Cla97C05G088910 (gene) Watermelon (97103) v2

Overview
NameCla97C05G088910
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 35 kDa protein-like
LocationCla97Chr05 : 7056227 .. 7061256 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGGAGCAACGTAAACAAGGTCTTCTACGCCGATAACTACCATCCCATTCAGGCCGGCAGCATCGACGGCACCGACATTCTTCCACACGACAACGCCGTCTACCGAGCTTTGCTCTGCTCCTCTGCTGGCCTCTGTAATTCTCTCCTCTCTAATTTTTCGACGCCCATTTTGTACTTGTTGATGTTCTTCATCGTCTTCTGTTCTAATCTACTGCTGTGGTCTGTTTTTGGCAGATGATCCTCTTGGCGATCCCAAGGTCTTCGGTGACCCTTATTGCACTCTCTTCGTTGGTCGCCTTTCACATCTGACTACCGAAGACACTCTTCGCAGGGTATTCTCCATTCATTAATCCGTTTTATTTTTGTTGTTTATTGATTTCTGATAAGAATTGAGATGAACTAATTTATCCTTCGGAACTTGGGTGTTGGTCGATGTGGCTTGATGTGAGAATTTCATGGTGGGTGTTAATGGCCATTATGTACTGATTGTTATTACTACTCTACTGTTTTATTTTGGCTCGGATGATTTCTAAATTAGTTTATGCATCCCTAGGAAGATGGACACTGAGAGAGAGGAGGATTATCAGTTATGTAGGTCAACTGGTAGCACGATTTGTTGGAGCTGCAGCTAAAACTAGACGAGAGAACTATGGGTTTTTTTTTCTTTGGATGCAATCGAAATTAAAGATAAAGGGAACTTTTCAACTGAATTTTCGTAGGATCAGGATTGTTGCATTGTAGAATCGATTGCTAATAGTATTCCGCCAGAAGGAAAGTGTTGTGAGCGTAGCTCCTAGATGGGAATATGGACAGGTCTGGTTGGTTACTCGAAGCATTTACGATTTTATCCCAACTCCTATTAAAAGACCAGAGGGAATGAAGAAAGTCGAGGGGGGAAGAAAGTATAAAGTAAAGAGGAAGTTGAAGAATTTTATTTCCTTGATAATGTTTGATAGAGAAGATACTTTAGTAGCCTTGATAGGGAAATAAGTTGTTCGTTGGAATGAACATTTGAGGGTTGCTGGTGGTTGCCTGATGACTGGACAATCGGCAACCAACTGCTCATGTGTATGGCCATGGTAACTGTAAAGGTCCTATCTCGAGGTTAAGTGTACTTTGTCAACTTTATGTAAGGTAAAGTTTTGGCTTCAAAATAGGAGTTAAGTCTGAGTTAAACTTGGAGATGGAAGTCTTTTTAGAAGAGAGGTGGTGTAAACCAAGTGAGTGACTTATTGATTGATAAAAGATATTGAAATTTTGAGGTTGGTTGGCAAGATGAAGGTTGGCTGGCAATCAAGTCGTTTGACCTTTTGATTAAGGTGTTCTCATTATGGTCTGGTATTGGTGAAGTAATCCTTCCTAACAAAGAATTGGATTCTTGATAAGGCGCTTTTGTATTTCCTGCCTCGATGTCATGCTTGGGGAATGAAGTTTCAAGATCCACCCACAGTGTACATTCTTTCTTCTTGGGTCTTCTTGCCTCTCGAAGGGATGGTTCTTGCCTTCGGGTGGAGGGTTTGTAACATTTTGTTCTTCATGGTTTTGTTGTTGATCCAACCTCAGTTAGATTCTCTAGTTGTGCGTCCATGGCAGCTATTGGTTGGATTCCCGCCAAGGAACTCTTCAACCAACAACAGGTGCTGGGTTTTCTACCCTTTACAACCTAAACCTAAAGCGAGCTACTTAAACTAAAAGCATAACCCAAAACCAGACTAGAACCGACTTTTCAAATAAACAGCAAACTGTTTGTAGCTTAATAAATAAAGCTCTAACAGCTATTTCCTCAAACTGTAAATATTAGATTACATAGGACTGAGGAGAAGAGCAGCTCTTGTCTACACCTTTTAAAATCTCTTACGAAAGGAATTGAGCTGAGCGTACAAGAAGCTTTCTCAAGCTCTGGATTCTCAAAAGCTTGCTTGCCTTTCTTAATTACCTACACTGTTGCGGTTGATCATTCATTTATAATTTACAGCTTTTCTTTTTATTTCCCTTTCTACAACTTTTCAGCTGAAAAAGGAATTTCATCTCTCAGGCTATGAGCAAGTATGGTCAGGTTAAGAACCTACGCTTAGTCAGACACATTGGTGATTTCCTTATCCTTATCTAGTTCTCATTTTATCTTTTATTTGGCTTAAAGGGTTTCCTGATTAGTGAATAGGTGCCCAAAAATTCTAATCATATTTCCAATATTTGGGATATTCATACTATAAACATGTTTTACGTTCAACAGGTTACTCTGTTCATAGAAGTTCAACAGATGGAAGAGACAATAATGTTTCTTACCAAATCTACATGATATTTTGCAGTAACTGGTTCTTCACGTGGTTATGCTTTTGTTGAGTATGAAACTGAAAAAGAGATGCGACGTGCATATGAGGTGATACAAGCTCTTGAATCCTTTAATTTCACCTGAGCTTATTCTTTTGTTCCTGTTTTTGGTTTACATATTTGTTTATTTATTTTGATTTGAATGTTTTCTAGCATTCTCTTCCTAGGATACTAGTTTTTTCTTAATTAACTATTGATTCTTTGGAAGGTCTTGGTAGAGCAATTCCTGTTGCTTGCCCTACCTTTTACTATAACTCTTATCATTCATGGGATTTCTCGGTTCTTATAATTAATTAGTTAAAAAGACCATCCAATCATTTGATTTTTCAGTGAGAAATACATTAATAAATTTGTTTTTGATGTTAAATGATATTGATTGATATTAAGTTCCTTTATTCATCAGGATGCTCATCATTTGATGATAGATGATTCCGAGATTATAGTCGACTACAATCGACAACGGCTAATGTCTGGATGGATTCCACGGAGATTAGGTAAATGGAAGTCTTATAGTTTCACATAATGGTACCCCCTTACTCAAGTCTATTTGATTTTCCCTTACTCAAGTCTATTTGATTTTATCTGTGCTATTTGTAATAGGAGGGGGTCTTGGGGGTAAGAAGGAATCTGGGCAACTTCGATTTGGAGGAAGAGAAAGACCATTTCGAGCTCCGTTGTATGCTCTACTTCCCTCATTATGAATGCTGGTTGGTTATTAACTGGATGGGGTGGTTATTAATACTTTCCTTTTCTATGGATTTTAGTTCTGCTTCCTGGGTTCTCTTGTGTTATGCGTATGCCAACGAATGTTTTTTCTTTTGGCAGATGACTATGGTTTGGTCTGAATTTCCATTATACTTGGCCTCCCCTAACATGTTGTTAATTGTATTTCCATAATGAGGAAGTTGTACACCTTGAACTTGGACACATTATGGTTGAAAGTTTTCATCTCATGTTTTTCTTAAGTTTTTAACCCTATCCTTCATTTTATTTAATTTTTTTTCCTTTCTTTCTTTCTTTTTTCCGTTTGAGCTAAGATTCCTGTTGAACCATAGTTCTTGATAATGTGATCACTCCATTCGTCCTTCCAAAATCTTGTTTCCTCACTTTATTTTTATCTTGCTTCAAAAAGTTGTTTTATGCTTTCAGAATAAAGTTATCAGGGACGTATAATTACTCTAATCAGTCTTAGCATTCCTTTCATTGTCTTTAAGACTATAGTCCTTGTGGAATCAATTAAAGCATTTTCAGTCCAAAGAGATTCAAGGCCCAAAAGTGTTTTTCAAAAAACTCATTTTTATTTAAACTCTTTTGAAAAAATTTGTTTGAAATACAATTCAAAATCTATTTAAAGTGGTTGCCAAACACTCAATTTTTTTTCCAAAATGACTATTTTTTAAATTAAACACTTGAAAATTTATTCCAAACACATCCTCTGTTTCTACGGAGAATTGTTTAAGTCAAGCAAGTAATTTCAAATTCTTCATTGCTTAGTTCACTGAACTCTTAATTTCTTTGACATTAGACGATGGTCATAGTTGTCAGTGAGTTTCATGGAAATCAGAATTTCTTGATAAATCCTGCCTAAGCTCACCATTGAGGAGCTAGTTAAGTACTGCTACCAACGGTTGCACCTAAAGTAGCTAGGTCAGAAAGTAAAAGTAATTCCTGTTCGCTTGACATTGTGCTACAATTCCTCTCTATACTTTCCCAGCCAATTAATAGCCTGCGAATTCCTATTATTCTCTAACTTATAGCAAGTACTTCAATGATAAGGTGGCTTCTTTTATTTTTGGTGACTTTTGTTTGCTTATTCAGGGCAGGTGTCTGATCTGGATTTCTTAATCAGATTATCCAATTGTTGTCCTTTCACTTTCATTTGTCATTCATCGACTCCACATCTCTAATCCATACCCTTTTGAGCAGACGTCCGATCCCTTATGACGATTTGAAAAGGCTTGGCATTACTCCTCCTCCCAAAGGAAGATACATGTCCCGGTTTCAGGTATTTCTTCACAAATATTATTGATCTAACTGATAAAACAAGGAACATATAAGCTTTATAATCTGTCTCAATTCAATAGTAGGAACATCTTTGATGTTCATACATATTGTAGAACCTTGATGTGCTTTCACAGTATCATTCTTCTGCTCCTCCACTTGATATTTTGTAATGCAACAGACGATCACTTGACTTGAACTGAGGTCTGTATACTGTTACACCAGAAGTAATATTTTTTTTCATTGGTTCGTTGTTCGTTTTAGGTACCTTCTCCTCCCAGAAGAGAAACAGATTCTGTACGTAGGGAAGAAGGATCGAATAAGAATGATCCTACGGAGAAGGATGGACACAATCAAAGAAATAGTTCTATAGATGAAGATGATTGGTCTCATACGAGGGGCTCAAATGACTACAGAGGGGGCCATTCACACAAGGGAAACTACGAGAAGATGAAACATGAATCTAGGAGAGCCTCAAACGACAGGGATGATTATTCCCCCCACATGAGATTTTCTGAGAAGGAAGATTATTATCAAAGGAGATCAGCTGAGAAGGAAGATTATTATCAAAGGAGATCAGCCGAGAAGGAAGATCTTTATCGGAGGAGCTCTTCAGACAAGGACCGATCTCGCAGAAGAGATTCTAATGATAGGGATGATCACTCACGGAAGCGTCACAAATCTCATAGATAG

