Lsi05G004620 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G004620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RAN GTPase 3
Location	chr05 : 5891572 .. 5895994 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATAAATTCATGAATTTTTTTACGATAAAATGAAAAGAAAATATCGAGAAGCTTCTTAACCAAAATCCAAAATCTTACAACAAAAAAAACACTCTAAAACCAAATTCCGTCAGCTTTCCGCGCTGGCGGGGCCGTTTTCACATAGCGTGTCGTTTCAGGTCAAAAAAAGTTCTAAATTCCTTCTTCAGAACTTGCTACAATCATCTTCCATAACATTACATCGCCAATTTCTCTTGGGTTGATTTCCGCTTCTGTGTGTAGTGATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTTTGCTTAGAATCTTTGTTTTGATTGTTTTTTCTTCTGGGTTTCTTTTGAAATTGGGGTTTTTGTGTGGGTTACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTGTGAGTTTCACTTCTTATTCCGTTTGCCTTTGCAGATTTTAATTTCTTTATATATATATATATATATATATATATATATATAAGTGGCAATATAGAATATGAGAAAGTAACAAGAACTGGAAGATTCTATAAATGATGGACAATTTCAGATGAATATTGGCTTGGTAAGTTTTTGTCCTCACCTATGGGACTTCTGAGATCAATCTTTTGGATGCGAGAACTTTACCCTCTGGTTTCGTAGATAGAATCAGTGATGTGTGTGTGGTACCAAGAACTTTCAAGTGATCCTAAGAAATCCCTTTAGAAACTCAGTCGTATTCGTCCATGATCTTTTATTGATGGGTCATGTGTTTAGATCATGTTTTGTGGGAATGTTAGTTTTCTAAGGCTATTAGGGACACATTTTTGGAGGCTTTAGGTGGCCAGCCAGATAGCTTGTAACAGATTGTGCAGGGCTATGGTAGAGGAGGTAAATATCATCCTCCTTTTGAGATTGATTGATGGCTTTTTGGCACTCTGCTTTCTTCGCAGTTTTATGGAATATTGACTTGCGAGGGATAGGAGGGGTTTTAGAGATGTGTAGAGCTTTTGGAGGAGATTTGGGCCTTGGCTTGGTTCAATGCCTCCCTTGTGTATCATTTCATGACCTCTCAAATGGATTATGAAGTATTTGAGAATATTTCTTGTTATCCTCTGGTCTATGCCAGCCTTTATTGGTTATGAATCGTGGGGGACAAGTTACCTTTCCACTCATCTATAATATAAGGGCAAGAAAGAAAAAGATGACCAACAGATTGGATTGTTGTGCACCGTTCCCAGTATCGGAGGAGATAACTTTTTGTTGATATGCATGCGCTGAAAATGAAGACAGAGACCAAACAGAATGCCTTAGATTTATTTCTATATGTGTTGTGTGGTGGTTGGGCCTACCCACCCTATTTGTTCCATGATCTATTATCGGTCTATTGATACTGGCCACTTTGATAAATTGTCCCTGATTTTGACCAGATTCAAAATAAATGGGGGCCCATTCTTAGTCTTCCAATGAACTCTACAAACAGCCAGATTCTCAAAAGCATGCTCCCTTGGCACAAACATGTTAATGAGGGATTTGGCCATGATAGAACCCAAGATGTTCAGAATCTTGATTATTAGAGGGGTGGAAGCACTTTATTTTCTGGCTAAGAATAGCCCATTTATAAGACTCCTTATACCGGAGATCTTCTAAACTATGGCATTTTTCTGATTCACCTTTTATTATTATTATTATTATTATTTATTATTATTATTATTATTTTATATCCGCGAGTATTCGGGCAAATTTACGTATAACTCGACTAATCTCATGGGACAACTATGTTCCTCTCAATTAATCAACTGGAATTTTTATAATGTCTTATAATTTTTTTCTAGAAGTTTTTTTCTCTCTCCTTATTTTCTTATTTTGAGTACAACAATTGCGGGGTGTGGAATCAAACCCCACCTCAAGGAAGGGAGTAAATGTCAATTACCATTCAGTTAAAACTCGCTTTTCTTATTAGAATTTATTCTCGTGGATCACATATTTTCATTCTTAGAATGCTGAGTTTCCTTAGAAGTCAATGGTTCTATGAATGGAAATTTCAATGTTACAATGATGTTTACTTTCACAACTTATCTAATTAAAGTTCTTCAAAATAATCTTAAAGATAAAAATGGCAAGCTATTTGCATCTGTTTGGAAGCTCTTTAGAAAATAACCTTTGACTTTTGCTTTTAAAACAATTTTCAAGAACTGACATTGTGTAATTCATGAGAATGAAAGTTGTACTCTTGAAATCATTATTCAGTAGCCATGATCAAACAATTATCCAAATGTAAATTTCCATGAATTTTTGTTTTAGAAAAATGCAATATTTTTTTTTCAAAACAGCTGTCAAATAGTTCTTTATGTTTGCTAAACATCAGACAGTAGATTCTTTACTGGTAATGGTGTAAATAGATGATGTTTCCCCTCGTAGAAAATTCCTTTTCCTTTTGGGTAGATAAGGAAGGGACATTTTACTTTATTGCAGGCTGGGCAAGAATCATTCAGATCAATTACAAGATCTTACTACAGAGGGGCAGCTGGTGCTCTTTTAGTTTATGACATTACCAGGTGAGTCTGATGGATGGATGGATGGATGAGATTAACTTTTCTTATCGTCTCAAAACTGTCTCTTCTTTCTAATTGTTAGCTATATTTCATTGCATTGAACTTAGGGATGTTTGCTTTTCTACCTTCAGAGTTCGTAACTGTTAAGCTAGTTTTCTTATGATTGACCAATTTGTATTTACTATGTGGCTTCTCTTGGTAAAGATCGACAACCAATCTTCACTAATATCCCCTTGCAGTTGCAGTTGAATTTGATTTTTTTTTTTTCTTGTTTTGAGAAATCTAAGATCATCTCATGATTTTGTTATCAGGAGGGAAACTTTCAATCACTTGGCGAGCTGGTTGGAAGATGCTCGGCAGCATGCAAATCCCAACATGTCGATTATGCTTGTAGGAAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTCTTATTCTTAGAGGCTTCTGCTAGAACAGCACAAAATGTTGAGGAGGTCAATTTTGTTTTATATGATATGTGCTTCTTCTAAAAATGTAGACTGTGTTGTACATCATCTTGATGTTTGATTTTACAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGGTAAATTGGGTCTATCTTTTGTGGTAAAAATGTAAATTATTGATTGTGAATGTTACCTACCCACTCTGCACTGTGATATTACTTATTTGACAATTATCTGACATTATGGGCATTCATACGACTGCAGTAGGTCGTAGTACAAACTAGTGGCACTGGGACGTGTAAAAATTAGCAAAGGGCCATAGTAGCGATTTGTCTAGACTATTAAAATTATAGGAGTCTTATGATAACCAATATTGTAGCATTAGATTCTTATCTCATGAGATTAGTTAAAGTTGTGCATAAGTTAGTGTGAACACCTATGAATATAAAAAAAAGGTTAGGCATTTGTGGGACAACATTTTCATTCTTTGCTGTTATTTTTTAGGGTTGTGGTTAGAGAGAAATATAAGAGTTTTTAAGAGCTTGAGAGATCTTGGGAGGAAATGTGGTCTCTGATTATGTTTAACGCTTTGTTGGCTGTTCTATATTCTTTCATTAGTTAGGGTGTTTCATTTTGTTGGCTGTTCTATATTCTTTCATTGAGAATATCAATTTCCATTTTTTCCTGAGCTTAAACTACTGTTAGCATAGTTTCTGTTTTAAGAACATGTTGCATTGCAACCATGAAGAACAGAAATTGAGTTTTACGAGACAACTGTTTTGATTGAATATTGCAGTCATCTGGGATCAAGGTCGGTTACGGGCGTCCTCAAGGGCCATCGGGGGCGAGAGATGGAACAGTTGCACAGCGAGGTGGATGCTGTGGCTAATTGTAAAACTAAAAGAAAGTATTGTGTATATGATGAAGAACCATTTTGTGCAAGTTGTTTTACTCTTGTGCAAACCGCCATGATTAAGTTTCTTGTGTATCCCCTTCTATTAGCATTGAATGTACAATGTACAGTGTCTGATCATATAACTCAGAAGTCTACTTCCCCAAACTATTACTTTACTGCTCACTCCCAAAGAAATATCTTGACGATCTTATGAATTTTAGTTTGTACATTTAATTAGATCTTGTCTCCATCCATTTGTTCTATCCTTCGCCATGGAATTTGCCATAAAAGAAATTATGTTTTCATGTAGCTTTAAGGTCGGGGTTGGTATCATATAT

