Lsi05G009390 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G009390
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 16523961 .. 16527131 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTGTTGGGCTCGAACTCTCTTCACTGTCAACTACTGGCTGTTCCAGAAAAAGAAAACAAGCAAATGTGGTGAAGAATCGCAGCAATGTCATCCATTGTTATGCTTTGAGGATTTTATGCATGTCGCATTCGCAAGAATCAAGAAGGAAAAGAGACAAGATGCACTCAAAATGCAACCCATTTTTGTTTGTCTTCTTCCCAATCCCAGCTCTCTCTCTCTCTCTGTTTCTTTAATAATCATAAAAATATTTTGTTCCCATATCCCAAAACCCCAGATTGTCGAACACTTAGCCGTTTCAGATGAAACTGCCATACAGAGAGAGCCAACAATGCCAGCCCATCTCAGATGGAACGCTCAAGGTGGGCTTCACATGCCTCCCAATGCCATATCACTGGTCAGTGCTTATCGAATCCATTGTTTTTGTTATTACCGACACAGCATCCTTTCATTCTTTTTGTCGTTTCCTTAAGCATTTTGTGGTTTAATAGTTGCGTATACAATTTCTGATTTGCCATCCTGAATGTTAATGTAGATACATACCTCTTCATTCTTTGAATCTAAGATTTATGCTGAAATTATACTGTCTTCAATAACATTTAATGATATATAGACAAGCCCAAAACTAGATTTTGTTGTCTTCATTCACTCTTGACTACCTAATAAGTATATCTAGAAACATTTTTATATGAAGTGGCATTAACACTATATAGGCTTCGTGATTACATCATCTTTGTTTGAAAATGAAATCAATCATATCAACCTCCAGATTTGCAATGTTTCAACTAGATATTTTGGGTAATTGGTCTTTAGTTGATTACAATTCATATGTCTCGATCAATGTGCTAATCAGCACTATGGGGGAGAACAGATTCGATAGGGAAGCTGAGAATAAAAGTGCACCAAATCCCACAGTCACTCCATAGATGTATTGAGAATATATTAAATGAATTGGACTTAACATCTGAAACTTTTGGGTGATTTGATTTGGGATGAAAAGAAATTAGAAGTTCAGATTCCTAAATTATCATTTTTCTTCTTTTATTTGATTTGAACAAAGAGTGTTGAAAGTGTATTAAACTTGATAAATCTTCTGACAACTTAGATTCCCTTTTGATAAGAATTTTATTTTTGTTAACATCATACTTGTTTTTTTTTTACTATTTTATTATTTTACCTATGGTTTTCAAAACATTAAAAGTTTTAGCCAAATTAAAAAAAAAAAAGTTATTAAAAACTGCATTTTCTAGCTTTCCAAAATTAGCTTGGATTTTAAAAATAAATTTAAAAGAAGATTACAAAACAAAGAAACTCATGAATGAAACTATGTTTGCAAAATTAATTTTCAAGAACCAATAATGTACCCTAACCTTTAAATTTAGTGATTATTTAAGAGGAGTCGAATTGTATAATCACACTTGGAGAAAGGGGTCCATAGCCTTTTGACTCACAAGAGTGTAGAAAATGTTGGTTCTAGAATGTAGGGTCGTTTGGTGACCATTTGGTTTTTTAAAATTATGTTTGTTTCACACAATTTCTTAATCATATGGTTTTCAAATTTTTTTGACAAACATTTGAATTCTTAGCTAAATTCCAAAAACAAAAATAAATTTTTAAAAGGATTATTTTCAAATATAGAAACATGAGTCAAACTATTTATAAATAAAGAAAAATTTTACTATCTATTAACGATTGATCTATTTGTAGATCGCTAATAGATAATAAAATAGTCAGTATATTTATAAATAGTTTGATATTTTTTATGTTTATTATAATTTTCTTTTTTAAATTTTTTTTTTGTTTAGTTTTCAAGTTTTGACTTAGATTTTAAAAATACTCATAAGATAGACAATAAAATATAAAAATCAACAGATAGAAATAGTTGTTACCAAACGAGTTCTTAGTTTAAGCTTTACCGTTGTTAGTAGCACCATCTCCACTGGTGGATCCTTTGACTTTCTCCTCTCCATTTTGCAGGAGAAAAACTCCAAATAAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGCGAGGTACCAATTCCATTGTACTTAATAATAATAGTGAAAGGAAAGAAGTTTATTGGAGGGAATACCAGGTATTTGTTGATGCTCTTTTCCACATCTGGAAGCCTAATCTTAGGGAATATATATAAATGTATATATGTATTTGTAGGTTTTGAGAAATTCCACTTAACCCAAACACTTCACGTGTTTGTATGTGACACATTGTCTGCCATTGTTGCATAAGGTAGATTGTAAACAGGAAAAACTATTACAACAGAAAAACTCACAAAAACTTCCCTTCCAAACATTTCTATGTGGTTTGCAAAACACATCTCCACTATCTTATATTACTGCAACCTACAATCTACCTTATCCTATTAACTACTAGGCCAATTGTTTAGAAGCAATTTGAATCGATATTGATTGATCGAGTTGTCTCACATTAAATCGCTGTCAAAGCGGCAATGATATGGATTTTAAAGATGATGTTTTCTTTTTATTGACAGACGAAACACAGACCAAAGTTTTTGTGTTCCATGTGGTGAAGGATATACAAAAATTGACAATACAACATGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGTGGCTAGGCTAGCTAGGATTAGAAGACTCTTTCAAATAGGACCTTGGCAATGTGGTAGTTGATAGTCCAAGGATCGAAATAAGCTGCATAGTACAAACTTTTTGCTACCGTTAGAAATGTGTGCTTGATTTGTGAGTCAATGTCATTGCCATCTGAGGAGTTTTGGATCACCAGCTGCACAAGTTTCCTCATGTCTTCTTCCATCTCTGGGGGCATTTTGTTGTCTGTTTTCTCCTTATAGATACCACCGTTGGTTACCTGACAGAATAAAACAAAGCTCAATTATTATTATTATTCTTTTCTTTTTTTTGGTTGTGCTTTGGCCTACCGTAAAAGAACAGAACCTATGTTTTAGTGTTATACGAGGCCAAGGATTAAGGTGGGGGAAAAAAGGAAGGTCAATGTGTGGCAATGTAATGAATAAATTAAGGGGGAAAAAGGGATGGGGAATATAATCTTTTATTATGTGGGGTTGCAATGGGTTGTGTCTCTGTATAAAACACTCACCTTGTGCTTTTTAAAGTGACCAAGTTGATGGC

