Lsi05G003160 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	MLP-like protein 34
Location	chr05 : 4038657 .. 4040714 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTACTTACACCTAAATGTTGTAGGGTCTGGCAGATTGTCCTATGACATTAGCATATGTGCATGTAAGCTGGCCTCGACACTTACAAATATATATATATAAACTTTATTGACATATAGCTATTATTTTACTCCCTACAACTTTTGAAAAAGAAACATATGGTCACCTAATTAGGTTCTTACTAGCTATTATTTTACTATTATCCGCCCATTCTTATTTCAACAAACTTATATGGCTCTAATAAAATACTCACATCGACATATTGTACTTTGTTAAAAGCACCGTGAATATATATATAAGGATTGATATGACCAAAATTATAAACATTTTAAATGCTCAAGTTTGAACCATTGAAATTGAATTAAAACCTTATCATTATTATTAGAATAATTGCCATGAGTAACACTTTTAAAATTAATAATTAAGTGTATAATAACATTTTTAAATAATTGTAAATATAACAATCTATCCGTGATAGATTTTATTGTTAATAGACTCATATCATTGATAAACTCAATCCTTAATATCATTGATAAACTACGAAAGTTTAATCTAAATTTTCTTATATCTGCAAATTTTGAATTGTGCTATCTTGGCTAATATTTTGGGCTTGATTGTATTCATGGTAAATTAATGGCAGTTAAATTATAAGTATAATAATTTGTAGTAGGTTCTTTAAACTTTAAATTTTGTATCTAATATTAGATTCAAAACTTTCAATTTTAAGTCTAATAGATTCTTAATATATATCTTTTTTAAATTAGTCGTCCATCCATTAGTTATGATTTATGGAACTTTAAACATTCAATTTTGTGTCCAGTAAGGCTTAGTTTGGGATTGCTATAACTTTTAAAATAATTGCTGACAATTGTGCTTTTAGAAAAGTCAATTGTAAATTAGTGTTTGGTAAATTTTAGTTCTAAATTTGAAAAAACTAGTTACAGTTTTTGATATATAAATACTATATTATTATGTTTTACATATCATAAATAAATAAACTTACCATCCAAATAATCTTTTTAATAATTTATAATATCTAAATAATCTTACTATCAAAATTTATAATCTTTTAATAATTCAAAATATTTAAAATGTTATACTTCTCCAAATTAATTTTTTAAAGTATTATAAGGGAAAAACTTTAATTTTCTTTTTAAAAAATCAATATGGTATGATTTAAAAATAATAGTTGTGTTCTATGAAAAATGATGGTTATGTGAAAAAGATACTAAATATATAATCTAAATCTTAATTTTGAATGATAAAATTGAAATTTAAAAATTTATTAAAAAATAGAATCTGATTTTACAAAAATTTAAAAGCTAGTAGATAAATGTTTTAAAAATTACGTGAAATGAACATGGGTTGGAAAAGTGATTTTAGTAGATTTAATAAAAATTCATTTTACTAAAGTACAAAATACGGTTAAGATTCTTTTAAAATCTCTCTTTAAATCAACTTCAAACACACCCTAAATCCATAAATTCTAAATTTTTTGAAGAAATAGCTAAATTAATTTATAATTTTAAAAGTTTGGTTCAAAGATCAAATAGACAAACTTTAAAGTTTTAGGAAAAATTGTTATTCAACATTGATGGTTTTATTCTTATTTCTTTTTTAATTTTGAAAGTATTTAACATTGATTGGTTTAGAATTTAGAGCACAAATTCAACAAGTTATGACAATTAATTCAAATGGAGATATATAATAAAGGGAGGGTTTTTTTTTTTTTTTTTTTTTTTAAATTTAATGATAAAAAACAGGACATGAAGTTATATCAGAAAAATGGTCAATGAGAGTTGTGGATGATGCAAAAAGATACATAATCTATGAAGCTATTGAAGGAGATATGCAAAAATATTACAAAGTGCTGAGAGCAAAGTTTGAAGCTGTTAACTATGGAGGGTTAAGCAAATTAGGAGGAAGCTGCTTTGCAAAATGGACGGTTGAGTATGAAAAAGCTTATGAAAATGTGCCTTCACCAGAAAGCCACATGGAATTGTTTCTCAAAGTTTCCAAAGGCGTTGATGCTTATCTTTCTAAACAACACTAA

mRNA sequence

ATGAGACATGAAGTTATATCAGAAAAATGGTCAATGAGAGTTGTGGATGATGCAAAAAGATACATAATCTATGAAGCTATTGAAGGAGATATGCAAAAATATTACAAAGTGCTGAGAGCAAAGTTTGAAGCTGTTAACTATGGAGGGTTAAGCAAATTAGGAGGAAGCTGCTTTGCAAAATGGACGGTTGAGTATGAAAAAGCTTATGAAAATGTGCCTTCACCAGAAAGCCACATGGAATTGTTTCTCAAAGTTTCCAAAGGCGTTGATGCTTATCTTTCTAAACAACACTAA

