Lsi05G001890 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Patatin
Location	chr05 : 2669145 .. 2669976 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCGGTTCGGCACAAACAAAACTAACAGAAGCTCTCACTTTTTTGCTTTCTTCTTCTTCTTCTTCAACAATGGCTCCTCCTCCTCTCTCTTCTATTTCCCATCCCTTTTCTTCCCCAATTACAAACCCTAATCTCAATTTCACTTACAGATACGCTCTTCCTCTTCGCTTCCAAACTCTACGTTTCATTTCCAATTCATCTTCTTCTCCATCGCCTCCACCGCCGCCACCGCCTCCTCCTCCGCCGGATCCCATTCCCGAGAAGAAGTCTCTCGCCGTAGCCACCGGGGAGCTCTTCTTGGGGCTAGCAGCGAGGCTGATTAAGCGCTCTTCCGACAATACCACAAACTCGGTTGCTATGTTCGATAATCGCAGTGGGAACAGGAGTGTGTACGGGGAGAAAATCGGCGCGGTGGTTGAGGATGAGATTCAGCCCGGTGTAGTGTGGGAGCAACGGGTTAAAGACGTTGAGGCCGAGCAGGAGCGGCGAGTCGTTACCAACCCTGGCTTCAGTTTCTCCGCCGCTGGTTTGCTGTTTCCGTACCATCTTGGAGTTGCGAAATTTCTATTAGAGAATAGTTATATCAAGGTTTCTTCTCATCATTTTTCCCCTTTCTTCCTAACATGTTTGAGAATTTTGGGTTGTTCTTCCTTTTGTGTCTCCGTTGAGGTGTTTTGTTGTAATTGAACTCTGAATGATGATGTGCTTCAATTGGAAGAAATTGGTCTTCTGGAAGAGTAGGCATTTGAAGAGATTTTCTTTCTTTGTTATGCATCATTTTTTCTTGGATATTTGATGTGGCAGGACAGTTCAGATTTAGATGGATTTTAA

mRNA sequence

CATCGGTTCGGCACAAACAAAACTAACAGAAGCTCTCACTTTTTTGCTTTCTTCTTCTTCTTCTTCAACAATGGCTCCTCCTCCTCTCTCTTCTATTTCCCATCCCTTTTCTTCCCCAATTACAAACCCTAATCTCAATTTCACTTACAGATACGCTCTTCCTCTTCGCTTCCAAACTCTACGTTTCATTTCCAATTCATCTTCTTCTCCATCGCCTCCACCGCCGCCACCGCCTCCTCCTCCGCCGGATCCCATTCCCGAGAAGAAGTCTCTCGCCGTAGCCACCGGGGAGCTCTTCTTGGGGCTAGCAGCGAGGCTGATTAAGCGCTCTTCCGACAATACCACAAACTCGGTTGCTATGTTCGATAATCGCAGTGGGAACAGGAGTGTGTACGGGGAGAAAATCGGCGCGGTGGTTGAGGATGAGATTCAGCCCGGTGTAGTGTGGGAGCAACGGGTTAAAGACGTTGAGGCCGAGCAGGAGCGGCGAGTCGTTACCAACCCTGGCTTCAGTTTCTCCGCCGCTGGTTTGCTGTTTCCGTACCATCTTGGAGTTGCGAAATTTCTATTAGAGAATAGTTATATCAAGGACAGTTCAGATTTAGATGGATTTTAA

Coding sequence (CDS)