mRNA sequence

AACATAAATTCATGAATTTTTTTACGATAAAATGAAAAGAAAATATCGAGAAGCTTCTTAACCAAAATCCAAAATCTTACAACAAAAAAAACACTCTAAAACCAAATTCCGTCAGCTTTCCGCGCTGGCGGGGCCGTTTTCACATAGCGTGTCGTTTCAGGTCAAAAAAAGTTCTAAATTCCTTCTTCAGAACTTGCTACAATCATCTTCCATAACATTACATCGCCAATTTCTCTTGGGTTGATTTCCGCTTCTGTGTGTAGTGATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTGCTGGGCAAGAATCATTCAGATCAATTACAAGATCTTACTACAGAGGGGCAGCTGGTGCTCTTTTAGTTTATGACATTACCAGGAGGGAAACTTTCAATCACTTGGCGAGCTGGTTGGAAGATGCTCGGCAGCATGCAAATCCCAACATGTCGATTATGCTTGTAGGAAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTCTTATTCTTAGAGGCTTCTGCTAGAACAGCACAAAATGTTGAGGAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGTCATCTGGGATCAAGGTCGGTTACGGGCGTCCTCAAGGGCCATCGGGGGCGAGAGATGGAACAGTTGCACAGCGAGGTGGATGCTGTGGCTAATTGTAAAACTAAAAGAAAGTATTGTGTATATGATGAAGAACCATTTTGTGCAAGTTGTTTTACTCTTGTGCAAACCGCCATGATTAAGTTTCTTGTGTATCCCCTTCTATTAGCATTGAATGTACAATGTACAGTGTCTGATCATATAACTCAGAAGTCTACTTCCCCAAACTATTACTTTACTGCTCACTCCCAAAGAAATATCTTGACGATCTTATGAATTTTAGTTTGTACATTTAATTAGATCTTGTCTCCATCCATTTGTTCTATCCTTCGCCATGGAATTTGCCATAAAAGAAATTATGTTTTCATGTAGCTTTAAGGTCGGGGTTGGTATCATATAT

Coding sequence (CDS)

ATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTGCTGGGCAAGAATCATTCAGATCAATTACAAGATCTTACTACAGAGGGGCAGCTGGTGCTCTTTTAGTTTATGACATTACCAGGAGGGAAACTTTCAATCACTTGGCGAGCTGGTTGGAAGATGCTCGGCAGCATGCAAATCCCAACATGTCGATTATGCTTGTAGGAAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTCTTATTCTTAGAGGCTTCTGCTAGAACAGCACAAAATGTTGAGGAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGTCATCTGGGATCAAGGTCGGTTACGGGCGTCCTCAAGGGCCATCGGGGGCGAGAGATGGAACAGTTGCACAGCGAGGTGGATGCTGTGGCTAA

Protein sequence

MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNESSGIKVGYGRPQGPSGARDGTVAQRGGCCG

Homology

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BLAST of Lsi05G004620 vs. Swiss-Prot
Match: RAB1B_ARATH (Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 4.8e-111
Identity = 195/211 (92.42%), Postives = 206/211 (97.63%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DLAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+GVFDVSN
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIK+GYGR QG +G RDGT++Q GGCCG
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCCG 211

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BLAST of Lsi05G004620 vs. Swiss-Prot
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 3.7e-103
Identity = 184/211 (87.20%), Postives = 196/211 (92.89%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DLAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAA I + IQ+GVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ES GIKVGYG   GPSG RDG+ +Q GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

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BLAST of Lsi05G004620 vs. Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.3e-97
Identity = 177/210 (84.29%), Postives = 190/210 (90.48%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NM+IMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DL+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAF+KTA  I + IQ+GVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCC 211
           ES GIKVGY  P G SG    + +Q GGCC
Sbjct: 181 ESYGIKVGYAIP-GQSGGAGSSSSQGGGCC 209

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BLAST of Lsi05G004620 vs. Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 4.4e-96
Identity = 176/210 (83.81%), Postives = 189/210 (90.00%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NM+IMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DL+HRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAF+KTA  I + IQ+GVFDVSN
Sbjct: 121 CDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCC 211
           ES GIKVGY  P    GA  G+ +Q GGCC
Sbjct: 181 ESYGIKVGYVVPGQSGGA--GSSSQGGGCC 208

