Cla003216 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003216
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ras-related protein Rab-2-A (AHRD V1 ***- B6U232_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type
Location	Chr5 : 14055334 .. 14056874 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCTACGATTACCTCTTCAAGTTCATTCTAATTGGAAATACAGGTAAGCTTTTTTAAATAATATCAAAATAGATTATTACTTTAAAAAAAAAAAAAAAAAAAAAATTATTTATTTATTTTATTTTTACATGCGTAGGAGTTGGAAAATCTTGCTTGATGTCACAATATATAGGACAAATATTTCAACCGATTCATGATGTTACTATCGGCAGTGAATTTGGTGCTCGTATGATCACCATTAATCGCCGACTTATAAAGCTTCATATTTGGGATACGGTTTGTTTTCATCTTACAAATGCATACTTTATTTGATTGTGTGGTTTTAAACTGCAGGCTGGGGGGCGGGCGGGGATCCATCTAACGCCCTTTTGCTTTTTATTTCTTAAAAGATAAAATAAATAATTTTAAAAAACTAAAAGATATATGTGGCTTTTATTTCAAATAATTATTATTATCATGTCATTGGTAAATTAAAAGTAATAAAAATTGATAATAAAATGATATTATTTATTTTTTGCAGGCTGGACAGGAGACATTCAAATCAATTACAAGATCTTTTTATAGAGGAGCAATTGGTGCTCTTTTAGTTTATGACGTTACCAGGTGAGTTTCTACACATCATTCATATAAAATTAATTTAAATATTATAATTACATCTAAACATTTAATATTAGCTTCTTTTTAAACTTTAAAATGAAAAATTATCAAATACTACTTTATTTACCTATTTTTGATGTACAATTGTCAATAATTATTTTAATGGTCATATGCTAAATTCTATAGTAATTATTATATTTTTTAGAAAAAAATAATTTGAAATCGTCTTGTCAGGAGAGAGACATTCAATAATTTAAATAGCTGGTTAAGAGATATCAGGGAGCTTGCAGATTCCAACATATCAATTATGCTAATAGGAAACAAGGTTGATCTTGATCGTCGAAGAGAAGTAAGCCAAGAAGAAGGAGAGCAATTTGCAAAACAAAATGGACTCTTATTCTTAGAAGTATCGGCTAAGACAACTCAAAATATTGAAGAGGTTAGTTTCTGGATTTTGCTTTAAAATATCTATAATATAGTTTTTCATCTTTGAACTTTCATTACTATCGTAGATAATAGGTCTAGCAAATTCACAAGCTTTGAGTTCTAATTTCTTAGAAAAAAAAATTTGTGGAATAAAATTAAATTTAACTTATTAAATCTTTTTTATAGAAAAAATATCTTTTTGTGCATACATTTTAGAATGGTAACATGTTAATTGAAATACTCACTTTTTAGTCGTTTGGGGGTTGGTGTTAGTTTGTATTAGTTAATTAAAAGAATTTTAAGGAAATTAGTTTTCGATCGTTAAAATTGAGTTTTAAAATACTAGTATTCATATGGTGTTGTATTTGATATTGCAGGTATTCACAAAAATTGCATCTAATATACTGCAAAAGATTGAGGATGGTGTCATTGATTTATCCAATAAGGTAGGGTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTCGGAATTATTTTGCTCTTTTCCTTTTTAG

mRNA sequence

ATGTCTATCTACGATTACCTCTTCAAGTTCATTCTAATTGGAAATACAGGAGTTGGAAAATCTTGCTTGATGTCACAATATATAGGACAAATATTTCAACCGATTCATGATGTTACTATCGGCAGTGAATTTGGTGCTCGTATGATCACCATTAATCGCCGACTTATAAAGCTTCATATTTGGGATACGGCTGGACAGGAGACATTCAAATCAATTACAAGATCTTTTTATAGAGGAGCAATTGGTGCTCTTTTAGTTTATGACGTTACCAGGAGAGAGACATTCAATAATTTAAATAGCTGGTTAAGAGATATCAGGGAGCTTGCAGATTCCAACATATCAATTATGCTAATAGGAAACAAGGTTGATCTTGATCGTCGAAGAGAAGTAAGCCAAGAAGAAGGAGAGCAATTTGCAAAACAAAATGGACTCTTATTCTTAGAAGTATCGGCTAAGACAACTCAAAATATTGAAGAGGTATTCACAAAAATTGCATCTAATATACTGCAAAAGATTGAGGATGGTGTCATTGATTTATCCAATAAGGTAGGGTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTCGGAATTATTTTGCTCTTTTCCTTTTTAG

