMRRAYKDAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRE 180
            TE+EMRRAYKDAHHS IDD E+IVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRE
Sbjct: 121 ETEREMRRAYKDAHHSFIDDSEVIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRE 180

Query: 181 RPFRAPLRPIPYDDLKRLGVTPPPEGRYMPRFQVPSPPRRETDSVLREEGSTKNDSTDKD 240
           RPFRAPLR IPY+DLK LG+ PPPEGRYM RFQVPSPPR+   SV +EE S K  S D++
Sbjct: 181 RPFRAPLRQIPYEDLKTLGIRPPPEGRYMSRFQVPSPPRKRRSSVEKEEYSHKRSSVDRE 240

Query: 241 GYSQRNSSIDEDDWSHTRGSNDYRGGPSHKGSYEKMKHESRRASNDRDDYSSHMRFSEKE 300
            +SQR+SSI+ D    T G    R   S K +  + +H  R++S DR + S      E+E
Sbjct: 241 EFSQRSSSIERDGHKRTAGG---RQESSSKRNSVEEEHHHRKSSTDRSESSQKRTPIERE 300

Query: 301 DYYQRRS-AEKEDL-YQRSSSD-KDRSCRRDSNDRDDRSRKRHKSH 343
           D+  + S  ++E+L + RS+++  + S +R S D+++RS KRH+ H
Sbjct: 301 DHRHKCSFVDREELSHSRSTAEGGEISRKRTSKDKEERSSKRHRHH 333

The following BLAST results are available for this feature:

BLAST of Lsi05G013490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U1135_ARATH	2.3e-86	56.18	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana G...	[more]
U1SBP_HUMAN	2.0e-42	52.13	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP3...	[more]
U1SBP_MOUSE	7.2e-40	43.31	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus GN=Snrnp3...	[more]
U1SBP_RAT	1.2e-39	42.64	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus GN=S...	[more]
U1SBP_BOVIN	1.6e-39	43.48	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus GN=SNRNP35 ...	[more]

BLAST of Lsi05G013490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EQ81_THECC	2.8e-99	60.12	RNA-binding family protein OS=Theobroma cacao GN=TCM_021554 PE=4 SV=1	[more]
D7U1M3_VITVI	3.4e-97	56.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00080 PE=4 SV=...	[more]
A0A0B0MVP6_GOSAR	4.5e-97	57.77	U11/U12 small nuclear ribonucleoprotein 35 kDa OS=Gossypium arboreum GN=F383_290...	[more]
A0A067L2Z0_JATCU	4.5e-97	58.65	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23763 PE=4 SV=1	[more]
M5XPC0_PRUPE	1.3e-96	58.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024322mg PE=4 SV=1	[more]

BLAST of Lsi05G013490 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43370.1	1.3e-87	56.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G50670.1	1.1e-17	29.29	U1 small nuclear ribonucleoprotein-70K	[more]

BLAST of Lsi05G013490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077142\|ref\|XP_008439055.1\|	1.5e-159	84.84	PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucumis melo]	[more]
gi\|778679244\|ref\|XP_004147652.2\|	1.4e-157	83.97	PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucumis sativ...	[more]
gi\|1009119161\|ref\|XP_015876230.1\|	3.7e-105	61.92	PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Ziziphus juju...	[more]
gi\|702510612\|ref\|XP_010040668.1\|	1.8e-99	60.12	PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like [Eucalypt...	[more]
gi\|590627704\|ref\|XP_007026514.1\|	4.0e-99	60.12	RNA-binding family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0009987	cellular process
biological_process	GO:0044699	single-organism process
biological_process	GO:0008150	biological_process
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G013490.1	Lsi05G013490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 63..142 score: 8.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 62..145 score: 2.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 61..149 score: 12
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 49..163 score: 8.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 49..177 score: 5.57
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 9..343 score: 2.0E
None	No IPR available	PANTHER	PTHR13952:SF6	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN	coord: 9..343 score: 2.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G013490	CSPI03G15650	Wild cucumber (PI 183967)	cpilsiB206
Lsi05G013490	Cucsa.251870	Cucumber (Gy14) v1	cgylsiB422
Lsi05G013490	Cla021867	Watermelon (97103) v1	lsiwmB366
Lsi05G013490	MELO3C006785	Melon (DHL92) v3.5.1	lsimeB376
Lsi05G013490	ClCG05G007160	Watermelon (Charleston Gray)	lsiwcgB336
Lsi05G013490	MELO3C006785.2	Melon (DHL92) v3.6.1	lsimedB393
Lsi05G013490	Cla97C05G088910	Watermelon (97103) v2	lsiwmbB334
Lsi05G013490	Bhi01G000867	Wax gourd	lsiwgoB444
Lsi05G013490	CsGy3G015740	Cucumber (Gy14) v2	cgyblsiB191
Lsi05G013490	CsaV3_3G015860	Cucumber (Chinese Long) v3	cuclsiB226

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G013490	Cucumber (Chinese Long) v2	culsiB208
Lsi05G013490	Cucumber (Chinese Long) v2	culsiB210
Lsi05G013490	Melon (DHL92) v3.5.1	lsimeB379
Lsi05G013490	Cucumber (Gy14) v2	cgyblsiB197
Lsi05G013490	Melon (DHL92) v3.6.1	lsimedB397
Lsi05G013490	Silver-seed gourd	carlsiB633
Lsi05G013490	Silver-seed gourd	carlsiB951
Lsi05G013490	Cucumber (Chinese Long) v3	cuclsiB229
Lsi05G013490	Cucumber (Chinese Long) v3	cuclsiB245
Lsi05G013490	Cucumber (Gy14) v1	cgylsiB416
Lsi05G013490	Cucurbita maxima (Rimu)	cmalsiB246
Lsi05G013490	Cucurbita maxima (Rimu)	cmalsiB765
Lsi05G013490	Cucurbita moschata (Rifu)	cmolsiB234
Lsi05G013490	Cucurbita moschata (Rifu)	cmolsiB759
Lsi05G013490	Cucurbita pepo (Zucchini)	cpelsiB507
Lsi05G013490	Cucurbita pepo (Zucchini)	cpelsiB715
Lsi05G013490	Wild cucumber (PI 183967)	cpilsiB208