mRNA sequence

ATGACCTTGTTGGGCTCGAACTCTCTTCACTGTCAACTACTGGCTGTTCCAGAAAAAGAAAACAAGCAAATGTGGTGAAGAATCGCAGCAATGTCATCCATTGTTATGCTTTGAGGATTTTATGCATGTCGCATTCGCAAGAATCAAGAAGGAAAAGAGACAAGATGCACTCAAAATGCAACCCATTTTTGTTTGTCTTCTTCCCAATCCCAGCTCTCTCTCTCTCTCTGTTTCTTTAATAATCATAAAAATATTTTGTTCCCATATCCCAAAACCCCAGATTGTCGAACACTTAGCCGTTTCAGATGAAACTGCCATACAGAGAGAGCCAACAATGCCAGCCCATCTCAGATGGAACGCTCAAGGTGGGCTTCACATGCCTCCCAATGCCATATCACTGATTTGCAATGTTTCAACTAGATATTTTGGGAGAAAAACTCCAAATAAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGCGAGGTACCAATTCCATTGTACTTAATAATAATAGTGAAAGGAAAGAAGTTTATTGGAGGGAATACCAGGTATTTGTTGATGCTCTTTTCCACATCTGGAAGCCTAATCTTAGGGAATATATATAAATGTATATATGTATTTGTAGGTTTTGAGAAATTCCACTTAACCCAAACACTTCACGTGTTTGTATGTGACACATTGTCTGCCATTGTTGCATAAGGTAGATTGTAAACAGGAAAAACTATTACAACAGAAAAACTCACAAAAACTTCCCTTCCAAACATTTCTATGTGGTTTGCAAAACACATCTCCACTATCTTATATTACTGCAACCTACAATCTACCTTATCCTATTAACTACTAGGCCAATTGTTTAGAAGCAATTTGAATCGATATTGATTGATCGAGTTGTCTCACATTAAATCGCTGTCAAAGCGGCAATGATATGGATTTTAAAGATGATGTTTTCTTTTTATTGACAGACGAAACACAGACCAAAGTTTTTGTGTTCCATGTGGTGAAGGATATACAAAAATTGACAATACAACATGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGTGGCTAGGCTAGCTAGGATTAGAAGACTCTTTCAAATAGGACCTTGGCAATGTGGTAGTTGATAGTCCAAGGATCGAAATAAGCTGCATAGTACAAACTTTTTGCTACCGTTAGAAATGTGTGCTTGATTTGTGAGTCAATGTCATTGCCATCTGAGGAGTTTTGGATCACCAGCTGCACAAGTTTCCTCATGTCTTCTTCCATCTCTGGGGGCATTTTGTTGTCTGTTTTCTCCTTATAGATACCACCGTTGGTTACCTGACAGAATAAAACAAAGCTCAATTATTATTATTATTCTTTTCTTTTTTTTGGTTGTGCTTTGGCCTACCGTAAAAGAACAGAACCTATGTTTTAGTGTTATACGAGGCCAAGGATTAAGGTGGGGGAAAAAAGGAAGGTCAATGTGTGGCAATGTAATGAATAAATTAAGGGGGAAAAAGGGATGGGGAATATAATCTTTTATTATGTGGGGTTGCAATGGGTTGTGTCTCTGTATAAAACACTCACCTTGTGCTTTTTAAAGTGACCAAGTTGATGGC