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BLAST of Lsi05G004620 vs. Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.1e-94
Identity = 173/213 (81.22%), Postives = 186/213 (87.32%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ IDG+ IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DL HRRAV+ EEGEQFAKE+GL+FLE SARTA NVEEAFI TA +I + IQ+GVFDVSN
Sbjct: 121 CDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSN 180

Query: 181 ESSGIKVGYGRPQ-GPSGAR--DGTVAQRGGCC 211
           ES GIKVGYG    GP  A+  +G   +   CC
Sbjct: 181 ESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

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BLAST of Lsi05G004620 vs. TrEMBL
Match: A0A0A0LC04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597310 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 3.8e-115
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 53  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIW 112

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK
Sbjct: 113 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 172

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
           ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 173 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 232

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG
Sbjct: 233 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 263

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BLAST of Lsi05G004620 vs. TrEMBL
Match: A0A061EC68_THECC (GTP-binding 2 OS=Theobroma cacao GN=TCM_017012 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.7e-113
Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIK+GYGR QGPSGARDG VAQRGGCCG
Sbjct: 181 ESSGIKIGYGRAQGPSGARDGAVAQRGGCCG 211

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BLAST of Lsi05G004620 vs. TrEMBL
Match: A0A0D2VKG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093900 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.3e-112
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
           +DL+HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 121 SDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIK+GYGR QGPSGARDG VAQ GGCCG
Sbjct: 181 ESSGIKIGYGRAQGPSGARDGAVAQSGGCCG 211

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BLAST of Lsi05G004620 vs. TrEMBL
Match: A0A0B0NKZ8_GOSAR (Ras-related RABB1b-like protein OS=Gossypium arboreum GN=F383_20317 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.3e-112
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
           +DL+HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 121 SDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIK+GYGR QGPSGARDG VAQ GGCCG
Sbjct: 181 ESSGIKIGYGRAQGPSGARDGAVAQSGGCCG 211

[Close]

BLAST of Lsi05G004620 vs. TrEMBL
Match: B9SJ79_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1478360 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 6.7e-112
Identity = 202/210 (96.19%), Postives = 206/210 (98.10%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI+TA KILQNIQEGVFDVSN
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIQEGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCC 211
           ESSGIKVGYGRPQGPSG+RDG VAQRGGCC
Sbjct: 181 ESSGIKVGYGRPQGPSGSRDGAVAQRGGCC 210

[Close]

BLAST of Lsi05G004620 vs. TAIR10
Match: AT4G35860.1 (AT4G35860.1 GTP-binding 2)

HSP 1 Score: 401.7 bits (1031), Expect = 2.7e-112
Identity = 195/211 (92.42%), Postives = 206/211 (97.63%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DLAH+RAVSKEEG+QFAKE+GLLFLEASARTAQNVEEAFI+TAAKILQNIQ+GVFDVSN
Sbjct: 121 CDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIK+GYGR QG +G RDGT++Q GGCCG
Sbjct: 181 ESSGIKIGYGRTQGAAGGRDGTISQGGGCCG 211

[Close]

BLAST of Lsi05G004620 vs. TAIR10
Match: AT4G17170.1 (AT4G17170.1 RAB GTPase homolog B1C)

HSP 1 Score: 375.6 bits (963), Expect = 2.1e-104
Identity = 184/211 (87.20%), Postives = 196/211 (92.89%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DLAHRRAVS EEGEQFAKE+GL+F+EASA+TAQNVEEAFIKTAA I + IQ+GVFDVSN
Sbjct: 121 CDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ES GIKVGYG   GPSG RDG+ +Q GGCCG
Sbjct: 181 ESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

[Close]

BLAST of Lsi05G004620 vs. TAIR10
Match: AT4G17160.1 (AT4G17160.1 RAB GTPase homolog B1A)

HSP 1 Score: 305.1 bits (780), Expect = 3.4e-83
Identity = 152/212 (71.70%), Postives = 175/212 (82.55%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSY Y FKYIIIGDTGVGKSCLLL+FTDKRFQ VHDLTIGVEFGA+ +TID +PIKLQIW
Sbjct: 1   MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRS+TRSYYRG AG LLVYDITRRETFNHLASWLE+ARQHA+ NM+ ML+GNK
Sbjct: 61  DTAGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DL  +R VS EEGEQFA+E+GL+F+EASA+TA NVEEAF++TAA I + IQ+GV D +N
Sbjct: 121 CDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDGVVDEAN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVA-QRGGCCG 212
           E        G   GP G +D + + QR GCCG
Sbjct: 181 EP-------GITPGPFGGKDASSSQQRRGCCG 205

