Lsi05G011920 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G011920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_360
Location	chr05 : 19804581 .. 19805075 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGAATGGCTTCAGAACAGCAAATAAAATCCCTAGAACCTACGCGACGGCGACTGCACCGAGGATGAAATCTTACGCGCCGGCAGCCGATTTCTCGCGATTCGATCACCATCACCAGCAGCAACAGAGCAAGTCGAAGGCGTCAAGAGCCGGCGATTTTGTTCCGGTATATGTGGCGGTCGGAATGATTGCGCTCTCTGTAGGTCTCGGTTTGCACACGGCGAAACAGCAATTGGCTCATTCGCCGTCTGTTTCCGTTCGGAAGAAACGGAGAGAGACGATCCCGGAAGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACTGAGAAGTTCTTCGCTAAATCGTTCTTCAGAAAAGTGGCTCACGTTCAGGAAGTGGAGAAATTTGGTGATTACAAAGTTCCTTACGATCCTCTGCTTGGCGATGCTTATGCTCATCGCCACCGTACAGAGACGCTGAAATCCGTCGGAATTGATCCCGCTTCGAACTGA

mRNA sequence

ATGGCGGCGAATGGCTTCAGAACAGCAAATAAAATCCCTAGAACCTACGCGACGGCGACTGCACCGAGGATGAAATCTTACGCGCCGGCAGCCGATTTCTCGCGATTCGATCACCATCACCAGCAGCAACAGAGCAAGTCGAAGGCGTCAAGAGCCGGCGATTTTGTTCCGGTATATGTGGCGGTCGGAATGATTGCGCTCTCTGTAGGTCTCGGTTTGCACACGGCGAAACAGCAATTGGCTCATTCGCCGTCTGTTTCCGTTCGGAAGAAACGGAGAGAGACGATCCCGGAAGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACTGAGAAGTTCTTCGCTAAATCGTTCTTCAGAAAAGTGGCTCACGTTCAGGAAGTGGAGAAATTTGGTGATTACAAAGTTCCTTACGATCCTCTGCTTGGCGATGCTTATGCTCATCGCCACCGTACAGAGACGCTGAAATCCGTCGGAATTGATCCCGCTTCGAACTGA

Coding sequence (CDS)

ATGGCGGCGAATGGCTTCAGAACAGCAAATAAAATCCCTAGAACCTACGCGACGGCGACTGCACCGAGGATGAAATCTTACGCGCCGGCAGCCGATTTCTCGCGATTCGATCACCATCACCAGCAGCAACAGAGCAAGTCGAAGGCGTCAAGAGCCGGCGATTTTGTTCCGGTATATGTGGCGGTCGGAATGATTGCGCTCTCTGTAGGTCTCGGTTTGCACACGGCGAAACAGCAATTGGCTCATTCGCCGTCTGTTTCCGTTCGGAAGAAACGGAGAGAGACGATCCCGGAAGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACTGAGAAGTTCTTCGCTAAATCGTTCTTCAGAAAAGTGGCTCACGTTCAGGAAGTGGAGAAATTTGGTGATTACAAAGTTCCTTACGATCCTCTGCTTGGCGATGCTTATGCTCATCGCCACCGTACAGAGACGCTGAAATCCGTCGGAATTGATCCCGCTTCGAACTGA

Protein sequence

MAANGFRTANKIPRTYATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDPASN

Homology

[Close]

BLAST of Lsi05G011920 vs. TrEMBL
Match: A0A0A0L610_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183970 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.9e-72
Identity = 143/164 (87.20%), Postives = 148/164 (90.24%), Query Frame = 1


Query: 1   MAANGFRTANKIPRTYATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYV 60
           MAANGF+T+    RTYATAT PRMKSYAP ADFS F H     QSK KASRAGDFVPVYV
Sbjct: 10  MAANGFKTSYGSTRTYATATTPRMKSYAPTADFSHFHH-----QSKPKASRAGDFVPVYV 69

Query: 61  AVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK 120
           A+GMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK
Sbjct: 70  AIGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK 129

