ClCG05G011050 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G011050
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Major latex-like protein
Location	CG_Chr05 : 12839177 .. 12839420 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTGGTGGATGATGTGAAGAAATACATGATCTATGAACTTGTTGGAGGAGATGAACTTGAAGTAAAGGGTAAAACTTGAAGTACTTAATGGAGGGTTGAACAAAGTAGGAGGAAGCTTTGCAAAATGGACTATTGAGTTTGAAAAGACAAATGAAAATGTGCCTTCACCAGAAAGCTACTTGGGATTGTTTTCTAAGATTTCCAAAGCCATTGATGCTTATTTTTCCAAGAATAACTAA

mRNA sequence

ATGAGAGTGGTGGATGATGTGAAGAAATACATGATCTATGAACTTGTTGGAGGAGATGAACTTGAAGTAAAGGTACTTAATGGAGGGTTGAACAAAGTAGGAGGAAGCTTTGCAAAATGGACTATTGAGTTTGAAAAGACAAATGAAAATGTGCCTTCACCAGAAAGCTACTTGGGATTGTTTTCTAAGATTTCCAAAGCCATTGATGCTTATTTTTCCAAGAATAACTAA

Coding sequence (CDS)

ATGAGAGTGGTGGATGATGTGAAGAAATACATGATCTATGAACTTGTTGGAGGAGATGAACTTGAAGTAAAGGTACTTAATGGAGGGTTGAACAAAGTAGGAGGAAGCTTTGCAAAATGGACTATTGAGTTTGAAAAGACAAATGAAAATGTGCCTTCACCAGAAAGCTACTTGGGATTGTTTTCTAAGATTTCCAAAGCCATTGATGCTTATTTTTCCAAGAATAACTAA

Protein sequence

MRVVDDVKKYMIYELVGGDELEVKVLNGGLNKVGGSFAKWTIEFEKTNENVPSPESYLGLFSKISKAIDAYFSKNN

Homology

[Close]

BLAST of ClCG05G011050 vs. TrEMBL
Match: A0A0A0LA34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342860 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-19
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKVGGSFAKWTIEFEKTNENVP 60
           MRVVDDVKK ++YE + GD L+        ++ +NGGLNKVGG+FAKWTIE++K NENVP
Sbjct: 72  MRVVDDVKKSIVYEFMDGDVLKHYKVFRAKLEAVNGGLNKVGGNFAKWTIEYQKANENVP 131

Query: 61  SPESYLGLFSKISKAIDAYFSKN 76
           SPE+Y+ L  K+SK +DAY  KN
Sbjct: 132 SPETYMELAVKVSKGLDAYIFKN 154

[Close]

BLAST of ClCG05G011050 vs. TrEMBL
Match: N0DKL1_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. ovifera GN=MLP-PG1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.0e-19
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKVG-GSFAKWTIEFEKTNENV 60
           +RVVDDVKKY+IYE V GD L+         +V+NGGL+KV  G+F KWT+EFEK N+NV
Sbjct: 73  IRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVNGGLSKVRRGNFTKWTVEFEKANQNV 132

Query: 61  PSPESYLGLFSKISKAIDAYFSKN 76
            SP++YL LF KISK +DAYFSKN
Sbjct: 133 ASPQNYLELFVKISKGVDAYFSKN 156

[Close]

BLAST of ClCG05G011050 vs. TrEMBL
Match: A0A0A0LCN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G340350 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.0e-19
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKV-GGSFAKWTIEFEKTNENV 60
           ++VVDD+KKY+IYE V GD L+        ++V+NG L+KV GGSFAKWTI+F K NENV
Sbjct: 74  LKVVDDMKKYIIYEAVEGDVLKNYKVFTTRLEVVNGSLSKVGGGSFAKWTIDFVKANENV 133

Query: 61  PSPESYLGLFSKISKAIDAYFSKN 76
           PSPE+YL +F  +SK +DAYFSKN
Sbjct: 134 PSPENYLEMFINMSKGVDAYFSKN 157

[Close]

BLAST of ClCG05G011050 vs. TrEMBL
Match: N0DK19_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR1 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-18
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKVG-GSFAKWTIEFEKTNENV 60
           +RVVDDVKKY+IYE V GD L+         +V+NGGL+KV  G+F KWT+EFEK N+NV
Sbjct: 73  IRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVNGGLSKVRRGNFTKWTVEFEKANQNV 132