Coding sequence (CDS)

ATGCATGTCGCATTCGCAAGAATCAAGAAGGAAAAGAGACAAGATGCACTCAAAATGCAACCCATTTTTGTTTGTCTTCTTCCCAATCCCAGCTCTCTCTCTCTCTCTGTTTCTTTAATAATCATAAAAATATTTTGTTCCCATATCCCAAAACCCCAGATTGTCGAACACTTAGCCGTTTCAGATGAAACTGCCATACAGAGAGAGCCAACAATGCCAGCCCATCTCAGATGGAACGCTCAAGGTGGGCTTCACATGCCTCCCAATGCCATATCACTGATTTGCAATGTTTCAACTAGATATTTTGGGAGAAAAACTCCAAATAAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGCGAGGTACCAATTCCATTGTACTTAATAATAATAGTGAAAGGAAAGAAGTTTATTGGAGGGAATACCAGGTATTTGTTGATGCTCTTTTCCACATCTGGAAGCCTAATCTTAGGGAATATATATAA

Protein sequence

MHVAFARIKKEKRQDALKMQPIFVCLLPNPSSLSLSVSLIIIKIFCSHIPKPQIVEHLAVSDETAIQREPTMPAHLRWNAQGGLHMPPNAISLICNVSTRYFGRKTPNKKGTSKLNHKPSQPNCVLRGTNSIVLNNNSERKEVYWREYQVFVDALFHIWKPNLREYI
Homology
[Close]
BLAST of Lsi05G009390 vs. TrEMBL
Match: A0A0A0KGC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410640 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 53  QIVEHLAVSDETAIQREPTMPAHLRWNAQGGLHMPPNAISLICNVSTRYFGRKTPNKKGT 112
           +IVEHLAVS ETA QR+PTMP H RWN+  GLHMPP +ISL+  +       K  ++  T
Sbjct: 59  EIVEHLAVSIETATQRQPTMPTHFRWNSHCGLHMPPISISLLEKLQI-----KKAHRSST 118

Query: 113 SKLNHKPSQPNCVLRGTNSIVLNNNSERKEVYWREYQVFVDALFHIWKPNLREYI 168
           + L +       ++     + L    + K+      +   +A+FHI KPNL+EYI
Sbjct: 119 TNLVNLTVYWEVLI----PLYLIVKMKGKKFVGGNTKDMFNAIFHIRKPNLKEYI 164

[Close]
BLAST of Lsi05G009390 vs. NCBI nr
Match: gi|700192705|gb|KGN47909.1| (hypothetical protein Csa_6G410640 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 4.5e-11
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 53  QIVEHLAVSDETAIQREPTMPAHLRWNAQGGLHMPPNAISLICNVSTRYFGRKTPNKKGT 112
           +IVEHLAVS ETA QR+PTMP H RWN+  GLHMPP +ISL+  +       K  ++  T
Sbjct: 59  EIVEHLAVSIETATQRQPTMPTHFRWNSHCGLHMPPISISLLEKLQI-----KKAHRSST 118

Query: 113 SKLNHKPSQPNCVLRGTNSIVLNNNSERKEVYWREYQVFVDALFHIWKPNLREYI 168
           + L +       ++     + L    + K+      +   +A+FHI KPNL+EYI
Sbjct: 119 TNLVNLTVYWEVLI----PLYLIVKMKGKKFVGGNTKDMFNAIFHIRKPNLKEYI 164