[Close]

BLAST of Lsi05G004620 vs. TAIR10
Match: AT5G45750.1 (AT5G45750.1 RAB GTPase homolog A1C)

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-50
Identity = 99/213 (46.48%), Postives = 137/213 (64.32%), Query Frame = 1


Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D + IK QIWDT
Sbjct: 10  YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDT 69

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKAD 122
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++ +WL++ R H +PN+ +MLVGNK+D
Sbjct: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSD 129

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNES 182
           L H  AV  E+ + FA++  L F+E SA  A NVE AF +   +I   + +   + ++ES
Sbjct: 130 LRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASES 189

Query: 183 S-----GIKVGYGRPQGPSGARDGTVAQRGGCC 211
           +     G K+  G        +D +  ++GGCC
Sbjct: 190 ANVPSKGDKIDIG--------KDVSAVKKGGCC 214

[Close]

BLAST of Lsi05G004620 vs. TAIR10
Match: AT1G06400.1 (AT1G06400.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-50
Identity = 98/208 (47.12%), Postives = 133/208 (63.94%), Query Frame = 1


Query: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
           YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  +   ++G+ +K QIWDT
Sbjct: 10  YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDT 69

Query: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKAD 122
           AGQE +R+IT +YYRGA GALL+YD+TR  TF + A WL + R H +PN+ +ML+GNK D
Sbjct: 70  AGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCD 129

Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNES 182
           L H  AV  EE + FA+   L F+E SA  A NVE AF +   +I + + +   D   ES
Sbjct: 130 LRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGES 189

Query: 183 SGIKVGYGRPQGPSGARDGTVAQRGGCC 211
           + +    G+ +  +   DG+V +R GCC
Sbjct: 190 ADLP---GKGETINVKEDGSVLKRMGCC 214

[Close]

BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|659098152|ref|XP_008450002.1| (PREDICTED: ras-related protein RABB1b [Cucumis melo])

HSP 1 Score: 422.5 bits (1085), Expect = 4.2e-115
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
           ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIKVGYGRPQGPSGARDG VAQRGGCCG
Sbjct: 181 ESSGIKVGYGRPQGPSGARDGAVAQRGGCCG 211

[Close]

BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|449455912|ref|XP_004145694.1| (PREDICTED: ras-related protein RABB1b [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 5.5e-115
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
           ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG
Sbjct: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 211

[Close]

BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|700203099|gb|KGN58232.1| (hypothetical protein Csa_3G597310 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 5.5e-115
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID RPIKLQIW
Sbjct: 53  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIW 112

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK
Sbjct: 113 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 172

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
           ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 173 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 232

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG
Sbjct: 233 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 263

[Close]

BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|590646549|ref|XP_007031654.1| (GTP-binding 2 [Theobroma cacao])

HSP 1 Score: 416.0 bits (1068), Expect = 3.9e-113
Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
            DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 121 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIK+GYGR QGPSGARDG VAQRGGCCG
Sbjct: 181 ESSGIKIGYGRAQGPSGARDGAVAQRGGCCG 211

[Close]

BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|823248650|ref|XP_012456982.1| (PREDICTED: ras-related protein RABB1b-like [Gossypium raimondii])

HSP 1 Score: 412.9 bits (1060), Expect = 3.3e-112
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNK 120
           DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM+IML+GNK
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNK 120

Query: 121 ADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180
           +DL+HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN
Sbjct: 121 SDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSN 180

Query: 181 ESSGIKVGYGRPQGPSGARDGTVAQRGGCCG 212
           ESSGIK+GYGR QGPSGARDG VAQ GGCCG
Sbjct: 181 ESSGIKIGYGRAQGPSGARDGAVAQSGGCCG 211

The following BLAST results are available for this feature:

BLAST of Lsi05G004620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAB1B_ARATH	4.8e-111	92.42	Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1	[more]
RAB1C_ARATH	3.7e-103	87.20	Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1	[more]
RAB2B_MAIZE	2.3e-97	84.29	Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1	[more]
RAB2A_MAIZE	4.4e-96	83.81	Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1	[more]
YPTV4_VOLCA	3.1e-94	81.22	GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1	[more]