mRNA sequence

ATGAGCGGGAGCAACGTAAACAAGGTCTTCTACGCCGATAACTACCATCCCATTCAGGCCGGCAGCATCGACGGCACCGACATTCTTCCACACGACAACGCCGTCTACCGAGCTTTGCTCTGCTCCTCTGCTGGCCTCTATGATCCTCTTGGCGATCCCAAGGTCTTCGGTGACCCTTATTGCACTCTCTTCGTTGGTCGCCTTTCACATCTGACTACCGAAGACACTCTTCGCAGGGCTATGAGCAAGTATGGTCAGGTTAAGAACCTACGCTTAGTCAGACACATTGTAACTGGTTCTTCACGTGGTTATGCTTTTGTTGAGTATGAAACTGAAAAAGAGATGCGACGTGCATATGAGGATGCTCATCATTTGATGATAGATGATTCCGAGATTATAGTCGACTACAATCGACAACGGCTAATGTCTGGATGGATTCCACGGAGATTAGGAGGGGGTCTTGGGGGTAAGAAGGAATCTGGGCAACTTCGATTTGGAGGAAGAGAAAGACCATTTCGAGCTCCGTTACGTCCGATCCCTTATGACGATTTGAAAAGGCTTGGCATTACTCCTCCTCCCAAAGGAAGATACATGTCCCGGTTTCAGGTACCTTCTCCTCCCAGAAGAGAAACAGATTCTGTACGTAGGGAAGAAGGATCGAATAAGAATGATCCTACGGAGAAGGATGGACACAATCAAAGAAATAGTTCTATAGATGAAGATGATTGGTCTCATACGAGGGGCTCAAATGACTACAGAGGGGGCCATTCACACAAGGGAAACTACGAGAAGATGAAACATGAATCTAGGAGAGCCTCAAACGACAGGGATGATTATTCCCCCCACATGAGATTTTCTGAGAAGGAAGATTATTATCAAAGGAGATCAGCTGAGAAGGAAGATTATTATCAAAGGAGATCAGCCGAGAAGGAAGATCTTTATCGGAGGAGCTCTTCAGACAAGGACCGATCTCGCAGAAGAGATTCTAATGATAGGGATGATCACTCACGGAAGCGTCACAAATCTCATAGATAG

Coding sequence (CDS)