Coding sequence (CDS)

ATGTCTATCTACGATTACCTCTTCAAGTTCATTCTAATTGGAAATACAGGAGTTGGAAAATCTTGCTTGATGTCACAATATATAGGACAAATATTTCAACCGATTCATGATGTTACTATCGGCAGTGAATTTGGTGCTCGTATGATCACCATTAATCGCCGACTTATAAAGCTTCATATTTGGGATACGGCTGGACAGGAGACATTCAAATCAATTACAAGATCTTTTTATAGAGGAGCAATTGGTGCTCTTTTAGTTTATGACGTTACCAGGAGAGAGACATTCAATAATTTAAATAGCTGGTTAAGAGATATCAGGGAGCTTGCAGATTCCAACATATCAATTATGCTAATAGGAAACAAGGTTGATCTTGATCGTCGAAGAGAAGTAAGCCAAGAAGAAGGAGAGCAATTTGCAAAACAAAATGGACTCTTATTCTTAGAAGTATCGGCTAAGACAACTCAAAATATTGAAGAGGTATTCACAAAAATTGCATCTAATATACTGCAAAAGATTGAGGATGGTGTCATTGATTTATCCAATAAGGTAGGGTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTCGGAATTATTTTGCTCTTTTCCTTTTTAG

Protein sequence

MSIYDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDTAGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVDLDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSNKVGFFFFFFFFNFSELFCSFPF

Homology

[Close]

BLAST of Cla003216 vs. Swiss-Prot
Match: RAB1B_ARATH (Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-67
Identity = 122/179 (68.16%), Postives = 151/179 (84.36%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+T++ R IKL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N+SIMLIGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSNK 183
           L  +R VS+EEG+QFAK++GLLFLE SA+T QN+EE F + A+ ILQ I+DGV D+SN+
Sbjct: 123 LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDGVFDVSNE 181

[Close]

BLAST of Cla003216 vs. Swiss-Prot
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-67
Identity = 125/187 (66.84%), Postives = 153/187 (81.82%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           Y YLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARMITI+ + IKL IWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A++N++IMLIGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS EEGEQFAK++GL+F+E SAKT QN+EE F K A+ I +KI+DGV D+SN  
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 YGIKVGY 189

[Close]

BLAST of Cla003216 vs. Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.1e-67
Identity = 124/187 (66.31%), Postives = 152/187 (81.28%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           Y YLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARMITI+ + IKL IWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A++N++IML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS EEGEQFAK++GL+F+E SAKT QN+EE F K A  I +KI+DGV D+SN  
Sbjct: 123 LSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 YGIKVGY 189

[Close]

BLAST of Cla003216 vs. Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-66
Identity = 123/187 (65.78%), Postives = 151/187 (80.75%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           Y YLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARMI I+ + IKL IWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A++N++IML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS EEGEQFAK++GL+F+E SAKT QN+EE F K A  I +KI+DGV D+SN  
Sbjct: 123 LSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 YGIKVGY 189

[Close]

BLAST of Cla003216 vs. Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 116/179 (64.80%), Postives = 147/179 (82.12%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           Y YLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARMITI+ + IKL IWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRR+TFN+L +WL D R+ ++SN+ IMLIGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSNK 183
           L+ RREV +EEGE FA+++GL+F+E SAKT  N+EE F   A  I QKI+DGV D++N+
Sbjct: 123 LEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNE 181

[Close]

BLAST of Cla003216 vs. TrEMBL
Match: A0A0A0LC04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597310 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-67
Identity = 128/187 (68.45%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R IKL IWDT
Sbjct: 55  YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIWDT 114

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N+SIML+GNK D
Sbjct: 115 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKAD 174

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLFLE SA+T QN+EE F K A+ ILQ I++GV D+SN  
Sbjct: 175 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNES 234

Query: 184 ---KVGF 186
              KVG+
Sbjct: 235 SGIKVGY 241

[Close]

BLAST of Cla003216 vs. TrEMBL
Match: D7TWF7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g00180 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-67
Identity = 129/187 (68.98%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R IKL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N++IMLIGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLFLE SA+T QN+EE F K A+ ILQ I++GV DLSN  
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAARILQNIQEGVFDLSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 SGIKVGY 189

[Close]