ATGGCTCCTCCTCCTCTCTCTTCTATTTCCCATCCCTTTTCTTCCCCAATTACAAACCCTAATCTCAATTTCACTTACAGATACGCTCTTCCTCTTCGCTTCCAAACTCTACGTTTCATTTCCAATTCATCTTCTTCTCCATCGCCTCCACCGCCGCCACCGCCTCCTCCTCCGCCGGATCCCATTCCCGAGAAGAAGTCTCTCGCCGTAGCCACCGGGGAGCTCTTCTTGGGGCTAGCAGCGAGGCTGATTAAGCGCTCTTCCGACAATACCACAAACTCGGTTGCTATGTTCGATAATCGCAGTGGGAACAGGAGTGTGTACGGGGAGAAAATCGGCGCGGTGGTTGAGGATGAGATTCAGCCCGGTGTAGTGTGGGAGCAACGGGTTAAAGACGTTGAGGCCGAGCAGGAGCGGCGAGTCGTTACCAACCCTGGCTTCAGTTTCTCCGCCGCTGGTTTGCTGTTTCCGTACCATCTTGGAGTTGCGAAATTTCTATTAGAGAATAGTTATATCAAGGACAGTTCAGATTTAGATGGATTTTAA

Protein sequence

MAPPPLSSISHPFSSPITNPNLNFTYRYALPLRFQTLRFISNSSSSPSPPPPPPPPPPPDPIPEKKSLAVATGELFLGLAARLIKRSSDNTTNSVAMFDNRSGNRSVYGEKIGAVVEDEIQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYIKDSSDLDGF

Homology

[Close]

BLAST of Lsi05G001890 vs. TrEMBL
Match: A0A0A0L746_CUCSA (Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 9.6e-75
Identity = 151/181 (83.43%), Postives = 167/181 (92.27%), Query Frame = 1


Query: 1   MAPPPLSSISHPFSSPITNPNLNFTYRYALPLRFQTLRFISNSSSSPSPPPPPPPPPPPD 60
           MAPP LSSISHPFSSPITNPNLNFT+R++LPLR QTLRFISNSSSSP   PPPP PPPPD
Sbjct: 1   MAPPHLSSISHPFSSPITNPNLNFTHRFSLPLRSQTLRFISNSSSSP---PPPPSPPPPD 60

Query: 61  PIPEKKSLAVATGELFLGLAARLIKRSSDNTTNSVAMFDNRSGN-RSVYGEKIGAVVEDE 120
           PIPEK+S AVATGELFLGLAARLIKRSSD T+ SV+MFDNRSGN R+VY E+IGAVVEDE
Sbjct: 61  PIPEKRSFAVATGELFLGLAARLIKRSSDQTSKSVSMFDNRSGNNRNVYEERIGAVVEDE 120

Query: 121 IQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYIKDSSDLD 180
           IQPGV+WEQRVKDVEAE+ER +VT+PGFSFSAAGLLFPYHLGVAKFLLEN+YIK+++ L 
Sbjct: 121 IQPGVLWEQRVKDVEAERERPLVTSPGFSFSAAGLLFPYHLGVAKFLLENAYIKETTPLA 178

[Close]

BLAST of Lsi05G001890 vs. TrEMBL
Match: W9RMD0_9ROSA (Patatin OS=Morus notabilis GN=L484_024189 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-43
Identity = 108/188 (57.45%), Postives = 129/188 (68.62%), Query Frame = 1


Query: 1   MAPPPLSSISHPFSS-PITNPNLNFTYRYALPLRFQTLRFISNSSSSPSPPPPPPPPPPP 60
           MAPP LSS+ HP    P ++PN N   RY LP R         SSS    P P    P P
Sbjct: 16  MAPPSLSSLLHPHPHHPFSSPNPNLARRYTLPSRTPPSTVTPLSSS----PSPGADQPSP 75

Query: 61  DPIPEKKSLAVATGELFLGLAARLIKRSSDN------TTNSVAMFDNRSGNRSV-YGEKI 120
            P P KKS A+ATGELFLGLA+RL+KR S          ++VAMF+N  G+    Y E+I
Sbjct: 76  SPAPPKKSFAIATGELFLGLASRLVKRPSRGPNGEKAAADAVAMFENYGGDGGGNYRERI 135

Query: 121 GAVVEDEIQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYI 180
           G V+EDEI+P VVWEQRVKDVEAE++RRVVT+PGFSFSAAGLLFPYHLGVA+FL++N YI
Sbjct: 136 GKVMEDEIEPEVVWEQRVKDVEAERQRRVVTSPGFSFSAAGLLFPYHLGVARFLIQNGYI 195