ATGAGCGGGAGCAACGTAAACAAGGTCTTCTACGCCGATAACTACCATCCCATTCAGGCCGGCAGCATCGACGGCACCGACATTCTTCCACACGACAACGCCGTCTACCGAGCTTTGCTCTGCTCCTCTGCTGGCCTCTATGATCCTCTTGGCGATCCCAAGGTCTTCGGTGACCCTTATTGCACTCTCTTCGTTGGTCGCCTTTCACATCTGACTACCGAAGACACTCTTCGCAGGGCTATGAGCAAGTATGGTCAGGTTAAGAACCTACGCTTAGTCAGACACATTGTAACTGGTTCTTCACGTGGTTATGCTTTTGTTGAGTATGAAACTGAAAAAGAGATGCGACGTGCATATGAGGATGCTCATCATTTGATGATAGATGATTCCGAGATTATAGTCGACTACAATCGACAACGGCTAATGTCTGGATGGATTCCACGGAGATTAGGAGGGGGTCTTGGGGGTAAGAAGGAATCTGGGCAACTTCGATTTGGAGGAAGAGAAAGACCATTTCGAGCTCCGTTACGTCCGATCCCTTATGACGATTTGAAAAGGCTTGGCATTACTCCTCCTCCCAAAGGAAGATACATGTCCCGGTTTCAGGTACCTTCTCCTCCCAGAAGAGAAACAGATTCTGTACGTAGGGAAGAAGGATCGAATAAGAATGATCCTACGGAGAAGGATGGACACAATCAAAGAAATAGTTCTATAGATGAAGATGATTGGTCTCATACGAGGGGCTCAAATGACTACAGAGGGGGCCATTCACACAAGGGAAACTACGAGAAGATGAAACATGAATCTAGGAGAGCCTCAAACGACAGGGATGATTATTCCCCCCACATGAGATTTTCTGAGAAGGAAGATTATTATCAAAGGAGATCAGCTGAGAAGGAAGATTATTATCAAAGGAGATCAGCCGAGAAGGAAGATCTTTATCGGAGGAGCTCTTCAGACAAGGACCGATCTCGCAGAAGAGATTCTAATGATAGGGATGATCACTCACGGAAGCGTCACAAATCTCATAGATAG

Protein sequence

MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYEDAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPTEKDGHNQRNSSIDEDDWSHTRGSNDYRGGHSHKGNYEKMKHESRRASNDRDDYSPHMRFSEKEDYYQRRSAEKEDYYQRRSAEKEDLYRRSSSDKDRSRRRDSNDRDDHSRKRHKSHR
Homology
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BLAST of Cla97C05G088910 vs. NCBI nr
Match: XP_022138184.1 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Momordica charantia])

HSP 1 Score: 483.8 bits (1244), Expect = 4.9e-133
Identity = 239/267 (89.51%), Postives = 253/267 (94.76%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           M+GSNVNKVF+A+NYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKV GDPY
Sbjct: 1   MNGSNVNKVFFAENYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVSGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYE 120
           CTLFVGRLSHLT EDTLRRAMSKYG+VKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAY+
Sbjct: 61  CTLFVGRLSHLTDEDTLRRAMSKYGRVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHH MIDD EIIVDYNRQ+LM GW+PRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQQLMPGWVPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPTEKDGHNQRNSSIDE 240
           +DDLKRLGITPPP+GRYMSRFQVPSPPRRETDSV REEGS++ D  EKDGH +R+SSIDE
Sbjct: 181 FDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVCREEGSSERDSLEKDGHTRRSSSIDE 240

Query: 241 -DDWSHTRGSNDYRGGHSHKGNYEKMK 267
            DDWS TRGS+DYR GHSHKGNYEK K
Sbjct: 241 DDDWSRTRGSSDYR-GHSHKGNYEKTK 266

[Close]
BLAST of Cla97C05G088910 vs. NCBI nr
Match: XP_008439055.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis melo])

HSP 1 Score: 452.6 bits (1163), Expect = 1.2e-123
Identity = 218/227 (96.04%), Postives = 223/227 (98.24%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDP GDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYE 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVK+LRLVRHIVTGSSRGYAFVEYETEKEMRRAY+
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHH MIDD EIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPTE 228
           YDDLKRLGITPPP+GRYMSRFQ+PSPPRRETDS RREEGSNKN+PTE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTE 227

[Close]
BLAST of Cla97C05G088910 vs. NCBI nr
Match: XP_004147652.2 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucumis sativus])

HSP 1 Score: 446.0 bits (1146), Expect = 1.1e-121
Identity = 215/226 (95.13%), Postives = 220/226 (97.35%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDIL HDNAVYRALLCSSAGLYDP GDPKVFGDPY
Sbjct: 18  MSGSNVNKVFYADNYHPIQAGSIDGTDILSHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 77

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYE 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEM+RAY+
Sbjct: 78  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMQRAYK 137