Coding sequence (CDS)

ATGAGACATGAAGTTATATCAGAAAAATGGTCAATGAGAGTTGTGGATGATGCAAAAAGATACATAATCTATGAAGCTATTGAAGGAGATATGCAAAAATATTACAAAGTGCTGAGAGCAAAGTTTGAAGCTGTTAACTATGGAGGGTTAAGCAAATTAGGAGGAAGCTGCTTTGCAAAATGGACGGTTGAGTATGAAAAAGCTTATGAAAATGTGCCTTCACCAGAAAGCCACATGGAATTGTTTCTCAAAGTTTCCAAAGGCGTTGATGCTTATCTTTCTAAACAACACTAA

Protein sequence

MRHEVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTVEYEKAYENVPSPESHMELFLKVSKGVDAYLSKQH

Homology

[Close]

BLAST of Lsi05G003160 vs. TrEMBL
Match: A0A0A0LAY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342350 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.1e-30
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 4   EVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTV 63
           +V+SEKW +R VDDAK+ IIYEAIEGD+QKYYKVLRAK E V +G  SK+G   FAKWT+
Sbjct: 66  QVVSEKWLIRAVDDAKKCIIYEAIEGDLQKYYKVLRAKLEVV-HGRSSKIGRGSFAKWTI 125

Query: 64  EYEKAYENVPSPESHMELFLKVSKGVDAY-LSKQ 97
           E+EKA ENVPSP+SHME+F+K+SKGVDAY LSKQ
Sbjct: 126 EFEKANENVPSPDSHMEIFVKISKGVDAYCLSKQ 158

[Close]

BLAST of Lsi05G003160 vs. TrEMBL
Match: N0DKL1_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. ovifera GN=MLP-PG1 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 1


Query: 4   EVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTV 63
           E+ +EKW++RVVDD K+YIIYEA+EGD  K +KVLRAKFE VN GGLSK+    F KWTV
Sbjct: 65  ELRAEKWAIRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVN-GGLSKVRRGNFTKWTV 124

Query: 64  EYEKAYENVPSPESHMELFLKVSKGVDAYLSK 96
           E+EKA +NV SP++++ELF+K+SKGVDAY SK
Sbjct: 125 EFEKANQNVASPQNYLELFVKISKGVDAYFSK 155

[Close]

BLAST of Lsi05G003160 vs. TrEMBL
Match: N0DK19_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR1 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-26
Identity = 60/91 (65.93%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 4   EVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTV 63
           E+ +EKW++RVVDD K+YIIYEA+EGD  K +KVLRAKFE VN GGLSK+    F KWTV
Sbjct: 65  ELRAEKWAIRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVN-GGLSKVRRGNFTKWTV 124

Query: 64  EYEKAYENVPSPESHMELFLKVSKGVDAYLS 95
           E+EKA +NV SP++++ELF+K+SKGVDAY S
Sbjct: 125 EFEKANQNVASPQNYLELFVKISKGVDAYFS 154

[Close]

BLAST of Lsi05G003160 vs. TrEMBL
Match: A0A0A0LA34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342860 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.1e-24
Identity = 58/87 (66.67%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 9   KWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTVEYEKA 68
           K  MRVVDD K+ I+YE ++GD+ K+YKV RAK EAVN GGL+K+GG+ FAKWT+EY+KA
Sbjct: 69  KIKMRVVDDVKKSIVYEFMDGDVLKHYKVFRAKLEAVN-GGLNKVGGN-FAKWTIEYQKA 128

Query: 69  YENVPSPESHMELFLKVSKGVDAYLSK 96
            ENVPSPE++MEL +KVSKG+DAY+ K
Sbjct: 129 NENVPSPETYMELAVKVSKGLDAYIFK 153

[Close]

BLAST of Lsi05G003160 vs. TrEMBL
Match: A0A0A0LCN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G340350 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.1e-24
Identity = 53/93 (56.99%), Postives = 73/93 (78.49%), Query Frame = 1