[Close]

BLAST of Lsi05G001890 vs. TrEMBL
Match: M5XXP9_PRUPE (Patatin OS=Prunus persica GN=PRUPE_ppa006651mg PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.2e-42
Identity = 107/188 (56.91%), Postives = 130/188 (69.15%), Query Frame = 1


Query: 7   SSISHPFSSPITNPNLNFTYRYALPLRFQTLRFIS----------NSSSSPSPPPPPPPP 66
           S++  P   P  NPNL   +RY +PLR QTL   S          N +SSPS  PPP  P
Sbjct: 5   SALFQPQLHPFPNPNL--IHRYTIPLRTQTLTTSSVPHSTPNSETNQTSSPSSAPPPQSP 64

Query: 67  PPPDPIPEKKSLAVATGELFLGLAARLIKRSSDN----TTNSVAMFDNRSGNRSVYGEKI 126
            PP P   KKS AVATGELFLGLA+R+IKR +        +SVAMF+  S  ++   E+I
Sbjct: 65  EPPSP---KKSFAVATGELFLGLASRIIKRPNGGPDGKAASSVAMFE--SSGKNYLDERI 124

Query: 127 GAVVEDEIQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYI 181
           G V+EDEI+P VVWEQRVKDVEAE+ERRVVT+PGFSFSAAGLLFPYHLG A+FL++N YI
Sbjct: 125 GKVMEDEIEPDVVWEQRVKDVEAEKERRVVTSPGFSFSAAGLLFPYHLGAAQFLIQNGYI 184

[Close]

BLAST of Lsi05G001890 vs. TrEMBL
Match: V4T1E1_9ROSI (Patatin OS=Citrus clementina GN=CICLE_v10001315mg PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 91/181 (50.28%), Postives = 119/181 (65.75%), Query Frame = 1


Query: 6   LSSISHPFSSPITNPNLNFTYRYALPLRFQTLRFISNSSSSPSPPPPPPPPPPPDPIPEK 65
           LS+ +H F S   NPN N  +R  L +   T +    + +  S PPPPPPP    P  EK
Sbjct: 25  LSNSTHTFLSANPNPNSNLIHRRYLSISSFTPKQTPKNHNLTSTPPPPPPPQNEKPTSEK 84

Query: 66  KSLAVATGELFLGLAARLIKRSSDNTTNS------VAMFDNRSGNRSVYGEKIGAVVEDE 125
           +S AV TGELFLG+A+RL+  S+    N+      +   +    +   Y E+IGAV+EDE
Sbjct: 85  RSFAVVTGELFLGIASRLLNGSNRLAANNFETIPLIERSEKLGSSGEDYKERIGAVMEDE 144

Query: 126 IQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYIKDSSDLD 181
           I+P V+WEQRV+D+EAE+ERRVVT PGFSFSAAGLLFPYHLGVA+ L+E  YIK+++ L 
Sbjct: 145 IEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLA 204

[Close]

BLAST of Lsi05G001890 vs. TrEMBL
Match: V4V0C2_9ROSI (Patatin OS=Citrus clementina GN=CICLE_v10001315mg PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 91/181 (50.28%), Postives = 119/181 (65.75%), Query Frame = 1


Query: 6   LSSISHPFSSPITNPNLNFTYRYALPLRFQTLRFISNSSSSPSPPPPPPPPPPPDPIPEK 65
           LS+ +H F S   NPN N  +R  L +   T +    + +  S PPPPPPP    P  EK
Sbjct: 25  LSNSTHTFLSANPNPNSNLIHRRYLSISSFTPKQTPKNHNLTSTPPPPPPPQNEKPTSEK 84

Query: 66  KSLAVATGELFLGLAARLIKRSSDNTTNS------VAMFDNRSGNRSVYGEKIGAVVEDE 125
           +S AV TGELFLG+A+RL+  S+    N+      +   +    +   Y E+IGAV+EDE
Sbjct: 85  RSFAVVTGELFLGIASRLLNGSNRLAANNFETIPLIERSEKLGSSGEDYKERIGAVMEDE 144