Query: 121 DAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHH MIDD EIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 138 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 197

Query: 181 YDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPT 227
           YDDLKRLGITPPP+GRY SRFQ+PSPPRRETDS RREEGSNKN+PT
Sbjct: 198 YDDLKRLGITPPPEGRYKSRFQIPSPPRRETDSERREEGSNKNEPT 243

[Close]
BLAST of Cla97C05G088910 vs. NCBI nr
Match: XP_016899124.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 443.7 bits (1140), Expect = 5.6e-121
Identity = 216/227 (95.15%), Postives = 221/227 (97.36%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDP GDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYE 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVK+LRLVRHI  GSSRGYAFVEYETEKEMRRAY+
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHI--GSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHH MIDD EIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPTE 228
           YDDLKRLGITPPP+GRYMSRFQ+PSPPRRETDS RREEGSNKN+PTE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTE 225

[Close]
BLAST of Cla97C05G088910 vs. NCBI nr
Match: XP_023538864.1 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 438.3 bits (1126), Expect = 2.3e-119
Identity = 212/233 (90.99%), Postives = 222/233 (95.28%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSNV+KVFYA+NYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPL DPKVFGDPY
Sbjct: 1   MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLRDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYE 120
           CTLFVGRLSHLTTED+LRRAMSKYG+VKNLRLVRHIVTGSSRGYAFVEYETEKEMR AY+
Sbjct: 61  CTLFVGRLSHLTTEDSLRRAMSKYGRVKNLRLVRHIVTGSSRGYAFVEYETEKEMRHAYK 120

Query: 121 DAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHH MIDD EIIVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPTEKDGHNQ 234
           +DDLKRLGITPPP+GRYMSRFQVPSPPRRETDSVRREE S   D  EKDGH++
Sbjct: 181 HDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVRREESSGVKDSVEKDGHSR 233

[Close]
BLAST of Cla97C05G088910 vs. TrEMBL
Match: tr|A0A1S3AXF1|A0A1S3AXF1_CUCME (U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483955 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 7.9e-124
Identity = 218/227 (96.04%), Postives = 223/227 (98.24%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDP GDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYE 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVK+LRLVRHIVTGSSRGYAFVEYETEKEMRRAY+
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHIVTGSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHH MIDD EIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPTE 228
           YDDLKRLGITPPP+GRYMSRFQ+PSPPRRETDS RREEGSNKN+PTE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTE 227

[Close]
BLAST of Cla97C05G088910 vs. TrEMBL
Match: tr|A0A1S4DT11|A0A1S4DT11_CUCME (U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483955 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 3.7e-121
Identity = 216/227 (95.15%), Postives = 221/227 (97.36%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDP GDPKVFGDPY
Sbjct: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPHGDPKVFGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYE 120
           CTLFVGRLSHLTTEDTLRRAMSKYGQVK+LRLVRHI  GSSRGYAFVEYETEKEMRRAY+
Sbjct: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKDLRLVRHI--GSSRGYAFVEYETEKEMRRAYK 120

Query: 121 DAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHH MIDD EIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSMIDDCEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPTE 228
           YDDLKRLGITPPP+GRYMSRFQ+PSPPRRETDS RREEGSNKN+PTE
Sbjct: 181 YDDLKRLGITPPPEGRYMSRFQIPSPPRRETDSERREEGSNKNEPTE 225

[Close]
BLAST of Cla97C05G088910 vs. TrEMBL
Match: tr|A0A218XRW5|A0A218XRW5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr000352 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.1e-108
Identity = 194/237 (81.86%), Postives = 213/237 (89.87%), Query Frame = 0 

Query: 4   SNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTL 63
           +N+N VFYA++YHPIQAGSIDGTDILPHDNAVYRA LCSSAGLYDPLGDPKV GDPYCTL
Sbjct: 3   NNLNSVFYAESYHPIQAGSIDGTDILPHDNAVYRAHLCSSAGLYDPLGDPKVIGDPYCTL 62

Query: 64  FVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYEDAH 123
           FVGRLSH TTE TLR AMSKYG+VKNLRLVRHIVTG+SRGYAFVE+ETE+EMRRAY+DAH
Sbjct: 63  FVGRLSHFTTEGTLREAMSKYGRVKNLRLVRHIVTGASRGYAFVEFETEREMRRAYKDAH 122

Query: 124 HLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYDD 183
           H  IDDSEIIVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYD+
Sbjct: 123 HSFIDDSEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYDE 182