Query: 121 VAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDPASN 165
           VAH+QEVEKFGDYKVPYDPLLGDAYAH HRTE+LKSVGIDPA N
Sbjct: 130 VAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Lsi05G011920 vs. TrEMBL
Match: A0A0B2QBM6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026991 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 94/147 (63.95%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 16  YATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAVGMIALSVGLGLHT 75
           YAT+TAP+MK+YA AAD+      H+QQ  KS A R  DFV +YVA+GMIALS GLGLHT
Sbjct: 24  YATSTAPKMKAYAAAADYG-----HKQQHGKS-AKR--DFVAIYVAIGMIALSTGLGLHT 83

Query: 76  AKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYKV 135
           A QQL +SP+VSV+K+RRET+PEVVEP+HVAEE EKF  KSFFRKVAHVQE   + D+  
Sbjct: 84  AWQQLRNSPTVSVKKQRRETLPEVVEPDHVAEEAEKFMKKSFFRKVAHVQE-RSYPDHHQ 143

Query: 136 PYDPLLGDAYAHRHRTETLKSVGIDPA 163
              P+ GDAY +  R ETLKSVG+DP+
Sbjct: 144 ILSPIHGDAYTYTPRVETLKSVGVDPS 161

[Close]

BLAST of Lsi05G011920 vs. TrEMBL
Match: C6SWY9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G199300 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 94/147 (63.95%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 16  YATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAVGMIALSVGLGLHT 75
           YAT+TAP+MK+YA AAD+      H+QQ  KS A R  DFV +YVA+GMIALS GLGLHT
Sbjct: 24  YATSTAPKMKAYAAAADYG-----HKQQHGKS-AKR--DFVAIYVAIGMIALSTGLGLHT 83

Query: 76  AKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYKV 135
           A QQL +SP+VSV+K+RRET+PEVVEP+HVAEE EKF  KSFFRKVAHVQE   + D+  
Sbjct: 84  AWQQLRNSPTVSVKKQRRETLPEVVEPDHVAEEAEKFMKKSFFRKVAHVQE-RSYPDHHQ 143

Query: 136 PYDPLLGDAYAHRHRTETLKSVGIDPA 163
              P+ GDAY +  R ETLKSVG+DP+
Sbjct: 144 ILSPIHGDAYTYTPRVETLKSVGVDPS 161

[Close]

BLAST of Lsi05G011920 vs. TrEMBL
Match: U5FX76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.7e-39
Identity = 88/147 (59.86%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 15  TYATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAVGMIALSVGLGLH 74
           TYAT+T P++KSYAP AD  +F HH+ Q+    K  R GDFVPVYVA+GMIA+S+ LGL+
Sbjct: 21  TYATSTPPKLKSYAPTAD--QFGHHYHQESKHGKKVR-GDFVPVYVAIGMIAVSISLGLY 80

Query: 75  TAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYK 134
           TAKQQ+ ++P+V VRKK RETIPEVV+P+ V +E +KF  KSFFRKVAHVQE + +G   
Sbjct: 81  TAKQQVLYAPNVRVRKKTRETIPEVVDPDKVVDEADKFIKKSFFRKVAHVQEFDHYGLEY 140

Query: 135 VPYDPLLGDAYAHRHRTETLKSVGIDP 162
           +P DP   DA+A + R ETLK VG+DP
Sbjct: 141 LP-DPTRKDAFARKPRAETLKDVGVDP 163

[Close]

BLAST of Lsi05G011920 vs. TrEMBL
Match: B9I433_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 2.7e-39
Identity = 88/147 (59.86%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 15  TYATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAVGMIALSVGLGLH 74
           TYAT+T P++KSYAP AD  +F HH+ Q+    K  R GDFVPVYVA+GMIA+S+ LGL+
Sbjct: 34  TYATSTPPKLKSYAPTAD--QFGHHYHQESKHGKKVR-GDFVPVYVAIGMIAVSISLGLY 93

Query: 75  TAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYK 134
           TAKQQ+ ++P+V VRKK RETIPEVV+P+ V +E +KF  KSFFRKVAHVQE + +G   
Sbjct: 94  TAKQQVLYAPNVRVRKKTRETIPEVVDPDKVVDEADKFIKKSFFRKVAHVQEFDHYGLEY 153

Query: 135 VPYDPLLGDAYAHRHRTETLKSVGIDP 162
           +P DP   DA+A + R ETLK VG+DP
Sbjct: 154 LP-DPTRKDAFARKPRAETLKDVGVDP 176

