Lsi05G008940 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G008940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Plasma membrane isoform 4
Location	chr05 : 15607798 .. 15613280 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTATTTTTTCGTTGGTGTGGTCGGACTCCCACTTAGCTCTGGCAAAGTCGCAATCGTGTACTTTCTAGTTGCCTTGATCGAGTAGTTTTTTCCTCTGAACATACGTCGAGGGTGCTGTCATGTGGGCGGAGATTCTCTGTGGTTTCTTAGCATTTAGAGTGCTCAGGCAATTCTTTTTTCCAAGAGATGAATTGGAGATCGAGACCATTGACTCTAATGCCCTATTCGCTGCTGCGTCGAGGTACTCTTCATTTCATTCCAGCTTCGAATTCTCATCAAAGAATTTCAATTATGGGAAGGAACAATGTTTGTAATCTAATGCTAAATGTTGTCTTCTTTCTTCTTTTGGTAGGCTAGAGAAGCTTTATGGTGGAAAGACTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGTTTGCGACAGAGTATTGATATGGTGCTTGTAACGAAAGGGTAGATTTTTCGCATTTCAAATTTTGATTTGTTCTCTTTTAATTATCAAGTCTACCAGTGAAAGTAGGAAGGAAATGAACTTAATCGAGAATTTTGGAATTTGGCAGATGCTTAGTATTCGCCTTGTAACCTACAGAGAGTTAGAGTTCATATCTCTATACACTACAATGCTATTTCAGCTAAAAGAAAAATGCATGTAGAGAGAATTTGTAACAGACTTCGCTTGTGATCGTTATGATTGCTCAATCCTTTCCAGTAGAACCTTTTGGAATAATGTCACTCCTGAGGTGTAAAGTAACTAACCAAAATATCCACAAGAAGCTATGAGTTTCATTAACATCTCCCCTCAAAGAAGTGGGTAGGGAGATTGTACCAAGTTTGATTCACAAGTAAGAAAACAGCGTAAGAGATAAATACTTGGTGAGAGTGAGACGGTTAGCAAGTTGATTGGAAAAAGGTACATAATCAATATCTAACAAATCATTGAGGCCTTGATCATGAACATAGTGCATCAATTTCAATATGCTTTGTTTTAACCGTCTAATTCTTTGGTGTATTAAAAAAGAATTTCCACACTCTTCACCTAGTCAAGAAAGGCTTCTAAATCGATCTTTCAATTAAAAGAGAGTACGTCGATCTTCATTTGAAATTCTCTTGATATATTCTCACGTTCTTGGTATGGTTTTCTCTTCCCATTTCTGTTCGTCTAGGTATCTATAGGTTACATCCCCCTTATCACTTGAAACATCAGAATCTTGCTTGTTCCTCATTATTTAGTCCAATTTCCTCTACATTTGTAATTTCCCGAACAAAGTTATCATAGATTCTAGGCCTTTTCTTCGCAAAAAGCCTTAAGGATTACCTAGACCCTTTGCTGAAATTATTACTATCCTTCTACCATTTCTACTCTTTCAGAATTAAAAAGCCTTCCTATCCACTCAAACCTTCCCCATACTAAGCTTACATCATAGAGAGAGGGAGAGAGAAGTTTACATATAATCTGCTGTAACTTGCTAATGGAGAAAAAGCCACTGGCCACTCAATGAGCAATGATGTTCAATAGAAGGTTCCAATCATAAAGTTCATGCTGATAGCCTCCCCCACCCCGACAAAAGAACCGTGATTGCTACCATTGCACTTGTCACATTGGTATTCTTCTTTGCATCTGTTCATTTCCCTGAAAATACTGAGAATAATATATGAAATGTCAAGTCTCATTGAAACACGTGATGTTTGTTAATTCTGGCATTTTCTTTTTTCCCTTATCTCTTATGCCTTCAATTATTTAAATCCATACAGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAAAAGTCAGAGATTCTTCCTGATCCGGTAAGTTCCTTTCAGTTACCAAATTGTTATGAGCTTTCTCTAATATGATGCATGCAATCAGAAGTATTCTAAAGCTAATTTACTTCATTTATCTATTACTAACTTGTGAGACTATTTTCATTTTGACTGGCTCCCAATTCCCATATGGAGCTCTTGATATTAACTTTAACTGGAACATTTTGATTAAGTCAGAAAGACCTGGGTTATTCACTTGCAGGTTGCTTGCTGTTATCAATTGAGTTAGTTTCTTATTAATAAAATTTTCTTTCCATTACTTTATGCTCATGTTTCTGGTGATTGTTCTGTAGAGCTCATTCATATTAAATCCTGTTTGCATGTCTATTCTGTTGCATTTTCAGTTTAACTTTAAACCATCGAGTTAATTACCGTTATCTTTACTATAATAATTGAACTTTGTGGCAGAGAGTTTGAAAAGTTTCATGAAGCATGTCAGTGGTGATTGGATGAAATGGTATTTATCAATAAGACTTACTTAGTGTTCTCTTTTCTTTGTTTGTTTCATTGGACTTTGAGCATTAGGCTCATTTCATTAATTCAATGAAAAAGTATTGTTTCTGTTTAAAAAAAATATATAAGACTTACTTTGTGTACTGACCCCTAATAGCCCTAATTGATATGAAATGGATCTTTCAAGTGTATCAATTGTATAGTCTGAGGATTTACTACAGAAAATTAGCCATGTGACCACAGGAATTTGTTGGTAGGGTGTAGTTTACTGGTGGAAGATCCTTATCCTTGAATTCACTACAGAAGTTAAGAGGTTCAAAATCCTCTGGATCACTTCTCCTTTGCGAGTTATTCCCTCACTTTTACCATTTGTCTGATAAGGGCTACATTCTGTGGCTTCTGTCCTAGCGTCTTCCCCGTCGCTTTCTTTGGAGTGAGAGTTCCTTGGCGTCTTAATTTTAATGGAATAATACTTGTATTCCAATAATACTCATAATGTTAGGTGATAAAAATTTATTGTTGTATATTGATATGTGCAATATAGGTTTTATATAGAAGAGTGACCCATTACCAATAAGGAAAGAGAACAAAAATAAAGAAAGGAAGATATTAACAATGAATATTTACACATAAATATGCCTAAATAATATAAATTTCAACAAATACATTCATAAGATACATAACCTTTATCTTCTTATATAAGAGAAAGACGCTGAATAGATAAAACGAAAGAATCGGAATAAGAATGATATAAAATCATTAATGCATGATTTCAACTAAGTAACATATTTACAACCAACACTCTCCCCAAGCTAATTTAAATATATCTTCCATTGCCAGCATTTCAATCATTATGTCGAATTTTACTTTTGGTAGTCCTTTAGTCAACACATCGATAGTTTGCTCTATACTAGGGAAATAAGGAATACATATCACCCTTGATTCAATTTTCATCTTTGTAAAGTGTTTGTCAACCGCAATATGTTCTTATCATGTAGAATTGGCTTATGGGCGGTAGAGATAATAACCTTGTTATCGCAGGACACCCGTAAGATTAGGACTTGACATTGAAGAATTAGTAAGATCAGGGGAAATAACATTTGGGGAAAGGCAGAAACATCCCAAAAATTATCACTTCTAAATTTAGCTTCTCCCCGGAAGATAATTTTTGGGTAAAAAAAGGTTGGTTTTTCAAAAACAACACATACCCTCATATAAGCACTAGGAATATATCATACCCTCATATGATAGTTCTTTGTTTTGTTGGTTTGTGGATCAAAACATTTATACCCCTTTTTGCTAGAAGCATAGCCCAAGAAAATACATTTAATGGCTTGGTGATCAAATTTTCACCGAAGAGAACTAGGAATATGCACATAACTAGTAAACCCAAATACTTTGATAGGTAAATTAGAGTACAAACGAGTTGTCGGAAAAAATATCTTTTAAAACAACAAGTGTAGTTTTAAAATTCAAAACTTTAGAAGGCATTTAATTTATTATATAGAAGCACAAACACGGGTACAGATACGATAGGATACGATGATACATCAATTTCTGAAAAACTAGGATATAGATCCGTTGATGATACACTGTTTTCTTGATTTTTTTCTAGGATATATGTAAATTTAACATAAAGATACTAAATGCAATCCACTAAAAAGTATTAAATGTCAAGTTAATGATAATAATATAAAATAAAATACAAACACTAAAATACAATATAAAAAGCAACATCAGAGATATTGAAATGTAATAGTCAATAGAACAAAGTATAAAAGGTTGGTGGCGCTTTGGAGTTAGATCGATTAGAGAAGAAGAAGATTAAATGGAGAAATATGAAGATAAATGAAGAACTTTGTTAAATTGTTGAAGATATTCAAGTGGGTTTTTAGATGAGCGGCTTTTCTTTTTTCTTTAAAAAAATTCACGTATCTGGAAGGGGACATGCACATTTGAAATTTTTTTAAAAAAAATACGCGTACGCTAAATCGCTTATTAGATACGTATCTGGGAAGTATCTGGAAAGTATCTATCTGAGAATATTTGTATTTGATACATATCTAATACTGATTCTCTGCCTCATATGAAGCATCTGTGATGTATAGGGAAGTACTGTTTTGCCCATGAGTACTTCAGGATGTTCATTGAAAACATTATGGCCCTAACATTTAGCAAATGTTGTTCAACAATATCATTTTGTTGAAGGGTATCTCGACAAGTGGATTGGTGAACAATGCCTTTATTTCTAAATACCTCACTCTAATGTACATTGAAATGTTTAGTTTCATATCCAGAATGCAAGATTCCTATTTTTTTATTTGAAATTGGGTTTTGGTCCTATTGTAGAAACATGCAAAACATTCTTTATTTCTGATTTTTTTTTGGTTGGTAAAAAAACCTAAGGTAAATGAATGTGATCATTTTTTAAAGTCACAGACCACGGGTAAAAAAACCAAAGGTAAATTGGGTTTTGGTCCTAGTATAAACATTCTTTATTTCTGATTTTTTTCTGTTTTTTTTGGTTAGTAAAAAATTCTAAGGTAAATGAGGCCTAGTATTTGTTTTTGTAATATGAAGGAGAGTATGTGTGAAAGAAAGAAGATGAACTAGTTATATGATTAGATGCTCCAGAATCGTTAATGCATGGAGACAAATTGTAACAAGAGAAGACTTGAGAATGATTACCTTTGTAGGTCTGATTTAACAGCCAACAATGACAAAACATGGCTTAGGAAGTGTCAGTATTGTGAACTCCTTTGAATCTCATGATTCCTCTGAAATTGTGACAAATCACAAACTTCAAGGTCACAGTTTTCTCCAATGGAGTCAATCGGTTTTCATGCATACCGTATGAATCTCTAAAAGAGTTTCTAAAAAAAAATAAAAAAAAATAAAAAATAAGAAACAAGTGAGATATAGAAATGATTTATATCATGTGTTTAATTTTAAATACAGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATATTTTGAGCAGAGAGGAGTTGCACTGCCAGAAGGATATTTATCGTGGAAAGTTCTGGTTCCCAACCCAAAATTCCGGTATGTAACGGATGATTCTCTTTTTATGCTTTTTGACGATGGACTTGTTCCTTACAGCAAAAGTTAA