Query: 3   HEVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWT 62
           H++++    ++VVDD K+YIIYEA+EGD+ K YKV   + E VN G LSK+GG  FAKWT
Sbjct: 65  HQLLTANIKLKVVDDMKKYIIYEAVEGDVLKNYKVFTTRLEVVN-GSLSKVGGGSFAKWT 124

Query: 63  VEYEKAYENVPSPESHMELFLKVSKGVDAYLSK 96
           +++ KA ENVPSPE+++E+F+ +SKGVDAY SK
Sbjct: 125 IDFVKANENVPSPENYLEMFINMSKGVDAYFSK 156

[Close]

BLAST of Lsi05G003160 vs. TAIR10
Match: AT1G35260.1 (AT1G35260.1 MLP-like protein 165)

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-06
Identity = 25/83 (30.12%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 12  MRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGG-SCFAKWTVEYEKAYE 71
           + V+D+ K  I    +EG ++K YK      + ++     K GG     KW ++YE+  +
Sbjct: 70  IEVIDEEKNVIQLRVLEGPLKKEYKSFLKTMKVMS----PKHGGPGSVVKWNMKYERIDQ 129

Query: 72  NVPSPESHMELFLKVSKGVDAYL 94
           NV  P   ++ F++V+K +D YL
Sbjct: 130 NVDHPNRLLQFFVEVTKEIDQYL 148

[Close]

BLAST of Lsi05G003160 vs. NCBI nr
Match: gi|778688605|ref|XP_004149788.2| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 7.3e-30
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 4   EVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTV 63
           +V+SEKW +R VDDAK+ IIYEAIEGD+QKYYKVLRAK E V +G  SK+G   FAKWT+
Sbjct: 66  QVVSEKWLIRAVDDAKKCIIYEAIEGDLQKYYKVLRAKLEVV-HGRSSKIGRGSFAKWTI 125

Query: 64  EYEKAYENVPSPESHMELFLKVSKGVDAY-LSKQ 97
           E+EKA ENVPSP+SHME+F+K+SKGVDAY LSKQ
Sbjct: 126 EFEKANENVPSPDSHMEIFVKISKGVDAYCLSKQ 158

[Close]

BLAST of Lsi05G003160 vs. NCBI nr
Match: gi|700202699|gb|KGN57832.1| (hypothetical protein Csa_3G342350 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 7.3e-30
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 4   EVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTV 63
           +V+SEKW +R VDDAK+ IIYEAIEGD+QKYYKVLRAK E V +G  SK+G   FAKWT+
Sbjct: 66  QVVSEKWLIRAVDDAKKCIIYEAIEGDLQKYYKVLRAKLEVV-HGRSSKIGRGSFAKWTI 125

Query: 64  EYEKAYENVPSPESHMELFLKVSKGVDAY-LSKQ 97
           E+EKA ENVPSP+SHME+F+K+SKGVDAY LSKQ
Sbjct: 126 EFEKANENVPSPDSHMEIFVKISKGVDAYCLSKQ 158

[Close]

BLAST of Lsi05G003160 vs. NCBI nr
Match: gi|477504342|dbj|BAN14688.1| (major latex-like protein [Cucurbita pepo subsp. ovifera])

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 1


Query: 4   EVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTV 63
           E+ +EKW++RVVDD K+YIIYEA+EGD  K +KVLRAKFE VN GGLSK+    F KWTV
Sbjct: 65  ELRAEKWAIRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVN-GGLSKVRRGNFTKWTV 124

Query: 64  EYEKAYENVPSPESHMELFLKVSKGVDAYLSK 96
           E+EKA +NV SP++++ELF+K+SKGVDAY SK
Sbjct: 125 EFEKANQNVASPQNYLELFVKISKGVDAYFSK 155

[Close]

BLAST of Lsi05G003160 vs. NCBI nr
Match: gi|477504344|dbj|BAN14689.1| (major latex-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 6.4e-26
Identity = 60/91 (65.93%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 4   EVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTV 63
           E+ +EKW++RVVDD K+YIIYEA+EGD  K +KVLRAKFE VN GGLSK+    F KWTV
Sbjct: 65  ELRAEKWAIRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVN-GGLSKVRRGNFTKWTV 124

Query: 64  EYEKAYENVPSPESHMELFLKVSKGVDAYLS 95
           E+EKA +NV SP++++ELF+K+SKGVDAY S
Sbjct: 125 EFEKANQNVASPQNYLELFVKISKGVDAYFS 154