Query: 61  PSPESYLGLFSKISKAIDAYFSKN 76
            SP++YL LF KISK +DAYFS N
Sbjct: 133 ASPQNYLELFVKISKGVDAYFSNN 156

[Close]

BLAST of ClCG05G011050 vs. TrEMBL
Match: N0DK07_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR3 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKVGG-SFAKWTIEFEKTNENV 60
           +R VDDVKKY++YE V G+ L+        V+ ++GG  KVGG +F K TIEFEK NENV
Sbjct: 73  IRAVDDVKKYIVYEAVEGEALKQFKVLRAKVEAVHGGSTKVGGGNFTKLTIEFEKANENV 132

Query: 61  PSPESYLGLFSKISKAIDAYFSKN 76
            SPE YL LF KI+K +DAYFS N
Sbjct: 133 ASPEIYLELFVKIAKGVDAYFSNN 156

[Close]

BLAST of ClCG05G011050 vs. TAIR10
Match: AT5G28010.1 (AT5G28010.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.7e-06
Identity = 27/81 (33.33%), Postives = 42/81 (51.85%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGD----------ELEVKVLNGGLNKVGGSFAKWTIEFEKTNEN 60
           + +V+  KK + + ++ GD           ++V    GG     GS  KW IE+EK +EN
Sbjct: 85  IELVEPEKKLIKFRVIEGDVMAEYKSFLITIQVTPKEGGT----GSVVKWHIEYEKIDEN 144

Query: 61  VPSPESYLGLFSKISKAIDAY 72
           VP PE+ L  F++++K ID +
Sbjct: 145 VPHPENLLPFFAEMTKEIDEH 161

[Close]

BLAST of ClCG05G011050 vs. NCBI nr
Match: gi|449464144|ref|XP_004149789.1| (PREDICTED: MLP-like protein 34 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKVGGSFAKWTIEFEKTNENVP 60
           MRVVDDVKK ++YE + GD L+        ++ +NGGLNKVGG+FAKWTIE++K NENVP
Sbjct: 72  MRVVDDVKKSIVYEFMDGDVLKHYKVFRAKLEAVNGGLNKVGGNFAKWTIEYQKANENVP 131

Query: 61  SPESYLGLFSKISKAIDAYFSKN 76
           SPE+Y+ L  K+SK +DAY  KN
Sbjct: 132 SPETYMELAVKVSKGLDAYIFKN 154

[Close]

BLAST of ClCG05G011050 vs. NCBI nr
Match: gi|659114461|ref|XP_008457062.1| (PREDICTED: MLP-like protein 423 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 4.5e-19
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKVGGSFAKWTIEFEKTNENVP 60
           MR+VDDVKK ++YE++ GD L+        ++ +NGGLNKVGG+FAKWTIE++K NENVP
Sbjct: 72  MRLVDDVKKSIVYEIMDGDVLKYYKVFRAKLEAVNGGLNKVGGNFAKWTIEYQKANENVP 131

Query: 61  SPESYLGLFSKISKAIDAYFSKN 76
           SPE+Y+ L  K+SK +DAY  KN
Sbjct: 132 SPENYMELAVKVSKGLDAYIFKN 154

[Close]

BLAST of ClCG05G011050 vs. NCBI nr
Match: gi|778688602|ref|XP_011652791.1| (PREDICTED: uncharacterized protein LOC105435098 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-18
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKV-GGSFAKWTIEFEKTNENV 60
           ++VVDD+KKY+IYE V GD L+        ++V+NG L+KV GGSFAKWTI+F K NENV
Sbjct: 74  LKVVDDMKKYIIYEAVEGDVLKNYKVFTTRLEVVNGSLSKVGGGSFAKWTIDFVKANENV 133

Query: 61  PSPESYLGLFSKISKAIDAYFSKN 76
           PSPE+YL +F  +SK +DAYFSKN
Sbjct: 134 PSPENYLEMFINMSKGVDAYFSKN 157

[Close]

BLAST of ClCG05G011050 vs. NCBI nr
Match: gi|477504342|dbj|BAN14688.1| (major latex-like protein [Cucurbita pepo subsp. ovifera])

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-18
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKVG-GSFAKWTIEFEKTNENV 60
           +RVVDDVKKY+IYE V GD L+         +V+NGGL+KV  G+F KWT+EFEK N+NV
Sbjct: 73  IRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVNGGLSKVRRGNFTKWTVEFEKANQNV 132