Query: 126 IQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYIKDSSDLD 181
           I+P V+WEQRV+D+EAE+ERRVVT PGFSFSAAGLLFPYHLGVA+ L+E  YIK+++ L 
Sbjct: 145 IEPEVIWEQRVRDIEAEKERRVVTTPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLA 204

[Close]

BLAST of Lsi05G001890 vs. TAIR10
Match: AT1G33270.1 (AT1G33270.1 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-32
Identity = 68/116 (58.62%), Postives = 90/116 (77.59%), Query Frame = 1


Query: 65  KKSLAVATGELFLGLAARLIKRSSDNTTNSVAMFDNRSGNRSVYGEKIGAVVEDEIQPGV 124
           K+S AVATGELF+G+A+RL+K S+  T       D+        G++I +V+EDEI+P +
Sbjct: 50  KRSFAVATGELFIGIASRLLKSSNQKTPP----IDD--------GDRIASVIEDEIEPAM 109

Query: 125 VWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYIKDSSDLDG 181
           +WEQRVKDVEAE+ERRV+T+PGFSFSAAGLLFPYHLGVA+ L+E  YIK+++ L G
Sbjct: 110 IWEQRVKDVEAEKERRVITSPGFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAG 153

[Close]

BLAST of Lsi05G001890 vs. NCBI nr
Match: gi|449464490|ref|XP_004149962.1| (PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 151/181 (83.43%), Postives = 167/181 (92.27%), Query Frame = 1


Query: 1   MAPPPLSSISHPFSSPITNPNLNFTYRYALPLRFQTLRFISNSSSSPSPPPPPPPPPPPD 60
           MAPP LSSISHPFSSPITNPNLNFT+R++LPLR QTLRFISNSSSSP   PPPP PPPPD
Sbjct: 1   MAPPHLSSISHPFSSPITNPNLNFTHRFSLPLRSQTLRFISNSSSSP---PPPPSPPPPD 60

Query: 61  PIPEKKSLAVATGELFLGLAARLIKRSSDNTTNSVAMFDNRSGN-RSVYGEKIGAVVEDE 120
           PIPEK+S AVATGELFLGLAARLIKRSSD T+ SV+MFDNRSGN R+VY E+IGAVVEDE
Sbjct: 61  PIPEKRSFAVATGELFLGLAARLIKRSSDQTSKSVSMFDNRSGNNRNVYEERIGAVVEDE 120

Query: 121 IQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYIKDSSDLD 180
           IQPGV+WEQRVKDVEAE+ER +VT+PGFSFSAAGLLFPYHLGVAKFLLEN+YIK+++ L 
Sbjct: 121 IQPGVLWEQRVKDVEAERERPLVTSPGFSFSAAGLLFPYHLGVAKFLLENAYIKETTPLA 178

[Close]

BLAST of Lsi05G001890 vs. NCBI nr
Match: gi|659112152|ref|XP_008456089.1| (PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo])

HSP 1 Score: 286.6 bits (732), Expect = 3.1e-74
Identity = 155/182 (85.16%), Postives = 168/182 (92.31%), Query Frame = 1


Query: 1   MAPPPLSSISHPFSS-PITNPNLNFTYRYALPLRFQTLRFISNSSSSPSPPPPPPPPPPP 60
           MAPP LSSISHPFSS PITNPNLNFT R+ LPLR QTLRFISNSSSS SPPPPP PPPP 
Sbjct: 1   MAPPHLSSISHPFSSSPITNPNLNFTCRFPLPLRSQTLRFISNSSSSSSPPPPPSPPPP- 60

Query: 61  DPIPEKKSLAVATGELFLGLAARLIKRSSDNTTNSVAMFDNRSGN-RSVYGEKIGAVVED 120
           DPIPEK+SLAVATGELFLGLAARLIKRSSD T+NSV+MFDNR+GN RSVY E+IGAVVED
Sbjct: 61  DPIPEKRSLAVATGELFLGLAARLIKRSSDQTSNSVSMFDNRTGNNRSVYEERIGAVVED 120