BLAST of Lsi05G004620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC04_CUCSA	3.8e-115	99.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597310 PE=4 SV=1	[more]
A0A061EC68_THECC	2.7e-113	97.16	GTP-binding 2 OS=Theobroma cacao GN=TCM_017012 PE=4 SV=1	[more]
A0A0D2VKG4_GOSRA	2.3e-112	96.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093900 PE=4 SV=1	[more]
A0A0B0NKZ8_GOSAR	2.3e-112	96.21	Ras-related RABB1b-like protein OS=Gossypium arboreum GN=F383_20317 PE=4 SV=1	[more]
B9SJ79_RICCO	6.7e-112	96.19	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1478360 PE=4 SV=1	[more]

BLAST of Lsi05G004620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35860.1	2.7e-112	92.42	GTP-binding 2	[more]
AT4G17170.1	2.1e-104	87.20	RAB GTPase homolog B1C	[more]
AT4G17160.1	3.4e-83	71.70	RAB GTPase homolog B1A	[more]
AT5G45750.1	1.0e-50	46.48	RAB GTPase homolog A1C	[more]
AT1G06400.1	1.7e-50	47.12	Ras-related small GTP-binding family protein	[more]

BLAST of Lsi05G004620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098152\|ref\|XP_008450002.1\|	4.2e-115	99.53	PREDICTED: ras-related protein RABB1b [Cucumis melo]	[more]
gi\|449455912\|ref\|XP_004145694.1\|	5.5e-115	99.53	PREDICTED: ras-related protein RABB1b [Cucumis sativus]	[more]
gi\|700203099\|gb\|KGN58232.1\|	5.5e-115	99.53	hypothetical protein Csa_3G597310 [Cucumis sativus]	[more]
gi\|590646549\|ref\|XP_007031654.1\|	3.9e-113	97.16	GTP-binding 2 [Theobroma cacao]	[more]
gi\|823248650\|ref\|XP_012456982.1\|	3.3e-112	96.21	PREDICTED: ras-related protein RABB1b-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR005225	Small_GTP-bd_dom
IPR001806	Small_GTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0008152	metabolic process
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0030100	regulation of endocytosis
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0005768	endosome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G004620.1	Lsi05G004620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 8..168 score: 2.3
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 7..160 score: 2.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..197 score: 1.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..180 score: 1.02
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 145..167 score: 3.1E-42coord: 48..70 score: 3.1E-42coord: 7..28 score: 3.1E-42coord: 110..123 score: 3.1E-42coord: 30..46 score: 3.1
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..211 score: 1.2E
None	No IPR available	PANTHER	PTHR24073:SF597	RAS-RELATED PROTEIN RABB1B	coord: 1..211 score: 1.2E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 4..170 score: 1.7
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 9..170 score: 9.0
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 7..170 score: 9.1E
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 12..211 score: 5.
None	No IPR available	PROFILE	PS51419	RAB	coord: 2..210 score: 36

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G004620	Csa3G597310	Cucumber (Chinese Long) v2	culsiB214
Lsi05G004620	CSPI03G26100	Wild cucumber (PI 183967)	cpilsiB212
Lsi05G004620	Cucsa.156140	Cucumber (Gy14) v1	cgylsiB248
Lsi05G004620	CmaCh11G014620	Cucurbita maxima (Rimu)	cmalsiB125
Lsi05G004620	CmoCh11G016540	Cucurbita moschata (Rifu)	cmolsiB117
Lsi05G004620	Cla003216	Watermelon (97103) v1	lsiwmB368
Lsi05G004620	MELO3C014794	Melon (DHL92) v3.5.1	lsimeB383
Lsi05G004620	ClCG05G012840	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G004620	MELO3C014794.2	Melon (DHL92) v3.6.1	lsimedB389
Lsi05G004620	Cla97C05G094490	Watermelon (97103) v2	lsiwmbB329
Lsi05G004620	Bhi01G001546	Wax gourd	lsiwgoB436
Lsi05G004620	Cp4.1LG04g05690	Cucurbita pepo (Zucchini)	cpelsiB555
Lsi05G004620	CsGy3G024430	Cucumber (Gy14) v2	cgyblsiB201
Lsi05G004620	Carg15599	Silver-seed gourd	carlsiB334
Lsi05G004620	CsaV3_3G027620	Cucumber (Chinese Long) v3	cuclsiB233

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G004620	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G004620	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G004620	Melon (DHL92) v3.6.1	lsimedB402