BLAST of Cla003216 vs. TrEMBL
Match: S8DT71_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_08444 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-67
Identity = 127/187 (67.91%), Postives = 158/187 (84.49%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R IKL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N++I+L+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIILVGNKSD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGL+FLE SA+T QN+EE FTK A+ ILQKI++GV D+SN  
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLIFLEASARTAQNVEEAFTKTAAKILQKIQEGVFDVSNET 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 SGIKVGY 189

[Close]

BLAST of Cla003216 vs. TrEMBL
Match: M5WU03_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011443mg PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.9e-67
Identity = 128/187 (68.45%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R +KL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPVKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N++IMLIGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKSD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLFLE SA+T QN+EE F K A+ ILQ I+DGV D+SN  
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQDGVFDVSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 SGIKVGY 189

[Close]

BLAST of Cla003216 vs. TrEMBL
Match: G7KN60_MEDTR (Small GTPase family RAB protein OS=Medicago truncatula GN=MTR_6g021790 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.3e-67
Identity = 128/187 (68.45%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R IKL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMLTIDSRPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N++I LIGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTITLIGNKCD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLF+E SAKT QN+EE F K A+ ILQ I+DGV D+SN  
Sbjct: 123 LSHRRAVSKEEGEQFAKENGLLFMEASAKTAQNVEEAFIKTAAKILQNIQDGVFDVSNET 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 CGIKVGY 189

[Close]

BLAST of Cla003216 vs. NCBI nr
Match: gi|470137861|ref|XP_004304678.1| (PREDICTED: ras-related protein RABB1b [Fragaria vesca subsp. vesca])

HSP 1 Score: 263.8 bits (673), Expect = 2.4e-67
Identity = 129/187 (68.98%), Postives = 155/187 (82.89%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI  R IKL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIETRPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N+SIML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKCD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLFLE SA+T QN+EE F K A+ ILQ I+DGV D+SN  
Sbjct: 123 LAHRRAVSREEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQDGVFDVSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 SGIKVGY 189

[Close]

BLAST of Cla003216 vs. NCBI nr
Match: gi|747107046|ref|XP_011101827.1| (PREDICTED: ras-related protein RABB1b [Sesamum indicum])

HSP 1 Score: 263.1 bits (671), Expect = 4.1e-67
Identity = 128/187 (68.45%), Postives = 158/187 (84.49%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R IKL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N++I+L+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTILLVGNKSD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLFLE SA+T QN+EE FTK A+ ILQKI++GV D+SN  
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTGQNVEEAFTKTAAKILQKIQEGVFDVSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 SGIKVGY 189

[Close]

BLAST of Cla003216 vs. NCBI nr
Match: gi|700203099|gb|KGN58232.1| (hypothetical protein Csa_3G597310 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 4.1e-67
Identity = 128/187 (68.45%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R IKL IWDT
Sbjct: 55  YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIWDT 114

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N+SIML+GNK D
Sbjct: 115 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKAD 174

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLFLE SA+T QN+EE F K A+ ILQ I++GV D+SN  
Sbjct: 175 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNES 234

Query: 184 ---KVGF 186
              KVG+
Sbjct: 235 SGIKVGY 241

[Close]

BLAST of Cla003216 vs. NCBI nr
Match: gi|657974700|ref|XP_008379185.1| (PREDICTED: ras-related protein RABB1b [Malus domestica])

HSP 1 Score: 263.1 bits (671), Expect = 4.1e-67
Identity = 128/187 (68.45%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R IKL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N++IMLIGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQXANPNMTIMLIGNKCD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLFLE SA+T QN+EE F K A+ ILQ I++GV D+SN  
Sbjct: 123 LSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 SGIKVGY 189

[Close]

BLAST of Cla003216 vs. NCBI nr
Match: gi|449455912|ref|XP_004145694.1| (PREDICTED: ras-related protein RABB1b [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 4.1e-67
Identity = 128/187 (68.45%), Postives = 156/187 (83.42%), Query Frame = 1


Query: 4   YDYLFKFILIGNTGVGKSCLMSQYIGQIFQPIHDVTIGSEFGARMITINRRLIKLHIWDT 63
           YDYLFK+I+IG+TGVGKSCL+ Q+  + FQP+HD+TIG EFGARM+TI+ R IKL IWDT
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIWDT 62