Query: 184 LKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNKNDPTEKDGHNQRNSSIDE 241
           LKRLGI PPP+GRYMSRFQVPSPPRRE  S   E GS ++     DG ++R+S+ D+
Sbjct: 183 LKRLGIPPPPEGRYMSRFQVPSPPRREKSSPDLERGSRRSSKDRADGIHRRSSTDDD 239

[Close]
BLAST of Cla97C05G088910 vs. TrEMBL
Match: tr|A0A1U8AAP0|A0A1U8AAP0_NELNU (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Nelumbo nucifera OX=4432 GN=LOC104601990 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.2e-107
Identity = 189/220 (85.91%), Postives = 202/220 (91.82%), Query Frame = 0 

Query: 1   MSGSNVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPY 60
           M+ SN+N VFYAD+YHPIQAGSIDGTDILPHDNA+YRALLCSSAGLYDP GD KV GDPY
Sbjct: 1   MASSNINSVFYADSYHPIQAGSIDGTDILPHDNAIYRALLCSSAGLYDPFGDSKVIGDPY 60

Query: 61  CTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYE 120
           CTLFVG LSH+TTEDTLR+AMS+YG+VKNLRLVRHIVTG+S GYAFVEYE EKE+RRAY 
Sbjct: 61  CTLFVGHLSHITTEDTLRKAMSRYGKVKNLRLVRHIVTGASCGYAFVEYENEKEIRRAYV 120

Query: 121 DAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180
           DAHH +IDDSEIIVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP
Sbjct: 121 DAHHSIIDDSEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIP 180

Query: 181 YDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGS 221
            DDLKRLGI PPP+GRYMSRFQVPSPPRR   SV REE S
Sbjct: 181 LDDLKRLGIPPPPEGRYMSRFQVPSPPRRPRSSVDREEHS 220

[Close]
BLAST of Cla97C05G088910 vs. TrEMBL
Match: tr|A0A251QYQ3|A0A251QYQ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G172700 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.2e-105
Identity = 186/224 (83.04%), Postives = 207/224 (92.41%), Query Frame = 0 

Query: 1   MSGS--NVNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGD 60
           MSG   NVN VFYA+ YHP+QAGSIDGTDILPHDNAVYRA LCSSAGLYDPLGDPK+ GD
Sbjct: 3   MSGRNVNVNSVFYAEAYHPVQAGSIDGTDILPHDNAVYRAFLCSSAGLYDPLGDPKLIGD 62

Query: 61  PYCTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRA 120
           PYCTLFVG LSHLTTE +LR+A+SKYG+VK+LRLVRHIVTG+SRGYAFVEYETE+EM+RA
Sbjct: 63  PYCTLFVGHLSHLTTEQSLRKALSKYGRVKDLRLVRHIVTGASRGYAFVEYETEREMQRA 122

Query: 121 YEDAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRP 180
           Y++AHH  IDDSE+IVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR 
Sbjct: 123 YKEAHHSFIDDSEVIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRS 182

Query: 181 IPYDDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREEGSNK 223
           IPYDDL+RLGI PPP+GRYMSR+QVPSPPRR+ +SV REEG +K
Sbjct: 183 IPYDDLERLGIPPPPEGRYMSRYQVPSPPRRKRNSVDREEGIHK 226

[Close]
BLAST of Cla97C05G088910 vs. Swiss-Prot
Match: sp|Q8VY74|U1135_ARATH (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 2.0e-98
Identity = 173/217 (79.72%), Postives = 190/217 (87.56%), Query Frame = 0 

Query: 3   GSN-VNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYC 62
           G+N VNKVFYA +YHPIQAGSIDGTD+ PHDN V RALLC +AGLYDP GD K  GDPYC
Sbjct: 5   GNNVVNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYC 64

Query: 63  TLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYED 122
           TLFVGRLSH TTEDTLR  MSKYG++KNLRLVRHIVTG+SRGY FVEYETEKEM RAYED
Sbjct: 65  TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124

Query: 123 AHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPY 182
           AHH +ID  EIIVDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGR+RPFRAPLRPIP+
Sbjct: 125 AHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRPFRAPLRPIPH 184

Query: 183 DDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREE 219
           +DLK+LGI  PP+GRYMSR Q+PSPPRR+     REE
Sbjct: 185 EDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREE 221

[Close]
BLAST of Cla97C05G088910 vs. Swiss-Prot
Match: sp|Q16560|U1SBP_HUMAN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.0e-50
Identity = 102/178 (57.30%), Postives = 126/178 (70.79%), Query Frame = 0 

Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVIGDPLLTLFVARLNLQ 67

Query: 72  TTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYEDAHHLMIDDSE 131
           T ED L+   S+YG ++ LRLVR +VTG S+GYAF+EY+ E+ + +AY DA  L+ID  E
Sbjct: 68  TKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHE 127