[Close]

BLAST of Lsi05G003160 vs. NCBI nr
Match: gi|659086152|ref|XP_008443791.1| (PREDICTED: kirola-like [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-24
Identity = 57/89 (64.04%), Postives = 74/89 (83.15%), Query Frame = 1


Query: 4   EVISEKWSMRVVDDAKRYIIYEAIEGDMQKYYKVLRAKFEAVNYGGLSKLGGSCFAKWTV 63
           EV+SEKW ++VVDDA + II+EA+EGDM  YYK+LRAK EA N G  +K+G S F KWTV
Sbjct: 68  EVVSEKWLIKVVDDATKCIIFEAVEGDMLNYYKMLRAKMEAFN-GRSNKIGES-FGKWTV 127

Query: 64  EYEKAYENVPSPESHMELFLKVSKGVDAY 93
           E+EKAYENVP P++HM+LF+++SK +DAY
Sbjct: 128 EFEKAYENVPKPKTHMDLFVEMSKAIDAY 154

The following BLAST results are available for this feature:

BLAST of Lsi05G003160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAY7_CUCSA	5.1e-30	72.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342350 PE=4 SV=1	[more]
N0DKL1_CUCPE	1.2e-26	66.30	Major latex-like protein OS=Cucurbita pepo subsp. ovifera GN=MLP-PG1 PE=2 SV=1	[more]
N0DK19_CUCPE	4.4e-26	65.93	Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR1 PE=2 SV=1	[more]
A0A0A0LA34_CUCSA	7.1e-24	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342860 PE=4 SV=1	[more]
A0A0A0LCN2_CUCSA	7.1e-24	56.99	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G340350 PE=4 SV=1	[more]

BLAST of Lsi05G003160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G35260.1	4.5e-06	30.12	MLP-like protein 165	[more]

BLAST of Lsi05G003160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688605\|ref\|XP_004149788.2\|	7.3e-30	72.34	PREDICTED: kirola-like [Cucumis sativus]	[more]
gi\|700202699\|gb\|KGN57832.1\|	7.3e-30	72.34	hypothetical protein Csa_3G342350 [Cucumis sativus]	[more]
gi\|477504342\|dbj\|BAN14688.1\|	1.7e-26	66.30	major latex-like protein [Cucurbita pepo subsp. ovifera]	[more]
gi\|477504344\|dbj\|BAN14689.1\|	6.4e-26	65.93	major latex-like protein [Cucurbita pepo subsp. pepo]	[more]
gi\|659086152\|ref\|XP_008443791.1\|	2.0e-24	64.04	PREDICTED: kirola-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009607	response to biotic stimulus
GO:0006952	defense response

Vocabulary: **INTERPRO**
Term	Definition
IPR023393	START-like_dom_sf
IPR000916	Bet_v_I/MLP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003160.1	Lsi05G003160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000916	Bet v I/Major latex protein	PFAM	PF00407	Bet_v_1	coord: 11..95 score: 6.0
IPR000916	Bet v I/Major latex protein	SMART	SM01037	Bet_v_1_2	coord: 1..96 score: 1.
IPR023393	START-like domain	GENE3D	G3DSA:3.30.530.20		coord: 11..96 score: 1.6
None	No IPR available	PANTHER	PTHR31907	FAMILY NOT NAMED	coord: 4..97 score: 5.3
None	No IPR available	PANTHER	PTHR31907:SF2	SUBFAMILY NOT NAMED	coord: 4..97 score: 5.3
None	No IPR available	unknown	SSF55961	Bet v1-like	coord: 9..95 score: 3.71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003160	ClCG05G011050	Watermelon (Charleston Gray)	lsiwcgB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003160	Cucumber (Gy14) v2	cgyblsiB192
Lsi05G003160	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003160	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003160	Silver-seed gourd	carlsiB464
Lsi05G003160	Silver-seed gourd	carlsiB700
Lsi05G003160	Cucumber (Chinese Long) v3	cuclsiB231
Lsi05G003160	Watermelon (97103) v2	lsiwmbB329
Lsi05G003160	Wax gourd	lsiwgoB447
Lsi05G003160	Cucumber (Gy14) v1	cgylsiB322
Lsi05G003160	Cucumber (Gy14) v1	cgylsiB607
Lsi05G003160	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003160	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003160	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003160	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003160	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003160	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003160	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003160	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003160	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003160	Watermelon (97103) v1	lsiwmB361