Lsi05G006290 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G006290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription factor ILR3
Location	chr05 : 7768870 .. 7771113 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCTTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTTCCGGCTTCTCCTGGTCTATGAATCCGCTCAACGGCTCCTCCAATGTCAGGTTTCATTTCGTTTCAATTTTGTTCGATTTTCCTGTTCTATCCGTTCATAATCATATATTTCTGCTGACCCTGTAATCGGACTATGTGTATATGGACTTTTAATTGGGATCTAGGATTGCTACACCTATAGCTTAAAAGCAGTTTCTGTAGTTCTCTGGTCTCATCTCATCAAGAGAATATTACTTTTTCTTGCATCATCTGATTTAGAAGTTGGAAGCTTAAGACTTCGATCTTGTTACTTCGAGTTTGATAATCAGAAGATTTGTATCTGCATCTTCAATTTTCCTTTTCTCCTTAAGTTTTAGAACTAATTTATGAACTTGAAGTGTTTGCGTTTGAGAAAAGTTGAGATGCCTCGCTAGTTCTTCATGTTCTTCGATTTCTGGTCGAAGATTGTAGGTTTGAAATTTGCAGTATAAATTTATTAAATTTTATTTTATCTAACTGAGTAACTGATTCATTTTCATCCTATAGCTTATTCAAAGTCATTTTCTCTTGTTGACTAAATAAATAATAAGAAATTTCCCCTTTCAAGTATTGTTTCAAACCATTTTCCCCCTTTAACTAGGTACGTAATTGGGAAGTTCTTTTTACTCATGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATACTATGTTATAAATAACCTTAAAATGTAATTATTTTAAATAGGGAAACTTTGTATGATCTTTATTTTGAATTTTTTGAAATGTAACTTTCTCTTATGGTCTGTACTATTTTCATGTTAGATATGAAATTTTTTATTACTTTCTTTCACTCTGCTGTCTCTTATGTATATATGTATACTTCGAGGAAAGATAATTTGATCAACGTAGAGGGTCTGGCTTATTTAACCAACCTCAGGAGGAACTTGTCGTTTACCTGTCTTTCATGACTTCATTTCCTCAACTTTATTTCCCTAATTGCTTAGCTAGCATCTATGAATTGTCAATCTTTTTAATATTATTTCAACAACGAATACTACTAGTATGTTAACAGAGAGATTGCCAATGCACTTATATATACAGTTCTTCCTGTGATTGTGCCTCTTGCCTATGATATGGAACATTGACCAAAACTTTTGTTCACTGTCTTAGTGTCTTTGAACGGTATTCATTTTTTAAATATGTTATTGCATTGAGTATTAAAAAAAAAAAAAAAAATCCCTCTCTCTTCCCCCATCGGCATTTTTTTTTCTGTTATGGTGGTTGGTAGGGGGGGCTATCATTTTGCATTTACTCATTAAACTTTTTCCTCCATCTTTTACTAGCACGGAAATTGAAGGATCATTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGTAA

mRNA sequence

ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCTTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTTCCGGCTTCTCCTGGTCTATGAATCCGCTCAACGGCTCCTCCAATGATTGCTACACCTATAGCTTAAAAGCAGTTTCTGTAGTTCTCTGGTCTCATCTCATCAAGAGAATATTACTTTTTCTTGCATCATCTGATTTAGAAGTTGGAAGCTTAAGACTTCGATCTTGTTACTTCGAGTTTGATAATCAGAAGATTTTTCTTCATGTTCTTCGATTTCTGGTCGAAGATTGTAGCTTATTCAAAGTACGGAAACTTTATATGAAATTTTTTATTACTTTCTTTCACTCTGCTGTCTCTTATGTATATATGTATACTTCGAGGAAAGATAATTTGATCAACGTAGAGGAGAGATTGCCAATGCACTTATATATACAGTTCTTCCTCACGGAAATTGAAGGATCATTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGTAA

Coding sequence (CDS)

ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCTTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTTCCGGCTTCTCCTGGTCTATGAATCCGCTCAACGGCTCCTCCAATGATTGCTACACCTATAGCTTAAAAGCAGTTTCTGTAGTTCTCTGGTCTCATCTCATCAAGAGAATATTACTTTTTCTTGCATCATCTGATTTAGAAGTTGGAAGCTTAAGACTTCGATCTTGTTACTTCGAGTTTGATAATCAGAAGATTTTTCTTCATGTTCTTCGATTTCTGGTCGAAGATTGTAGCTTATTCAAAGTACGGAAACTTTATATGAAATTTTTTATTACTTTCTTTCACTCTGCTGTCTCTTATGTATATATGTATACTTCGAGGAAAGATAATTTGATCAACGTAGAGGAGAGATTGCCAATGCACTTATATATACAGTTCTTCCTCACGGAAATTGAAGGATCATTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGTAA

Protein sequence

MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSNDCYTYSLKAVSVVLWSHLIKRILLFLASSDLEVGSLRLRSCYFEFDNQKIFLHVLRFLVEDCSLFKVRKLYMKFFITFFHSAVSYVYMYTSRKDNLINVEERLPMHLYIQFFLTEIEGSLLESDGLKEPGSKKR

Homology

[Close]

BLAST of Lsi05G006290 vs. TrEMBL
Match: W9RCN9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021173 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSS 45
          MVSPE TNWLFDY L+DDIPV DANFS  +SGF+W + PLNGSS
Sbjct: 1  MVSPENTNWLFDYGLIDDIPVPDANFSVSSSGFTWPVQPLNGSS 44

[Close]

BLAST of Lsi05G006290 vs. TrEMBL
Match: B9SA09_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0181650 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPE TNWL +Y L+DDIPV DANFS P +GFSW +  LNGSSN
Sbjct: 1  MVSPENTNWLIEYGLIDDIPVPDANFSVPVTGFSWPVQTLNGSSN 45

[Close]

BLAST of Lsi05G006290 vs. TrEMBL
Match: A0A0S3SAL6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G102700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.1e-09
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVS E TNWLFDY L+DDIPV DA+F+ P+SGF+W  N LN +SN
Sbjct: 1  MVSRENTNWLFDYGLIDDIPVPDASFTVPSSGFTWPPNALNATSN 45

[Close]

BLAST of Lsi05G006290 vs. TrEMBL
Match: A0A0L9V4I1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g076700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.1e-09
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVS E TNWLFDY L+DDIPV DA+F+ P+SGF+W  N LN +SN
Sbjct: 1  MVSRENTNWLFDYGLIDDIPVPDASFTVPSSGFTWPPNALNATSN 45

[Close]

BLAST of Lsi05G006290 vs. TrEMBL
Match: A0A067KVL7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00800 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPE  NWL DY L+D+ PV DANFS P SGFSW +  LNGSS+
Sbjct: 1  MVSPENMNWLADYGLIDETPVLDANFSVPVSGFSWPVQTLNGSSD 45

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: gi|703083816|ref|XP_010092311.1| (hypothetical protein L484_021173 [Morus notabilis])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSS 45
          MVSPE TNWLFDY L+DDIPV DANFS  +SGF+W + PLNGSS
Sbjct: 1  MVSPENTNWLFDYGLIDDIPVPDANFSVSSSGFTWPVQPLNGSS 44

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: gi|255563653|ref|XP_002522828.1| (PREDICTED: transcription factor ILR3 [Ricinus communis])

HSP 1 Score: 73.2 bits (178), Expect = 5.3e-10
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPE TNWL +Y L+DDIPV DANFS P +GFSW +  LNGSSN
Sbjct: 1  MVSPENTNWLIEYGLIDDIPVPDANFSVPVTGFSWPVQTLNGSSN 45

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: gi|1012037599|ref|XP_015953562.1| (PREDICTED: transcription factor ILR3-like [Arachis duranensis])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          M S E+TNWLFDYAL+DDIPV DA F+ P+SGF+W  N +NGSSN
Sbjct: 1  MASRESTNWLFDYALIDDIPVHDATFAAPSSGFNWPSNAINGSSN 45

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: gi|1021491323|ref|XP_016188681.1| (PREDICTED: transcription factor ILR3-like [Arachis ipaensis])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          M S E+TNWLFDYAL+DDIPV DA F+ P+SGF+W  N +NGSSN
Sbjct: 1  MASRESTNWLFDYALIDDIPVHDATFAAPSSGFNWPSNAINGSSN 45