Query: 64  AGQETFKSITRSFYRGAIGALLVYDVTRRETFNNLNSWLRDIRELADSNISIMLIGNKVD 123
           AGQE+F+SITRS+YRGA GALLVYD+TRRETFN+L SWL D R+ A+ N+SIML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKAD 122

Query: 124 LDRRREVSQEEGEQFAKQNGLLFLEVSAKTTQNIEEVFTKIASNILQKIEDGVIDLSN-- 183
           L  RR VS+EEGEQFAK+NGLLFLE SA+T QN+EE F K A+ ILQ I++GV D+SN  
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNES 182

Query: 184 ---KVGF 186
              KVG+
Sbjct: 183 SGIKVGY 189

The following BLAST results are available for this feature:

BLAST of Cla003216 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAB1B_ARATH	1.1e-67	68.16	Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1	[more]
RAB1C_ARATH	3.1e-67	66.84	Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1	[more]
RAB2B_MAIZE	4.1e-67	66.31	Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1	[more]
RAB2A_MAIZE	1.6e-66	65.78	Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1	[more]
RAB2_LYMST	1.1e-64	64.80	Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1	[more]

BLAST of Cla003216 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC04_CUCSA	2.8e-67	68.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597310 PE=4 SV=1	[more]
D7TWF7_VITVI	3.7e-67	68.98	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g00180 PE=4 SV=...	[more]
S8DT71_9LAMI	3.7e-67	67.91	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_08444 PE=4 SV=1	[more]
M5WU03_PRUPE	4.9e-67	68.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011443mg PE=4 SV=1	[more]
G7KN60_MEDTR	6.3e-67	68.45	Small GTPase family RAB protein OS=Medicago truncatula GN=MTR_6g021790 PE=4 SV=1	[more]

BLAST of Cla003216 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|470137861\|ref\|XP_004304678.1\|	2.4e-67	68.98	PREDICTED: ras-related protein RABB1b [Fragaria vesca subsp. vesca]	[more]
gi\|747107046\|ref\|XP_011101827.1\|	4.1e-67	68.45	PREDICTED: ras-related protein RABB1b [Sesamum indicum]	[more]
gi\|700203099\|gb\|KGN58232.1\|	4.1e-67	68.45	hypothetical protein Csa_3G597310 [Cucumis sativus]	[more]
gi\|657974700\|ref\|XP_008379185.1\|	4.1e-67	68.45	PREDICTED: ras-related protein RABB1b [Malus domestica]	[more]
gi\|449455912\|ref\|XP_004145694.1\|	4.1e-67	68.45	PREDICTED: ras-related protein RABB1b [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0032482	Rab protein signal transduction
biological_process	GO:0008150	biological_process
biological_process	GO:0030100	regulation of endocytosis
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006623	protein targeting to vacuole
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005768	endosome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003216	Cla003216.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 9..169 score: 8.8
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 8..164 score: 8.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 4..178 score: 9.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..178 score: 9.28
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 146..168 score: 4.0E-37coord: 31..47 score: 4.0E-37coord: 49..71 score: 4.0E-37coord: 111..124 score: 4.0E-37coord: 8..29 score: 4.0
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..181 score: 1.8E
None	No IPR available	PANTHER	PTHR24073:SF597	RAS-RELATED PROTEIN RABB1B	coord: 1..181 score: 1.8E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 5..171 score: 5.7
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 10..171 score: 1.
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 8..171 score: 2.3
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 13..201 score: 5.
None	No IPR available	PROFILE	PS51419	RAB	coord: 3..199 score: 33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003216	Cla97C05G094490	Watermelon (97103) v2	wmwmbB209
Cla003216	Csa3G597310	Cucumber (Chinese Long) v2	cuwmB235
Cla003216	MELO3C014794	Melon (DHL92) v3.5.1	mewmB464
Cla003216	ClCG05G012840	Watermelon (Charleston Gray)	wcgwmB289
Cla003216	CSPI03G26100	Wild cucumber (PI 183967)	cpiwmB233
Cla003216	Cucsa.156140	Cucumber (Gy14) v1	cgywmB277
Cla003216	Lsi05G004620	Bottle gourd (USVL1VR-Ls)	lsiwmB368
Cla003216	CsGy3G024430	Cucumber (Gy14) v2	cgybwmB220
Cla003216	MELO3C014794.2	Melon (DHL92) v3.6.1	medwmB455
Cla003216	CsaV3_3G027620	Cucumber (Chinese Long) v3	cucwmB242
Cla003216	Bhi01G001546	Wax gourd	wgowmB216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None