Lsi05G009950 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G009950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 17394200 .. 17394475 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTCACTTTCTTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAAGATGATCAACAAAAATGGTCCATGCTGCTTCAACAATCGCTGCAGAGGGCACCGGTACCTCCGTCCGGCCGAGACGACGGCACCAACATTCCGGTACCGCTCGGGCAACAGGCCTTCGCCGGAAAGTTCATGGCGCCACCGGCCTACGCCTATCCAGATCATCTAATGGTTCCTTCTGGTGTGGCCTTTTGA

mRNA sequence

ATGAAGATCCAATTCACTTTCTTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAAGATGATCAACAAAAATGGTCCATGCTGCTTCAACAATCGCTGCAGAGGGCACCGGTACCTCCGTCCGGCCGAGACGACGGCACCAACATTCCGGTACCGCTCGGGCAACAGGCCTTCGCCGGAAAGTTCATGGCGCCACCGGCCTACGCCTATCCAGATCATCTAATGGTTCCTTCTGGTGTGGCCTTTTGA

Coding sequence (CDS)

ATGAAGATCCAATTCACTTTCTTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAAGATGATCAACAAAAATGGTCCATGCTGCTTCAACAATCGCTGCAGAGGGCACCGGTACCTCCGTCCGGCCGAGACGACGGCACCAACATTCCGGTACCGCTCGGGCAACAGGCCTTCGCCGGAAAGTTCATGGCGCCACCGGCCTACGCCTATCCAGATCATCTAATGGTTCCTTCTGGTGTGGCCTTTTGA

Protein sequence

MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSMLLQQSLQRAPVPPSGRDDGTNIPVPLGQQAFAGKFMAPPAYAYPDHLMVPSGVAF
Homology
[Close]
BLAST of Lsi05G009950 vs. TrEMBL
Match: A0A0A0LCY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-21
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSM---LLQQSLQRAPVPPSGRDDGTN 60
          MKIQF+F LAIL+LLAN H LQSCRT+KDDQQ WS+   LLQQSLQR PVPPS ++  TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGQQAFAGKFMAPPAYAY 80
          IPVP+GQ+AFAGK  A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

[Close]
BLAST of Lsi05G009950 vs. NCBI nr
Match: gi|700202793|gb|KGN57926.1| (hypothetical protein Csa_3G393150 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 5.8e-21
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1  MKIQFTFFLAILLLLANAHQLQSCRTMKDDQQKWSM---LLQQSLQRAPVPPSGRDDGTN 60
          MKIQF+F LAIL+LLAN H LQSCRT+KDDQQ WS+   LLQQSLQR PVPPS ++  TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGQQAFAGKFMAPPAYAY 80
          IPVP+GQ+AFAGK  A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

The following BLAST results are available for this feature:
BLAST of Lsi05G009950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G009950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCY5_CUCSA4.0e-2169.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1[more]
BLAST of Lsi05G009950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G009950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202793|gb|KGN57926.1|5.8e-2169.51hypothetical protein Csa_3G393150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009950.1Lsi05G009950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G009950ClCG07G000830Watermelon (Charleston Gray)lsiwcgB348
Lsi05G009950Cla97C07G129120Watermelon (97103) v2lsiwmbB346
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G009950Watermelon (97103) v2lsiwmbB336
Lsi05G009950Watermelon (97103) v2lsiwmbB342
Lsi05G009950Wax gourdlsiwgoB459
Lsi05G009950Bottle gourd (USVL1VR-Ls)lsilsiB012
Lsi05G009950Bottle gourd (USVL1VR-Ls)lsilsiB157
Lsi05G009950Cucurbita maxima (Rimu)cmalsiB247
Lsi05G009950Cucurbita maxima (Rimu)cmalsiB486
Lsi05G009950Cucurbita maxima (Rimu)cmalsiB585
Lsi05G009950Cucurbita maxima (Rimu)cmalsiB840
Lsi05G009950Cucurbita moschata (Rifu)cmolsiB235
Lsi05G009950Cucurbita moschata (Rifu)cmolsiB470
Lsi05G009950Cucurbita moschata (Rifu)cmolsiB565
Lsi05G009950Cucurbita pepo (Zucchini)cpelsiB209
Lsi05G009950Cucurbita pepo (Zucchini)cpelsiB269
Lsi05G009950Cucurbita pepo (Zucchini)cpelsiB616
Lsi05G009950Cucurbita pepo (Zucchini)cpelsiB716
Lsi05G009950Wild cucumber (PI 183967)cpilsiB127
Lsi05G009950Wild cucumber (PI 183967)cpilsiB213
Lsi05G009950Cucumber (Chinese Long) v2culsiB129
Lsi05G009950Cucumber (Chinese Long) v2culsiB215
Lsi05G009950Melon (DHL92) v3.5.1lsimeB364
Lsi05G009950Melon (DHL92) v3.5.1lsimeB382
Lsi05G009950Watermelon (Charleston Gray)lsiwcgB344
Lsi05G009950Watermelon (97103) v1lsiwmB356
Lsi05G009950Watermelon (97103) v1lsiwmB367
Lsi05G009950Watermelon (97103) v1lsiwmB383
Lsi05G009950Cucumber (Gy14) v2cgyblsiB117
Lsi05G009950Cucumber (Gy14) v2cgyblsiB206
Lsi05G009950Melon (DHL92) v3.6.1lsimedB379
Lsi05G009950Melon (DHL92) v3.6.1lsimedB398
Lsi05G009950Silver-seed gourdcarlsiB211
Lsi05G009950Silver-seed gourdcarlsiB689
Lsi05G009950Silver-seed gourdcarlsiB717
Lsi05G009950Silver-seed gourdcarlsiB879
Lsi05G009950Cucumber (Chinese Long) v3cuclsiB140
Lsi05G009950Cucumber (Chinese Long) v3cuclsiB234