Cucsa.108160 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.108160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NFU1 iron-sulfur cluster, mitochondrial
Location	scaffold00931 : 361784 .. 362146 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAAGCCAAAGGCCTCAAGAGCCGGCGATTTTGTTCCGGTATACGTGGCCATCGGAATGATTGCTCTCTCTGTTGGTCTCGGATTGCACATGGCGAAACAGCAATTGGCTCACTCGCCATCGGTTTCCGTTCGGAAGAAACGGAGAGAGACGATCCCGGAGGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACAGAGAAGTTCTTCGCTAAATCTTTCTTTAGAAAAGTGGCTCACATTCAGGAGGTAGAGAAATTTGGGGACTACAAAGTTCCTTATGATCCTCTGCTCGGCGATGCATATGCTCATCCTCACCGTACTGAGTCGCTGAAGTCCGTGGGAATCGATCCGGCTAGGAACTGA

mRNA sequence

AGTAAGCCAAAGGCCTCAAGAGCCGGCGATTTTGTTCCGGTATACGTGGCCATCGGAATGATTGCTCTCTCTGTTGGTCTCGGATTGCACATGGCGAAACAGCAATTGGCTCACTCGCCATCGGTTTCCGTTCGGAAGAAACGGAGAGAGACGATCCCGGAGGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACAGAGAAGTTCTTCGCTAAATCTTTCTTTAGAAAAGTGGCTCACATTCAGGAGGTAGAGAAATTTGGGGACTACAAAGTTCCTTATGATCCTCTGCTCGGCGATGCATATGCTCATCCTCACCGTACTGAGTCGCTGAAGTCCGTGGGAATCGATCCGGCTAGGAACTGA

Coding sequence (CDS)

AGTAAGCCAAAGGCCTCAAGAGCCGGCGATTTTGTTCCGGTATACGTGGCCATCGGAATGATTGCTCTCTCTGTTGGTCTCGGATTGCACATGGCGAAACAGCAATTGGCTCACTCGCCATCGGTTTCCGTTCGGAAGAAACGGAGAGAGACGATCCCGGAGGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACAGAGAAGTTCTTCGCTAAATCTTTCTTTAGAAAAGTGGCTCACATTCAGGAGGTAGAGAAATTTGGGGACTACAAAGTTCCTTATGATCCTCTGCTCGGCGATGCATATGCTCATCCTCACCGTACTGAGTCGCTGAAGTCCGTGGGAATCGATCCGGCTAGGAACTGA

Protein sequence

SKPKASRAGDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN*

Homology

[Close]

BLAST of Cucsa.108160 vs. TrEMBL
Match: A0A0A0L610_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183970 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-60
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   SKPKASRAGDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEH 60
           SKPKASRAGDFVPVYVAIGMIALSVGLGLH AKQQLAHSPSVSVRKKRRETIPEVVEPEH
Sbjct: 49  SKPKASRAGDFVPVYVAIGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEH 108

Query: 61  VAEETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 120
           VAEETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN
Sbjct: 109 VAEETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Cucsa.108160 vs. TrEMBL
Match: C6SWY9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G199300 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.7e-32
Identity = 72/109 (66.06%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 10  DFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFF 69
           DFV +YVAIGMIALS GLGLH A QQL +SP+VSV+K+RRET+PEVVEP+HVAEE EKF 
Sbjct: 54  DFVAIYVAIGMIALSTGLGLHTAWQQLRNSPTVSVKKQRRETLPEVVEPDHVAEEAEKFM 113

Query: 70  AKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPA 119
            KSFFRKVAH+QE   + D+     P+ GDAY +  R E+LKSVG+DP+
Sbjct: 114 KKSFFRKVAHVQE-RSYPDHHQILSPIHGDAYTYTPRVETLKSVGVDPS 161

[Close]