[Close]

BLAST of Lsi05G011920 vs. TAIR10
Match: AT5G07330.1 (AT5G07330.1 unknown protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-27
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 1


Query: 14  RTYATATA-PRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAVGMIALSVGLG 73
           RTY  AT  PR K+Y+ AA       +  Q+ + + A+  GDF PVYV++G+I+LSV  G
Sbjct: 17  RTYTKATTVPRSKAYSTAAT-----EYGGQRTATTAAATKGDFTPVYVSIGLISLSVTFG 76

Query: 74  LHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGD 133
           ++TA   L  +P V V KK RET+PE+ +P+ V  E ++F  +S+FRK+AHVQE +K   
Sbjct: 77  VYTAYLHLHENPGVRVNKKMRETVPEIEDPDRVLNEADRFANRSWFRKIAHVQEFDK--- 136

Query: 134 YKVPYDPLLGDAYAHRHRTETLKSVGIDP 162
             V  DP+  D +AH+ R  TLK VG+DP
Sbjct: 137 QDVISDPIRKDQFAHKPRALTLKDVGVDP 157

[Close]

BLAST of Lsi05G011920 vs. TAIR10
Match: AT1G63060.1 (AT1G63060.1 unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-16
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 43  QQSKSKASRAGDFVPVYVAVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEP 102
           +Q+ +K S  G+F PV +  G + L+V +  H+ KQQL H+P++S RK RR  + EV +P
Sbjct: 31  KQTYNKFSIMGEFAPVAIIGGFVGLAVLMAGHSLKQQLMHAPAISTRKNRRAAVAEVDDP 90

Query: 103 EHVAEETEKFFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDP 162
           E+     +KF  KS+ RKV  +Q+  K     +  DP   + +      ETL SVG+ P
Sbjct: 91  ENCVSSADKFINKSWLRKVGQIQDKSK----AILSDPTRPNPFTTPRNAETLNSVGVAP 145

[Close]

BLAST of Lsi05G011920 vs. NCBI nr
Match: gi|659077579|ref|XP_008439275.1| (PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 147/164 (89.63%), Postives = 151/164 (92.07%), Query Frame = 1


Query: 1   MAANGFRTANKIPRTYATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYV 60
           MAANGFRT+NK  RTYATAT PRMKSYAP ADFS FDH     QSK KASRAGDFVPVYV
Sbjct: 10  MAANGFRTSNKSTRTYATATTPRMKSYAPTADFSHFDH-----QSKPKASRAGDFVPVYV 69

Query: 61  AVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK 120
           A+GMIALSVGLGLHTAKQQLA+SPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK
Sbjct: 70  AIGMIALSVGLGLHTAKQQLAYSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK 129

Query: 121 VAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDPASN 165
           VAHVQEVEKFGDYKVPYDPLLGDAYAH HRTE+LKSVGIDPA N
Sbjct: 130 VAHVQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Lsi05G011920 vs. NCBI nr
Match: gi|778679715|ref|XP_011651187.1| (PREDICTED: uncharacterized protein LOC105434852 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 9.9e-72
Identity = 143/164 (87.20%), Postives = 148/164 (90.24%), Query Frame = 1


Query: 1   MAANGFRTANKIPRTYATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYV 60
           MAANGF+T+    RTYATAT PRMKSYAP ADFS F H     QSK KASRAGDFVPVYV
Sbjct: 10  MAANGFKTSYGSTRTYATATTPRMKSYAPTADFSHFHH-----QSKPKASRAGDFVPVYV 69

Query: 61  AVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK 120
           A+GMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK
Sbjct: 70  AIGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRK 129

Query: 121 VAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDPASN 165
           VAH+QEVEKFGDYKVPYDPLLGDAYAH HRTE+LKSVGIDPA N
Sbjct: 130 VAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Lsi05G011920 vs. NCBI nr
Match: gi|1009142119|ref|XP_015888551.1| (PREDICTED: uncharacterized protein LOC107423498 [Ziziphus jujuba])

HSP 1 Score: 182.6 bits (462), Expect = 5.7e-43
Identity = 103/159 (64.78%), Postives = 118/159 (74.21%), Query Frame = 1


Query: 3   ANGFRTANKIPRTYATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAV 62
           ANGFR        Y TAT P+MKSYAP ADF +F  H QQQQ K      GDFVPVYVA+
Sbjct: 13  ANGFRQ-------YVTATPPKMKSYAPTADFGQF--HRQQQQRKPPMK--GDFVPVYVAI 72

Query: 63  GMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVA 122
           GMIALSV LGLHTAKQQL +SP+V V+KKRRET+PEVVEPEHV E+ ++F  KSFFRKVA
Sbjct: 73  GMIALSVTLGLHTAKQQLMNSPTVYVKKKRRETLPEVVEPEHVLEQADRFVKKSFFRKVA 132

Query: 123 HVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDP 162
           H+Q+     D+ V  DP  GDA+AHR R ETLKSVG+DP
Sbjct: 133 HIQDPNH--DH-VLSDPTRGDAFAHRPRAETLKSVGVDP 157

[Close]

BLAST of Lsi05G011920 vs. NCBI nr
Match: gi|351727367|ref|NP_001237926.1| (uncharacterized protein LOC100305868 [Glycine max])

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-39
Identity = 94/147 (63.95%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 16  YATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAVGMIALSVGLGLHT 75
           YAT+TAP+MK+YA AAD+      H+QQ  KS A R  DFV +YVA+GMIALS GLGLHT
Sbjct: 24  YATSTAPKMKAYAAAADYG-----HKQQHGKS-AKR--DFVAIYVAIGMIALSTGLGLHT 83

Query: 76  AKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYKV 135
           A QQL +SP+VSV+K+RRET+PEVVEP+HVAEE EKF  KSFFRKVAHVQE   + D+  
Sbjct: 84  AWQQLRNSPTVSVKKQRRETLPEVVEPDHVAEEAEKFMKKSFFRKVAHVQE-RSYPDHHQ 143

Query: 136 PYDPLLGDAYAHRHRTETLKSVGIDPA 163
              P+ GDAY +  R ETLKSVG+DP+
Sbjct: 144 ILSPIHGDAYTYTPRVETLKSVGVDPS 161

[Close]

BLAST of Lsi05G011920 vs. NCBI nr
Match: gi|566197924|ref|XP_002318188.2| (hypothetical protein POPTR_0012s11280g [Populus trichocarpa])

HSP 1 Score: 169.9 bits (429), Expect = 3.8e-39
Identity = 88/147 (59.86%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 15  TYATATAPRMKSYAPAADFSRFDHHHQQQQSKSKASRAGDFVPVYVAVGMIALSVGLGLH 74
           TYAT+T P++KSYAP AD  +F HH+ Q+    K  R GDFVPVYVA+GMIA+S+ LGL+
Sbjct: 34  TYATSTPPKLKSYAPTAD--QFGHHYHQESKHGKKVR-GDFVPVYVAIGMIAVSISLGLY 93

Query: 75  TAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYK 134
           TAKQQ+ ++P+V VRKK RETIPEVV+P+ V +E +KF  KSFFRKVAHVQE + +G   
Sbjct: 94  TAKQQVLYAPNVRVRKKTRETIPEVVDPDKVVDEADKFIKKSFFRKVAHVQEFDHYGLEY 153

Query: 135 VPYDPLLGDAYAHRHRTETLKSVGIDP 162
           +P DP   DA+A + R ETLK VG+DP
Sbjct: 154 LP-DPTRKDAFARKPRAETLKDVGVDP 176

The following BLAST results are available for this feature:

BLAST of Lsi05G011920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G011920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L610_CUCSA	6.9e-72	87.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183970 PE=4 SV=1	[more]
A0A0B2QBM6_GLYSO	1.2e-39	63.95	Uncharacterized protein OS=Glycine soja GN=glysoja_026991 PE=4 SV=1	[more]
C6SWY9_SOYBN	1.2e-39	63.95	Uncharacterized protein OS=Glycine max GN=GLYMA_05G199300 PE=2 SV=1	[more]
U5FX76_POPTR	2.7e-39	59.86	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=1	[more]
B9I433_POPTR	2.7e-39	59.86	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=2	[more]

BLAST of Lsi05G011920 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07330.1	1.6e-27	44.97	unknown protein	[more]
AT1G63060.1	3.7e-16	36.97	unknown protein	[more]