Query: 132 IIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPYDDLKRLG 189
           I VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  +DL R G
Sbjct: 128 IFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREG 179

[Close]
BLAST of Cla97C05G088910 vs. Swiss-Prot
Match: sp|Q1LZH0|U1SBP_BOVIN (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus OX=9913 GN=SNRNP35 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.1e-49
Identity = 100/178 (56.18%), Postives = 125/178 (70.22%), Query Frame = 0 

Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YTP--NKGVTGDPLLTLFVARLNLQ 67

Query: 72  TTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYEDAHHLMIDDSE 131
           T E+ L+   S+YG ++ LRLVR +VTG S+GYAF+EY+ E+ + +AY DA  L+ID  E
Sbjct: 68  TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVIDQHE 127

Query: 132 IIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPYDDLKRLG 189
           I VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  +D  R G
Sbjct: 128 IFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDQFREG 179

[Close]
BLAST of Cla97C05G088910 vs. Swiss-Prot
Match: sp|Q5U1W5|U1SBP_RAT (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus OX=10116 GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-48
Identity = 99/178 (55.62%), Postives = 125/178 (70.22%), Query Frame = 0 

Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNSQ 67

Query: 72  TTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYEDAHHLMIDDSE 131
           T E+ L+   S+YG ++ LRLVR +VTG S+GYAF+EY+ E+ + +AY DA  L+ID  E
Sbjct: 68  TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHE 127

Query: 132 IIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPYDDLKRLG 189
           I VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  ++  R G
Sbjct: 128 IFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNEPHREG 179

[Close]
BLAST of Cla97C05G088910 vs. Swiss-Prot
Match: sp|Q9D384|U1SBP_MOUSE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus OX=10090 GN=Snrnp35 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.5e-48
Identity = 99/178 (55.62%), Postives = 125/178 (70.22%), Query Frame = 0 

Query: 12  ADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYCTLFVGRLSHL 71
           A  Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  
Sbjct: 8   AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNLQ 67

Query: 72  TTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYEDAHHLMIDDSE 131
           T E+ L+   S+YG ++ LRLVR +VTG S+GYAF+EY+ E+ + +AY DA  L+ID  E
Sbjct: 68  TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHE 127

Query: 132 IIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPYDDLKRLG 189
           I VDY  +R + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  ++  R G
Sbjct: 128 IFVDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNEPHREG 179

[Close]
BLAST of Cla97C05G088910 vs. TAIR10
Match: AT2G43370.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 360.5 bits (924), Expect = 1.1e-99
Identity = 173/217 (79.72%), Postives = 190/217 (87.56%), Query Frame = 0 

Query: 3   GSN-VNKVFYADNYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPLGDPKVFGDPYC 62
           G+N VNKVFYA +YHPIQAGSIDGTD+ PHDN V RALLC +AGLYDP GD K  GDPYC
Sbjct: 5   GNNVVNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYC 64

Query: 63  TLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYED 122
           TLFVGRLSH TTEDTLR  MSKYG++KNLRLVRHIVTG+SRGY FVEYETEKEM RAYED
Sbjct: 65  TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124

Query: 123 AHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPY 182
           AHH +ID  EIIVDYNRQ+LM GWIPRRLGGGLGG+KESGQLRFGGR+RPFRAPLRPIP+
Sbjct: 125 AHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRPFRAPLRPIPH 184

Query: 183 DDLKRLGITPPPKGRYMSRFQVPSPPRRETDSVRREE 219
           +DLK+LGI  PP+GRYMSR Q+PSPPRR+     REE
Sbjct: 185 EDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREE 221

[Close]
BLAST of Cla97C05G088910 vs. TAIR10
Match: AT3G50670.1 (U1 small nuclear ribonucleoprotein-70K)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-24
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 0 

Query: 47  YDPLGDPKVFGDPYCTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAF 106
           YDP  DP   GDPY TLFV RL++ ++E  ++R    YG +K + LV   +T   +GYAF
Sbjct: 124 YDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAF 183

Query: 107 VEYETEKEMRRAYEDAHHLMIDDSEIIVDYNRQRLMSGWIPRRLGGGLGGKKESGQLRFG 166
           +EY   ++M+ AY+ A    ID   ++VD  R R +  W PRRLGGGLG  +  G     
Sbjct: 184 IEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIV 243

Query: 167 GRERP 172
           G ++P
Sbjct: 244 GEQQP 248

[Close]
BLAST of Cla97C05G088910 vs. TAIR10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-09
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0 