BLAST of Cucsa.108160 vs. TrEMBL
Match: A0A0B2QBM6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026991 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.7e-32
Identity = 72/109 (66.06%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 10  DFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFF 69
           DFV +YVAIGMIALS GLGLH A QQL +SP+VSV+K+RRET+PEVVEP+HVAEE EKF 
Sbjct: 54  DFVAIYVAIGMIALSTGLGLHTAWQQLRNSPTVSVKKQRRETLPEVVEPDHVAEEAEKFM 113

Query: 70  AKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPA 119
            KSFFRKVAH+QE   + D+     P+ GDAY +  R E+LKSVG+DP+
Sbjct: 114 KKSFFRKVAHVQE-RSYPDHHQILSPIHGDAYTYTPRVETLKSVGVDPS 161

[Close]

BLAST of Cucsa.108160 vs. TrEMBL
Match: V4TF83_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032920mg PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.7e-31
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 3   PKASRAGDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVA 62
           PK  + GD+VPV +AIGMI LSV LGL  A QQLA SP+V VR+K RET+PEV +P+ V 
Sbjct: 55  PKPVQKGDYVPVCMAIGMITLSVSLGLVTATQQLARSPNVYVRRKTRETVPEVNDPDKVV 114

Query: 63  EETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDP 118
            + EKF  KSFFRKVAH+QE + +GD+ VP DP+  DAYAH HR E+LKSVGIDP
Sbjct: 115 SDAEKFLNKSFFRKVAHVQEFD-YGDHPVP-DPIRKDAYAHKHRVETLKSVGIDP 167

[Close]

BLAST of Cucsa.108160 vs. TrEMBL
Match: B9I433_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-29
Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 1


Query: 9   GDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKF 68
           GDFVPVYVAIGMIA+S+ LGL+ AKQQ+ ++P+V VRKK RETIPEVV+P+ V +E +KF
Sbjct: 69  GDFVPVYVAIGMIAVSISLGLYTAKQQVLYAPNVRVRKKTRETIPEVVDPDKVVDEADKF 128

Query: 69  FAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDP 118
             KSFFRKVAH+QE + +G   +P DP   DA+A   R E+LK VG+DP
Sbjct: 129 IKKSFFRKVAHVQEFDHYGLEYLP-DPTRKDAFARKPRAETLKDVGVDP 176

[Close]

BLAST of Cucsa.108160 vs. TAIR10
Match: AT5G07330.1 (AT5G07330.1 unknown protein)

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-24
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 5   ASRAGDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEE 64
           A+  GDF PVYV+IG+I+LSV  G++ A   L  +P V V KK RET+PE+ +P+ V  E
Sbjct: 48  AATKGDFTPVYVSIGLISLSVTFGVYTAYLHLHENPGVRVNKKMRETVPEIEDPDRVLNE 107

Query: 65  TEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDP 118
            ++F  +S+FRK+AH+QE +K     V  DP+  D +AH  R  +LK VG+DP
Sbjct: 108 ADRFANRSWFRKIAHVQEFDK---QDVISDPIRKDQFAHKPRALTLKDVGVDP 157

[Close]

BLAST of Cucsa.108160 vs. TAIR10
Match: AT1G63060.1 (AT1G63060.1 unknown protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 1


Query: 4   KASRAGDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAE 63
           K S  G+F PV +  G + L+V +  H  KQQL H+P++S RK RR  + EV +PE+   
Sbjct: 36  KFSIMGEFAPVAIIGGFVGLAVLMAGHSLKQQLMHAPAISTRKNRRAAVAEVDDPENCVS 95

Query: 64  ETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDP 118
             +KF  KS+ RKV  IQ+  K     +  DP   + +  P   E+L SVG+ P
Sbjct: 96  SADKFINKSWLRKVGQIQDKSK----AILSDPTRPNPFTTPRNAETLNSVGVAP 145

[Close]

BLAST of Cucsa.108160 vs. NCBI nr
Match: gi|778679715|ref|XP_011651187.1| (PREDICTED: uncharacterized protein LOC105434852 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-60
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   SKPKASRAGDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEH 60
           SKPKASRAGDFVPVYVAIGMIALSVGLGLH AKQQLAHSPSVSVRKKRRETIPEVVEPEH
Sbjct: 49  SKPKASRAGDFVPVYVAIGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEH 108