BLAST of Lsi05G011920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077579\|ref\|XP_008439275.1\|	4.8e-74	89.63	PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo]	[more]
gi\|778679715\|ref\|XP_011651187.1\|	9.9e-72	87.20	PREDICTED: uncharacterized protein LOC105434852 [Cucumis sativus]	[more]
gi\|1009142119\|ref\|XP_015888551.1\|	5.7e-43	64.78	PREDICTED: uncharacterized protein LOC107423498 [Ziziphus jujuba]	[more]
gi\|351727367\|ref\|NP_001237926.1\|	1.7e-39	63.95	uncharacterized protein LOC100305868 [Glycine max]	[more]
gi\|566197924\|ref\|XP_002318188.2\|	3.8e-39	59.86	hypothetical protein POPTR_0012s11280g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G011920.1	Lsi05G011920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33919	FAMILY NOT NAMED	coord: 15..161 score: 6.3
None	No IPR available	PANTHER	PTHR33919:SF2	SUBFAMILY NOT NAMED	coord: 15..161 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G011920	Csa3G183970	Cucumber (Chinese Long) v2	culsiB210
Lsi05G011920	CSPI03G17300	Wild cucumber (PI 183967)	cpilsiB208
Lsi05G011920	Cucsa.108160	Cucumber (Gy14) v1	cgylsiB143
Lsi05G011920	CmaCh18G012710	Cucurbita maxima (Rimu)	cmalsiB387
Lsi05G011920	CmoCh18G013020	Cucurbita moschata (Rifu)	cmolsiB372
Lsi05G011920	Cla006145	Watermelon (97103) v1	lsiwmB366
Lsi05G011920	MELO3C006933	Melon (DHL92) v3.5.1	lsimeB374
Lsi05G011920	MELO3C006933.2	Melon (DHL92) v3.6.1	lsimedB391
Lsi05G011920	Cla97C05G090520	Watermelon (97103) v2	lsiwmbB334
Lsi05G011920	BhiUN557G23	Wax gourd	lsiwgoB429
Lsi05G011920	Cp4.1LG09g00670	Cucurbita pepo (Zucchini)	cpelsiB035
Lsi05G011920	Carg22131	Silver-seed gourd	carlsiB675
Lsi05G011920	CsaV3_3G017500	Cucumber (Chinese Long) v3	cuclsiB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G011920	Bottle gourd (USVL1VR-Ls)	lsilsiB010
Lsi05G011920	Bottle gourd (USVL1VR-Ls)	lsilsiB160
Lsi05G011920	Cucurbita maxima (Rimu)	cmalsiB312
Lsi05G011920	Cucurbita maxima (Rimu)	cmalsiB587
Lsi05G011920	Cucurbita maxima (Rimu)	cmalsiB836
Lsi05G011920	Cucurbita moschata (Rifu)	cmolsiB300
Lsi05G011920	Cucurbita moschata (Rifu)	cmolsiB567
Lsi05G011920	Cucurbita pepo (Zucchini)	cpelsiB172
Lsi05G011920	Cucurbita pepo (Zucchini)	cpelsiB618
Lsi05G011920	Wild cucumber (PI 183967)	cpilsiB380
Lsi05G011920	Cucumber (Chinese Long) v2	culsiB377
Lsi05G011920	Melon (DHL92) v3.5.1	lsimeB341
Lsi05G011920	Melon (DHL92) v3.5.1	lsimeB379
Lsi05G011920	Watermelon (Charleston Gray)	lsiwcgB323
Lsi05G011920	Watermelon (Charleston Gray)	lsiwcgB336
Lsi05G011920	Watermelon (97103) v1	lsiwmB374
Lsi05G011920	Cucumber (Gy14) v2	cgyblsiB193
Lsi05G011920	Cucumber (Gy14) v2	cgyblsiB197
Lsi05G011920	Melon (DHL92) v3.6.1	lsimedB358
Lsi05G011920	Melon (DHL92) v3.6.1	lsimedB394
Lsi05G011920	Silver-seed gourd	carlsiB650
Lsi05G011920	Silver-seed gourd	carlsiB903
Lsi05G011920	Cucumber (Chinese Long) v3	cuclsiB400
Lsi05G011920	Watermelon (97103) v2	lsiwmbB316
Lsi05G011920	Watermelon (97103) v2	lsiwmbB331