mRNA sequence

ATGCAATTATTTTTTCGTTGGTGTGGTCGGACTCCCACTTAGCTCTGGCAAAGTCGCAATCGTGTACTTTCTAGTTGCCTTGATCGAGTAGTTTTTTCCTCTGAACATACGTCGAGGGTGCTGTCATGTGGGCGGAGATTCTCTGTGGTTTCTTAGCATTTAGAGTGCTCAGGCAATTCTTTTTTCCAAGAGATGAATTGGAGATCGAGACCATTGACTCTAATGCCCTATTCGCTGCTGCGTCGAGGCTAGAGAAGCTTTATGGTGGAAAGACTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGTTTGCGACAGAGTATTGATATGGTGCTTGTAACGAAAGGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAAAAGTCAGAGATTCTTCCTGATCCGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATATTTTGAGCAGAGAGGAGTTGCACTGCCAGAAGGATATTTATCGTGGAAAGTTCTGGTTCCCAACCCAAAATTCCGGTATGTAACGGATGATTCTCTTTTTATGCTTTTTGACGATGGACTTGTTCCTTACAGCAAAAGTTAA

Coding sequence (CDS)

ATGTGGGCGGAGATTCTCTGTGGTTTCTTAGCATTTAGAGTGCTCAGGCAATTCTTTTTTCCAAGAGATGAATTGGAGATCGAGACCATTGACTCTAATGCCCTATTCGCTGCTGCGTCGAGGCTAGAGAAGCTTTATGGTGGAAAGACTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGTTTGCGACAGAGTATTGATATGGTGCTTGTAACGAAAGGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAAAAGTCAGAGATTCTTCCTGATCCGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATATTTTGAGCAGAGAGGAGTTGCACTGCCAGAAGGATATTTATCGTGGAAAGTTCTGGTTCCCAACCCAAAATTCCGGTATGTAACGGATGATTCTCTTTTTATGCTTTTTGACGATGGACTTGTTCCTTACAGCAAAAGTTAA

Protein sequence

MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYVTDDSLFMLFDDGLVPYSKS

Homology

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BLAST of Lsi05G008940 vs. TrEMBL
Match: A0A0A0LKG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G915150 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 9.5e-80
Identity = 146/154 (94.81%), Postives = 151/154 (98.05%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MWAEILCGFLAFRVLR+FFFPRDE+EIETIDS+ALFA ASRLEKLYGGK FVGLRIPDAD
Sbjct: 1   MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSSALFAVASRLEKLYGGKAFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
           VSILESYFEQRGVALPEGYLSWKVL+PNPKFR +
Sbjct: 121 VSILESYFEQRGVALPEGYLSWKVLLPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. TrEMBL
Match: A0A061F6L3_THECC (Plasma membrane isoform 2 OS=Theobroma cacao GN=TCM_025518 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.7e-57
Identity = 104/154 (67.53%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI+CG + +R+ R+FF+  D LE+ET DSNA+F+ A+RLEKLYGGK +VGL IPDAD
Sbjct: 1   MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEKLYGGKVYVGLHIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+IDMVLVTKGEA VI VKNL+GFVS+S DGSW CEG G  ++E  PDPVAE ++ 
Sbjct: 61  TGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGVGSHRAERHPDPVAEAKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            S+LESY EQRGVALPEGY S+KV++PNPKFR +
Sbjct: 121 ASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. TrEMBL
Match: A0A061EYI0_THECC (Plasma membrane isoform 1 OS=Theobroma cacao GN=TCM_025518 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.7e-57
Identity = 104/154 (67.53%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI+CG + +R+ R+FF+  D LE+ET DSNA+F+ A+RLEKLYGGK +VGL IPDAD
Sbjct: 1   MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEKLYGGKVYVGLHIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+IDMVLVTKGEA VI VKNL+GFVS+S DGSW CEG G  ++E  PDPVAE ++ 
Sbjct: 61  TGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGVGSHRAERHPDPVAEAKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            S+LESY EQRGVALPEGY S+KV++PNPKFR +
Sbjct: 121 ASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. TrEMBL
Match: A0A061EZD8_THECC (Plasma membrane isoform 4 OS=Theobroma cacao GN=TCM_025518 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.7e-57
Identity = 104/154 (67.53%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI+CG + +R+ R+FF+  D LE+ET DSNA+F+ A+RLEKLYGGK +VGL IPDAD
Sbjct: 1   MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEKLYGGKVYVGLHIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+IDMVLVTKGEA VI VKNL+GFVS+S DGSW CEG G  ++E  PDPVAE ++ 
Sbjct: 61  TGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGVGSHRAERHPDPVAEAKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            S+LESY EQRGVALPEGY S+KV++PNPKFR +
Sbjct: 121 ASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. TrEMBL
Match: A0A067E062_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024593mg PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-55
Identity = 100/154 (64.94%), Postives = 128/154 (83.12%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW +ILCG + +++ ++ F+  D L++ET DSNA+F+ A+RLEKLY GK +VGLRIPD D
Sbjct: 1   MWVQILCGLVIYKICKKLFYDDDVLDVETSDSNAIFSVAARLEKLYKGKAYVGLRIPDPD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+ID+VL+TKGEAVVI VKNLSGFV+++ADGSW+CE  GR +S   PDPVAE ++ 
Sbjct: 61  TGSRQNIDIVLITKGEAVVISVKNLSGFVTVNADGSWVCEAVGRHRSAAHPDPVAEAKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            SILESY EQRGVALPEGYLS+KV++PNPKFR +
Sbjct: 121 ASILESYLEQRGVALPEGYLSYKVIIPNPKFRVI 154