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: gi|965602723|dbj|BAT89900.1| (hypothetical protein VIGAN_06102700 [Vigna angularis var. angularis])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVS E TNWLFDY L+DDIPV DA+F+ P+SGF+W  N LN +SN
Sbjct: 1  MVSRENTNWLFDYGLIDDIPVPDASFTVPSSGFTWPPNALNATSN 45

The following BLAST results are available for this feature:

BLAST of Lsi05G006290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G006290 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RCN9_9ROSA	9.7e-11	75.00	Uncharacterized protein OS=Morus notabilis GN=L484_021173 PE=4 SV=1	[more]
B9SA09_RICCO	3.7e-10	71.11	DNA binding protein, putative OS=Ricinus communis GN=RCOM_0181650 PE=4 SV=1	[more]
A0A0S3SAL6_PHAAN	9.1e-09	66.67	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G102700 PE=...	[more]
A0A0L9V4I1_PHAAN	9.1e-09	66.67	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g076700 PE=4 SV=1	[more]
A0A067KVL7_JATCU	2.6e-08	66.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00800 PE=4 SV=1	[more]

BLAST of Lsi05G006290 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G006290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703083816\|ref\|XP_010092311.1\|	1.4e-10	75.00	hypothetical protein L484_021173 [Morus notabilis]	[more]
gi\|255563653\|ref\|XP_002522828.1\|	5.3e-10	71.11	PREDICTED: transcription factor ILR3 [Ricinus communis]	[more]
gi\|1012037599\|ref\|XP_015953562.1\|	1.2e-09	68.89	PREDICTED: transcription factor ILR3-like [Arachis duranensis]	[more]
gi\|1021491323\|ref\|XP_016188681.1\|	1.2e-09	68.89	PREDICTED: transcription factor ILR3-like [Arachis ipaensis]	[more]
gi\|965602723\|dbj\|BAT89900.1\|	1.3e-08	66.67	hypothetical protein VIGAN_06102700 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006290.1	Lsi05G006290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23042	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	coord: 150..179 score: 1.7E-15coord: 1..41 score: 1.7
None	No IPR available	PANTHER	PTHR23042:SF67	TRANSCRIPTION FACTOR ILR3-RELATED	coord: 150..179 score: 1.7E-15coord: 1..41 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G006290	Cla005272	Watermelon (97103) v1	lsiwmB348
Lsi05G006290	ClCG10G005740	Watermelon (Charleston Gray)	lsiwcgB318
Lsi05G006290	Cla97C10G189930	Watermelon (97103) v2	lsiwmbB322
Lsi05G006290	Bhi11G000522	Wax gourd	lsiwgoB410
Lsi05G006290	Cp4.1LG00g00150	Cucurbita pepo (Zucchini)	cpelsiB014
Lsi05G006290	Cp4.1LG01g08120	Cucurbita pepo (Zucchini)	cpelsiB370
Lsi05G006290	Carg24824	Silver-seed gourd	carlsiB729
Lsi05G006290	Carg00051	Silver-seed gourd	carlsiB616

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi05G006290	Lsi04G012450	Bottle gourd (USVL1VR-Ls)	lsilsiB136

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G006290	Cucumber (Gy14) v2	cgyblsiB183
Lsi05G006290	Melon (DHL92) v3.6.1	lsimedB388
Lsi05G006290	Silver-seed gourd	carlsiB827
Lsi05G006290	Cucumber (Chinese Long) v3	cuclsiB217
Lsi05G006290	Cucumber (Gy14) v1	cgylsiB048
Lsi05G006290	Cucurbita maxima (Rimu)	cmalsiB030
Lsi05G006290	Cucurbita maxima (Rimu)	cmalsiB315
Lsi05G006290	Cucurbita maxima (Rimu)	cmalsiB691
Lsi05G006290	Cucurbita moschata (Rifu)	cmolsiB018
Lsi05G006290	Cucurbita moschata (Rifu)	cmolsiB301
Lsi05G006290	Cucurbita moschata (Rifu)	cmolsiB684
Lsi05G006290	Wild cucumber (PI 183967)	cpilsiB197
Lsi05G006290	Cucumber (Chinese Long) v2	culsiB198
Lsi05G006290	Melon (DHL92) v3.5.1	lsimeB370