Query: 121 EIQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYIKDSSDL 180
           EIQPGV+WEQRVKDVEAE+ER +VT+PGFSFSAAGLLFPYHLGVAKFLLENSYIK+++ L
Sbjct: 121 EIQPGVLWEQRVKDVEAERERPLVTSPGFSFSAAGLLFPYHLGVAKFLLENSYIKETTPL 180

[Close]

BLAST of Lsi05G001890 vs. NCBI nr
Match: gi|658008273|ref|XP_008339328.1| (PREDICTED: patatin-like phospholipase domain-containing protein 4 [Malus domestica])

HSP 1 Score: 187.2 bits (474), Expect = 2.5e-44
Identity = 113/207 (54.59%), Postives = 139/207 (67.15%), Query Frame = 1


Query: 2   APPPLSSISH---------PFSSPITNPNLNFTYRYALPLRFQTLRFI------------ 61
           +PP ++S+S          PFSSP  NPN N  +RY +PLR   L               
Sbjct: 19  SPPLMASLSSLLHPNHLHLPFSSPNPNPNPNLLHRYPIPLRPLFLTHSVSPHSXPNSDTN 78

Query: 62  --SNSSSSPSPPPPPPPPPPPDPIPEKKSLAVATGELFLGLAARLIKRSSDN-----TTN 121
             S+SSSS S PPPPPPPPPP     KKS AVATGELFLGLA+R+IKR + +       +
Sbjct: 79  QNSSSSSSSSAPPPPPPPPPPT----KKSFAVATGELFLGLASRIIKRRNGDPEGKAAAS 138

Query: 122 SVAMFDNRSGNRSVYGEKIGAVVEDEIQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAG 181
           SVAMF++       + E+IG V+ED+IQP V+WEQRVKDVEAE+ERRVVT+PGFSFSAAG
Sbjct: 139 SVAMFESSG---KYFEERIGKVIEDDIQPEVIWEQRVKDVEAEKERRVVTSPGFSFSAAG 198

[Close]

BLAST of Lsi05G001890 vs. NCBI nr
Match: gi|703127631|ref|XP_010103886.1| (Patatin-like phospholipase domain-containing protein 2 [Morus notabilis])

HSP 1 Score: 182.6 bits (462), Expect = 6.3e-43
Identity = 108/188 (57.45%), Postives = 129/188 (68.62%), Query Frame = 1


Query: 1   MAPPPLSSISHPFSS-PITNPNLNFTYRYALPLRFQTLRFISNSSSSPSPPPPPPPPPPP 60
           MAPP LSS+ HP    P ++PN N   RY LP R         SSS    P P    P P
Sbjct: 16  MAPPSLSSLLHPHPHHPFSSPNPNLARRYTLPSRTPPSTVTPLSSS----PSPGADQPSP 75

Query: 61  DPIPEKKSLAVATGELFLGLAARLIKRSSDN------TTNSVAMFDNRSGNRSV-YGEKI 120
            P P KKS A+ATGELFLGLA+RL+KR S          ++VAMF+N  G+    Y E+I
Sbjct: 76  SPAPPKKSFAIATGELFLGLASRLVKRPSRGPNGEKAAADAVAMFENYGGDGGGNYRERI 135

Query: 121 GAVVEDEIQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYI 180
           G V+EDEI+P VVWEQRVKDVEAE++RRVVT+PGFSFSAAGLLFPYHLGVA+FL++N YI
Sbjct: 136 GKVMEDEIEPEVVWEQRVKDVEAERQRRVVTSPGFSFSAAGLLFPYHLGVARFLIQNGYI 195

[Close]

BLAST of Lsi05G001890 vs. NCBI nr
Match: gi|596153536|ref|XP_007222791.1| (hypothetical protein PRUPE_ppa006651mg [Prunus persica])