Query: 61  PSPESYLGLFSKISKAIDAYFSKN 76
            SP++YL LF KISK +DAYFSKN
Sbjct: 133 ASPQNYLELFVKISKGVDAYFSKN 156

[Close]

BLAST of ClCG05G011050 vs. NCBI nr
Match: gi|477504344|dbj|BAN14689.1| (major latex-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1   MRVVDDVKKYMIYELVGGDELE--------VKVLNGGLNKVG-GSFAKWTIEFEKTNENV 60
           +RVVDDVKKY+IYE V GD L+         +V+NGGL+KV  G+F KWT+EFEK N+NV
Sbjct: 73  IRVVDDVKKYIIYEAVEGDPLKEFKVLRAKFEVVNGGLSKVRRGNFTKWTVEFEKANQNV 132

Query: 61  PSPESYLGLFSKISKAIDAYFSKN 76
            SP++YL LF KISK +DAYFS N
Sbjct: 133 ASPQNYLELFVKISKGVDAYFSNN 156

The following BLAST results are available for this feature:

BLAST of ClCG05G011050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA34_CUCSA	2.4e-19	59.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342860 PE=4 SV=1	[more]
N0DKL1_CUCPE	7.0e-19	61.90	Major latex-like protein OS=Cucurbita pepo subsp. ovifera GN=MLP-PG1 PE=2 SV=1	[more]
A0A0A0LCN2_CUCSA	7.0e-19	60.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G340350 PE=4 SV=1	[more]
N0DK19_CUCPE	2.7e-18	60.71	Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR1 PE=2 SV=1	[more]
N0DK07_CUCPE	1.6e-15	57.14	Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR3 PE=2 SV=1	[more]

BLAST of ClCG05G011050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28010.1	4.7e-06	33.33	Polyketide cyclase/dehydrase and lipid transport superfamily protein	[more]

BLAST of ClCG05G011050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464144\|ref\|XP_004149789.1\|	3.5e-19	59.04	PREDICTED: MLP-like protein 34 [Cucumis sativus]	[more]
gi\|659114461\|ref\|XP_008457062.1\|	4.5e-19	57.83	PREDICTED: MLP-like protein 423 [Cucumis melo]	[more]
gi\|778688602\|ref\|XP_011652791.1\|	1.0e-18	60.71	PREDICTED: uncharacterized protein LOC105435098 [Cucumis sativus]	[more]
gi\|477504342\|dbj\|BAN14688.1\|	1.0e-18	61.90	major latex-like protein [Cucurbita pepo subsp. ovifera]	[more]
gi\|477504344\|dbj\|BAN14689.1\|	3.8e-18	60.71	major latex-like protein [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000916	Bet_v_I/MLP
IPR023393	START-like_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response
GO:0009607	response to biotic stimulus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G011050.1	ClCG05G011050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000916	Bet v I/Major latex protein	PFAM	PF00407	Bet_v_1	coord: 4..74 score: 5.
IPR023393	START-like domain	GENE3D	G3DSA:3.30.530.20		coord: 3..75 score: 2.1
None	No IPR available	PANTHER	PTHR31907	FAMILY NOT NAMED	coord: 4..76 score: 6.3
None	No IPR available	PANTHER	PTHR31907:SF2	SUBFAMILY NOT NAMED	coord: 4..76 score: 6.3
None	No IPR available	unknown	SSF55961	Bet v1-like	coord: 3..73 score: 6.11

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G011050	Lsi05G003160	Bottle gourd (USVL1VR-Ls)	lsiwcgB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G011050	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G011050	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G011050	Cucumber (Gy14) v2	cgybwcgB217
ClCG05G011050	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G011050	Silver-seed gourd	carwcgB0497
ClCG05G011050	Silver-seed gourd	carwcgB0739
ClCG05G011050	Cucumber (Chinese Long) v3	cucwcgB241
ClCG05G011050	Watermelon (97103) v2	wcgwmbB229
ClCG05G011050	Wax gourd	wcgwgoB441
ClCG05G011050	Cucumber (Gy14) v1	cgywcgB345
ClCG05G011050	Cucumber (Gy14) v1	cgywcgB640
ClCG05G011050	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G011050	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G011050	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G011050	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G011050	Wild cucumber (PI 183967)	cpiwcgB240
ClCG05G011050	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G011050	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G011050	Watermelon (97103) v1	wcgwmB286