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BLAST of Lsi05G008940 vs. TAIR10
Match: AT1G65020.1 (AT1G65020.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 201.1 bits (510), Expect = 5.7e-52
Identity = 97/176 (55.11%), Postives = 129/176 (73.30%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI+CG + ++++R+FF+  +  ++ET DS ALF+ A RLEKLYGGK +VGLRIPDAD
Sbjct: 1   MWIEIICGLVIYKLVRRFFYDDEFSDVETSDSTALFSVAHRLEKLYGGKAYVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           T  RQ ID+VLVTKG+ VVI VKNLSG V++++DGSW+CEG     +E  PDP+AE ++ 
Sbjct: 61  TASRQDIDVVLVTKGDVVVISVKNLSGIVTVTSDGSWVCEGGKHHTTETFPDPLAEVKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV-TDDSLFMLFDD--GLVPYSKS 174
            S+LESY EQRGV L EG +S KV++PNP FR +    S  + ++D   L P SKS
Sbjct: 121 ASVLESYLEQRGVTLLEGNVSCKVVIPNPSFRTIHAFPSEVITYEDWQQLKPVSKS 176

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BLAST of Lsi05G008940 vs. NCBI nr
Match: gi|449461233|ref|XP_004148346.1| (PREDICTED: uncharacterized protein LOC101206635 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 1.4e-79
Identity = 146/154 (94.81%), Postives = 151/154 (98.05%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MWAEILCGFLAFRVLR+FFFPRDE+EIETIDS+ALFA ASRLEKLYGGK FVGLRIPDAD
Sbjct: 1   MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSSALFAVASRLEKLYGGKAFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
           VSILESYFEQRGVALPEGYLSWKVL+PNPKFR +
Sbjct: 121 VSILESYFEQRGVALPEGYLSWKVLLPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. NCBI nr
Match: gi|590639340|ref|XP_007029642.1| (Plasma membrane isoform 2 [Theobroma cacao])

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 104/154 (67.53%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI+CG + +R+ R+FF+  D LE+ET DSNA+F+ A+RLEKLYGGK +VGL IPDAD
Sbjct: 1   MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEKLYGGKVYVGLHIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+IDMVLVTKGEA VI VKNL+GFVS+S DGSW CEG G  ++E  PDPVAE ++ 
Sbjct: 61  TGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGVGSHRAERHPDPVAEAKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            S+LESY EQRGVALPEGY S+KV++PNPKFR +
Sbjct: 121 ASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. NCBI nr
Match: gi|590639336|ref|XP_007029641.1| (Plasma membrane isoform 1 [Theobroma cacao])

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 104/154 (67.53%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI+CG + +R+ R+FF+  D LE+ET DSNA+F+ A+RLEKLYGGK +VGL IPDAD
Sbjct: 1   MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEKLYGGKVYVGLHIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+IDMVLVTKGEA VI VKNL+GFVS+S DGSW CEG G  ++E  PDPVAE ++ 
Sbjct: 61  TGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGVGSHRAERHPDPVAEAKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            S+LESY EQRGVALPEGY S+KV++PNPKFR +
Sbjct: 121 ASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. NCBI nr
Match: gi|590639347|ref|XP_007029644.1| (Plasma membrane isoform 4 [Theobroma cacao])

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 104/154 (67.53%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI+CG + +R+ R+FF+  D LE+ET DSNA+F+ A+RLEKLYGGK +VGL IPDAD
Sbjct: 1   MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEKLYGGKVYVGLHIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+IDMVLVTKGEA VI VKNL+GFVS+S DGSW CEG G  ++E  PDPVAE ++ 
Sbjct: 61  TGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGVGSHRAERHPDPVAEAKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            S+LESY EQRGVALPEGY S+KV++PNPKFR +
Sbjct: 121 ASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. NCBI nr
Match: gi|641828066|gb|KDO47230.1| (hypothetical protein CISIN_1g024593mg [Citrus sinensis])

HSP 1 Score: 222.6 bits (566), Expect = 5.2e-55
Identity = 100/154 (64.94%), Postives = 128/154 (83.12%), Query Frame = 1


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW +ILCG + +++ ++ F+  D L++ET DSNA+F+ A+RLEKLY GK +VGLRIPD D
Sbjct: 1   MWVQILCGLVIYKICKKLFYDDDVLDVETSDSNAIFSVAARLEKLYKGKAYVGLRIPDPD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+ID+VL+TKGEAVVI VKNLSGFV+++ADGSW+CE  GR +S   PDPVAE ++ 
Sbjct: 61  TGSRQNIDIVLITKGEAVVISVKNLSGFVTVNADGSWVCEAVGRHRSAAHPDPVAEAKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            SILESY EQRGVALPEGYLS+KV++PNPKFR +
Sbjct: 121 ASILESYLEQRGVALPEGYLSYKVIIPNPKFRVI 154