The following BLAST results are available for this feature:
BLAST of Lsi05G009390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G009390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGC8_CUCSA3.1e-1140.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410640 PE=4 SV=1[more]
BLAST of Lsi05G009390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G009390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192705|gb|KGN47909.1|4.5e-1140.00hypothetical protein Csa_6G410640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009390.1Lsi05G009390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G009390Csa6G410640Cucumber (Chinese Long) v2culsiB464
Lsi05G009390ClCG07G000320Watermelon (Charleston Gray)lsiwcgB348
Lsi05G009390Bhi05G000234Wax gourdlsiwgoB459
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G009390Cucumber (Chinese Long) v3cuclsiB488
Lsi05G009390Cucumber (Chinese Long) v3cuclsiB493
Lsi05G009390Cucumber (Chinese Long) v3cuclsiB496
Lsi05G009390Watermelon (97103) v2lsiwmbB346
Lsi05G009390Watermelon (97103) v2lsiwmbB351
Lsi05G009390Wax gourdlsiwgoB470
Lsi05G009390Bottle gourd (USVL1VR-Ls)lsilsiB012
Lsi05G009390Bottle gourd (USVL1VR-Ls)lsilsiB108
Lsi05G009390Cucumber (Gy14) v1cgylsiB313
Lsi05G009390Cucurbita maxima (Rimu)cmalsiB354
Lsi05G009390Cucurbita maxima (Rimu)cmalsiB357
Lsi05G009390Cucurbita maxima (Rimu)cmalsiB491
Lsi05G009390Cucurbita maxima (Rimu)cmalsiB585
Lsi05G009390Cucurbita maxima (Rimu)cmalsiB840
Lsi05G009390Cucurbita maxima (Rimu)cmalsiB841
Lsi05G009390Cucurbita moschata (Rifu)cmolsiB343
Lsi05G009390Cucurbita moschata (Rifu)cmolsiB346
Lsi05G009390Cucurbita moschata (Rifu)cmolsiB474
Lsi05G009390Cucurbita moschata (Rifu)cmolsiB565
Lsi05G009390Cucurbita moschata (Rifu)cmolsiB825
Lsi05G009390Cucurbita moschata (Rifu)cmolsiB826
Lsi05G009390Cucurbita pepo (Zucchini)cpelsiB119
Lsi05G009390Cucurbita pepo (Zucchini)cpelsiB123
Lsi05G009390Cucurbita pepo (Zucchini)cpelsiB211
Lsi05G009390Cucurbita pepo (Zucchini)cpelsiB269
Lsi05G009390Cucurbita pepo (Zucchini)cpelsiB272
Lsi05G009390Cucurbita pepo (Zucchini)cpelsiB510
Lsi05G009390Cucurbita pepo (Zucchini)cpelsiB616
Lsi05G009390Cucurbita pepo (Zucchini)cpelsiB716
Lsi05G009390Melon (DHL92) v3.5.1lsimeB349
Lsi05G009390Wild cucumber (PI 183967)cpilsiB472
Lsi05G009390Wild cucumber (PI 183967)cpilsiB473
Lsi05G009390Cucumber (Chinese Long) v2culsiB459
Lsi05G009390Cucumber (Chinese Long) v2culsiB465
Lsi05G009390Melon (DHL92) v3.5.1lsimeB361
Lsi05G009390Melon (DHL92) v3.5.1lsimeB362
Lsi05G009390Melon (DHL92) v3.5.1lsimeB367
Lsi05G009390Watermelon (Charleston Gray)lsiwcgB312
Lsi05G009390Watermelon (Charleston Gray)lsiwcgB344
Lsi05G009390Watermelon (97103) v1lsiwmB345
Lsi05G009390Watermelon (97103) v1lsiwmB356
Lsi05G009390Watermelon (97103) v1lsiwmB383
Lsi05G009390Cucumber (Gy14) v2cgyblsiB427
Lsi05G009390Cucumber (Gy14) v2cgyblsiB432
Lsi05G009390Melon (DHL92) v3.6.1lsimedB376
Lsi05G009390Melon (DHL92) v3.6.1lsimedB377
Lsi05G009390Melon (DHL92) v3.6.1lsimedB383
Lsi05G009390Silver-seed gourdcarlsiB100
Lsi05G009390Silver-seed gourdcarlsiB691