Query: 61  VAEETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 120
           VAEETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN
Sbjct: 109 VAEETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Cucsa.108160 vs. NCBI nr
Match: gi|659077579|ref|XP_008439275.1| (PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-59
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   SKPKASRAGDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEH 60
           SKPKASRAGDFVPVYVAIGMIALSVGLGLH AKQQLA+SPSVSVRKKRRETIPEVVEPEH
Sbjct: 49  SKPKASRAGDFVPVYVAIGMIALSVGLGLHTAKQQLAYSPSVSVRKKRRETIPEVVEPEH 108

Query: 61  VAEETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 120
           VAEETEKFFAKSFFRKVAH+QEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN
Sbjct: 109 VAEETEKFFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Cucsa.108160 vs. NCBI nr
Match: gi|1009142119|ref|XP_015888551.1| (PREDICTED: uncharacterized protein LOC107423498 [Ziziphus jujuba])

HSP 1 Score: 145.2 bits (365), Expect = 7.4e-32
Identity = 77/114 (67.54%), Postives = 89/114 (78.07%), Query Frame = 1


Query: 4   KASRAGDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAE 63
           K    GDFVPVYVAIGMIALSV LGLH AKQQL +SP+V V+KKRRET+PEVVEPEHV E
Sbjct: 47  KPPMKGDFVPVYVAIGMIALSVTLGLHTAKQQLMNSPTVYVKKKRRETLPEVVEPEHVLE 106

Query: 64  ETEKFFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDP 118
           + ++F  KSFFRKVAHIQ+     D+ V  DP  GDA+AH  R E+LKSVG+DP
Sbjct: 107 QADRFVKKSFFRKVAHIQDPNH--DH-VLSDPTRGDAFAHRPRAETLKSVGVDP 157

[Close]

BLAST of Cucsa.108160 vs. NCBI nr
Match: gi|351727367|ref|NP_001237926.1| (uncharacterized protein LOC100305868 [Glycine max])

HSP 1 Score: 144.8 bits (364), Expect = 9.7e-32
Identity = 72/109 (66.06%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 10  DFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFF 69
           DFV +YVAIGMIALS GLGLH A QQL +SP+VSV+K+RRET+PEVVEP+HVAEE EKF 
Sbjct: 54  DFVAIYVAIGMIALSTGLGLHTAWQQLRNSPTVSVKKQRRETLPEVVEPDHVAEEAEKFM 113

Query: 70  AKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPA 119
            KSFFRKVAH+QE   + D+     P+ GDAY +  R E+LKSVG+DP+
Sbjct: 114 KKSFFRKVAHVQE-RSYPDHHQILSPIHGDAYTYTPRVETLKSVGVDPS 161

[Close]

BLAST of Cucsa.108160 vs. NCBI nr
Match: gi|1021493324|ref|XP_016189647.1| (PREDICTED: uncharacterized protein LOC107630884 [Arachis ipaensis])

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-31
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 1


Query: 9   GDFVPVYVAIGMIALSVGLGLHMAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKF 68
           GDFVPVYVAIGMIALS GLGLH A QQL +SP+V V+K+RRET+PEVVEPEHVAEE++ F
Sbjct: 54  GDFVPVYVAIGMIALSTGLGLHTAWQQLRNSPTVRVKKQRRETLPEVVEPEHVAEESDHF 113

Query: 69  FAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPA 119
           F  SFFRKVAH+Q+   + D ++  D +  DAYA+  R E+LKSVG+DPA
Sbjct: 114 FKSSFFRKVAHVQD-RSYPDKELIPDSIRRDAYAYKPRIETLKSVGVDPA 162

The following BLAST results are available for this feature:

BLAST of Cucsa.108160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L610_CUCSA	1.5e-60	99.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183970 PE=4 SV=1	[more]
C6SWY9_SOYBN	6.7e-32	66.06	Uncharacterized protein OS=Glycine max GN=GLYMA_05G199300 PE=2 SV=1	[more]
A0A0B2QBM6_GLYSO	6.7e-32	66.06	Uncharacterized protein OS=Glycine soja GN=glysoja_026991 PE=4 SV=1	[more]
V4TF83_9ROSI	5.7e-31	63.48	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032920mg PE=4 SV=1	[more]
B9I433_POPTR	2.4e-29	61.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=2	[more]

BLAST of Cucsa.108160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07330.1	6.0e-24	46.90	unknown protein	[more]
AT1G63060.1	1.2e-16	38.60	unknown protein	[more]

BLAST of Cucsa.108160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679715\|ref\|XP_011651187.1\|	2.2e-60	99.17	PREDICTED: uncharacterized protein LOC105434852 [Cucumis sativus]	[more]
gi\|659077579\|ref\|XP_008439275.1\|	1.4e-59	97.50	PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo]	[more]
gi\|1009142119\|ref\|XP_015888551.1\|	7.4e-32	67.54	PREDICTED: uncharacterized protein LOC107423498 [Ziziphus jujuba]	[more]
gi\|351727367\|ref\|NP_001237926.1\|	9.7e-32	66.06	uncharacterized protein LOC100305868 [Glycine max]	[more]
gi\|1021493324\|ref\|XP_016189647.1\|	1.3e-31	66.36	PREDICTED: uncharacterized protein LOC107630884 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.108160.1	Cucsa.108160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33919	FAMILY NOT NAMED	coord: 4..117 score: 3.1
None	No IPR available	PANTHER	PTHR33919:SF2	SUBFAMILY NOT NAMED	coord: 4..117 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.108160	Cla006145	Watermelon (97103) v1	cgywmB152
Cucsa.108160	Csa3G183970	Cucumber (Chinese Long) v2	cgycuB132
Cucsa.108160	MELO3C006933	Melon (DHL92) v3.5.1	cgymeB145
Cucsa.108160	CSPI03G17300	Wild cucumber (PI 183967)	cgycpiB133
Cucsa.108160	CmaCh18G012710	Cucurbita maxima (Rimu)	cgycmaB0249
Cucsa.108160	CmoCh18G013020	Cucurbita moschata (Rifu)	cgycmoB0248
Cucsa.108160	Lsi05G011920	Bottle gourd (USVL1VR-Ls)	cgylsiB143
Cucsa.108160	Cp4.1LG09g00670	Cucurbita pepo (Zucchini)	cgycpeB0240
Cucsa.108160	MELO3C006933.2	Melon (DHL92) v3.6.1	cgymedB145
Cucsa.108160	CsaV3_3G017500	Cucumber (Chinese Long) v3	cgycucB137
Cucsa.108160	Cla97C05G090520	Watermelon (97103) v2	cgywmbB147
Cucsa.108160	BhiUN557G23	Wax gourd	cgywgoB168
Cucsa.108160	Carg22131	Silver-seed gourd	carcgyB0828

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.108160	Melon (DHL92) v3.6.1	cgymedB142
Cucsa.108160	Silver-seed gourd	carcgyB0794
Cucsa.108160	Silver-seed gourd	carcgyB1105
Cucsa.108160	Cucurbita maxima (Rimu)	cgycmaB0248
Cucsa.108160	Cucurbita maxima (Rimu)	cgycmaB0251
Cucsa.108160	Cucurbita moschata (Rifu)	cgycmoB0247
Cucsa.108160	Cucurbita moschata (Rifu)	cgycmoB0250
Cucsa.108160	Melon (DHL92) v3.5.1	cgymeB142
Cucsa.108160	Watermelon (Charleston Gray)	cgywcgB152
Cucsa.108160	Cucurbita pepo (Zucchini)	cgycpeB0241
Cucsa.108160	Cucurbita pepo (Zucchini)	cgycpeB0244