The following BLAST results are available for this feature:

BLAST of Lsi05G008940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G008940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKG9_CUCSA	9.5e-80	94.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G915150 PE=4 SV=1	[more]
A0A061F6L3_THECC	8.7e-57	67.53	Plasma membrane isoform 2 OS=Theobroma cacao GN=TCM_025518 PE=4 SV=1	[more]
A0A061EYI0_THECC	8.7e-57	67.53	Plasma membrane isoform 1 OS=Theobroma cacao GN=TCM_025518 PE=4 SV=1	[more]
A0A061EZD8_THECC	8.7e-57	67.53	Plasma membrane isoform 4 OS=Theobroma cacao GN=TCM_025518 PE=4 SV=1	[more]
A0A067E062_CITSI	3.6e-55	64.94	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024593mg PE=4 SV=1	[more]

BLAST of Lsi05G008940 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65020.1	5.7e-52	55.11	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Lsi05G008940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461233\|ref\|XP_004148346.1\|	1.4e-79	94.81	PREDICTED: uncharacterized protein LOC101206635 [Cucumis sativus]	[more]
gi\|590639340\|ref\|XP_007029642.1\|	1.2e-56	67.53	Plasma membrane isoform 2 [Theobroma cacao]	[more]
gi\|590639336\|ref\|XP_007029641.1\|	1.2e-56	67.53	Plasma membrane isoform 1 [Theobroma cacao]	[more]
gi\|590639347\|ref\|XP_007029644.1\|	1.2e-56	67.53	Plasma membrane isoform 4 [Theobroma cacao]	[more]
gi\|641828066\|gb\|KDO47230.1\|	5.2e-55	64.94	hypothetical protein CISIN_1g024593mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011528	NERD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044464	cell part
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G008940.1	Lsi05G008940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011528	Nuclease-related domain, NERD	PFAM	PF08378	NERD	coord: 37..128 score: 4.
IPR011528	Nuclease-related domain, NERD	PROFILE	PS50965	NERD	coord: 30..147 score: 16
None	No IPR available	PANTHER	PTHR35287	FAMILY NOT NAMED	coord: 2..161 score: 6.9
None	No IPR available	PANTHER	PTHR35287:SF1	SUBFAMILY NOT NAMED	coord: 2..161 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G008940	Csa3G915150	Cucumber (Chinese Long) v2	culsiB221
Lsi05G008940	CSPI03G47690	Wild cucumber (PI 183967)	cpilsiB222
Lsi05G008940	Cucsa.314010	Cucumber (Gy14) v1	cgylsiB507
Lsi05G008940	CmaCh02G010590	Cucurbita maxima (Rimu)	cmalsiB581
Lsi05G008940	CmoCh02G010760	Cucurbita moschata (Rifu)	cmolsiB558
Lsi05G008940	ClCG09G013110	Watermelon (Charleston Gray)	lsiwcgB316
Lsi05G008940	Cla97C09G175850	Watermelon (97103) v2	lsiwmbB354
Lsi05G008940	Bhi05G000467	Wax gourd	lsiwgoB461
Lsi05G008940	Cp4.1LG05g06490	Cucurbita pepo (Zucchini)	cpelsiB623
Lsi05G008940	CsGy3G045020	Cucumber (Gy14) v2	cgyblsiB208
Lsi05G008940	Carg08419	Silver-seed gourd	carlsiB651
Lsi05G008940	CsaV3_3G050090	Cucumber (Chinese Long) v3	cuclsiB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G008940	Cucumber (Chinese Long) v3	cuclsiB488
Lsi05G008940	Wax gourd	lsiwgoB459
Lsi05G008940	Cucurbita pepo (Zucchini)	cpelsiB216
Lsi05G008940	Wild cucumber (PI 183967)	cpilsiB466
Lsi05G008940	Cucumber (Chinese Long) v2	culsiB459
Lsi05G008940	Melon (DHL92) v3.5.1	lsimeB354
Lsi05G008940	Cucumber (Gy14) v2	cgyblsiB427