Query: 59  PYCTLFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRA 118
           P   L+V  LS  TTEDTLR    ++G + ++ +V   V    +G+AF+ YETE+E  +A
Sbjct: 75  PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134

Query: 119 YEDAHHLMIDDSEIIVDYNRQRL-MSGWIPRR 150
            +  H   +D   I V+  + R  MS   PRR
Sbjct: 135 IQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRR 166

[Close]
BLAST of Cla97C05G088910 vs. TAIR10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-08
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 63  LFVGRLSHLTTEDTLRRAMSKYGQVKNLRLVRHIVTGSSRGYAFVEYETEKEMRRAYEDA 122
           LFV RLS  TT+ +LR+  S +GQ+K  RL+R   T   +G+ F+ +++E + R+A +  
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 123 HHLMIDDSEIIVD 136
              ++D   I V+
Sbjct: 69  DGKIVDGRLIFVE 81

[Close]
BLAST of Cla97C05G088910 vs. TAIR10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-08
Identity = 34/114 (29.82%), Postives = 54/114 (47.37%), Query Frame = 0 

Query: 37  RALLCSSAGLYDPLG-------DPKVFGDPYCTLFVGRLSHLTTEDTLRRAMSKYGQVKN 96
           R L CS+A  +  L          +   +P   LFV  LS  TT + LR A +++G+V +
Sbjct: 25  RRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVAD 84

Query: 97  LRLVRHIVTGSSRGYAFVEYETEKEMRRAYEDAHHLMIDDSEIIVDYNRQRLMS 144
            ++V   V+G S+G+ FV Y T ++  +         +D   I  +Y R R  S
Sbjct: 85  AKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQS 138

The following BLAST results are available for this feature:
BLAST of Cla97C05G088910 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138184.14.9e-13389.51U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Momordica charantia][more]
XP_008439055.11.2e-12396.04PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cu... [more]
XP_004147652.21.1e-12195.13PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucumis sativ... [more]
XP_016899124.15.6e-12195.15PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X2 [Cu... [more]
XP_023538864.12.3e-11990.99U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucurbita pepo subsp. pe... [more]
BLAST of Cla97C05G088910 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AXF1|A0A1S3AXF1_CUCME7.9e-12496.04U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 OS=Cucumis mel... [more]
tr|A0A1S4DT11|A0A1S4DT11_CUCME3.7e-12195.15U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X2 OS=Cucumis mel... [more]
tr|A0A218XRW5|A0A218XRW5_PUNGR2.1e-10881.86Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr000352 PE=4 SV=1[more]
tr|A0A1U8AAP0|A0A1U8AAP0_NELNU5.2e-10785.91U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Nelumbo nucifera OX=44... [more]
tr|A0A251QYQ3|A0A251QYQ3_PRUPE2.2e-10583.04Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G172700 PE=4 SV=1[more]
BLAST of Cla97C05G088910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VY74|U1135_ARATH2.0e-9879.72U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana O... [more]
sp|Q16560|U1SBP_HUMAN6.0e-5057.30U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens OX=9606 G... [more]
sp|Q1LZH0|U1SBP_BOVIN5.1e-4956.18U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus OX=9913 GN=... [more]
sp|Q5U1W5|U1SBP_RAT1.9e-4855.62U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus OX=1... [more]
sp|Q9D384|U1SBP_MOUSE2.5e-4855.62U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus OX=10090 ... [more]
BLAST of Cla97C05G088910 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43370.11.1e-9979.72RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G50670.11.6e-2441.60U1 small nuclear ribonucleoprotein-70K[more]
AT1G73530.13.1e-0936.96RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G46020.14.5e-0835.62RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G54580.14.5e-0829.82RNA-binding (RRM/RBD/RNP motifs) family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034146snRNP35_RRM
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0044699 single-organism process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0008284 positive regulation of cell proliferation
biological_process GO:0008150 biological_process
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0044424 intracellular part
cellular_component GO:0005575 cellular_component
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005634 nucleus
cellular_component GO:0030529 intracellular ribonucleoprotein complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G088910.1Cla97C05G088910.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 62..135
e-value: 5.1E-21
score: 85.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 63..132
e-value: 3.7E-18
score: 65.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 61..139
score: 16.398
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 48..169
e-value: 1.7E-29
score: 104.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..336
NoneNo IPR availablePANTHERPTHR13952:SF6U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEINcoord: 1..300
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 1..300
IPR034146snRNP35, RNA recognition motifCDDcd12237RRM_snRNP35coord: 58..147
e-value: 7.63263E-50
score: 162.813
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 49..167