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 107/188 (56.91%), Postives = 130/188 (69.15%), Query Frame = 1


Query: 7   SSISHPFSSPITNPNLNFTYRYALPLRFQTLRFIS----------NSSSSPSPPPPPPPP 66
           S++  P   P  NPNL   +RY +PLR QTL   S          N +SSPS  PPP  P
Sbjct: 5   SALFQPQLHPFPNPNL--IHRYTIPLRTQTLTTSSVPHSTPNSETNQTSSPSSAPPPQSP 64

Query: 67  PPPDPIPEKKSLAVATGELFLGLAARLIKRSSDN----TTNSVAMFDNRSGNRSVYGEKI 126
            PP P   KKS AVATGELFLGLA+R+IKR +        +SVAMF+  S  ++   E+I
Sbjct: 65  EPPSP---KKSFAVATGELFLGLASRIIKRPNGGPDGKAASSVAMFE--SSGKNYLDERI 124

Query: 127 GAVVEDEIQPGVVWEQRVKDVEAEQERRVVTNPGFSFSAAGLLFPYHLGVAKFLLENSYI 181
           G V+EDEI+P VVWEQRVKDVEAE+ERRVVT+PGFSFSAAGLLFPYHLG A+FL++N YI
Sbjct: 125 GKVMEDEIEPDVVWEQRVKDVEAEKERRVVTSPGFSFSAAGLLFPYHLGAAQFLIQNGYI 184

The following BLAST results are available for this feature:

BLAST of Lsi05G001890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G001890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L746_CUCSA	9.6e-75	83.43	Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1	[more]
W9RMD0_9ROSA	4.4e-43	57.45	Patatin OS=Morus notabilis GN=L484_024189 PE=3 SV=1	[more]
M5XXP9_PRUPE	8.2e-42	56.91	Patatin OS=Prunus persica GN=PRUPE_ppa006651mg PE=3 SV=1	[more]
V4T1E1_9ROSI	1.0e-36	50.28	Patatin OS=Citrus clementina GN=CICLE_v10001315mg PE=3 SV=1	[more]
V4V0C2_9ROSI	1.0e-36	50.28	Patatin OS=Citrus clementina GN=CICLE_v10001315mg PE=3 SV=1	[more]

BLAST of Lsi05G001890 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33270.1	1.4e-32	58.62	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protei...	[more]

BLAST of Lsi05G001890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464490\|ref\|XP_004149962.1\|	1.4e-74	83.43	PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativ...	[more]
gi\|659112152\|ref\|XP_008456089.1\|	3.1e-74	85.16	PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo]	[more]
gi\|658008273\|ref\|XP_008339328.1\|	2.5e-44	54.59	PREDICTED: patatin-like phospholipase domain-containing protein 4 [Malus domesti...	[more]
gi\|703127631\|ref\|XP_010103886.1\|	6.3e-43	57.45	Patatin-like phospholipase domain-containing protein 2 [Morus notabilis]	[more]
gi\|596153536\|ref\|XP_007222791.1\|	1.2e-41	56.91	hypothetical protein PRUPE_ppa006651mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016042	lipid catabolic process

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016042	lipid catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001890.1	Lsi05G001890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12406:SF7	BRUMMER, ISOFORM B-RELATED	coord: 42..174 score: 3.2
None	No IPR available	unknown	SSF101447	Formin homology 2 domain (FH2 domain)	coord: 107..128 score: 1.15E-5coord: 49..59 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001890	Csa3G214570	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001890	CSPI03G18830	Wild cucumber (PI 183967)	cpilsiB202
Lsi05G001890	Cucsa.049520	Cucumber (Gy14) v1	cgylsiB029
Lsi05G001890	CmaCh04G005150	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001890	CmoCh04G005540	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001890	Cla013045	Watermelon (97103) v1	lsiwmB361
Lsi05G001890	MELO3C019485	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001890	ClCG05G009760	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001890	MELO3C019485.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001890	Cla97C05G092130	Watermelon (97103) v2	lsiwmbB329
Lsi05G001890	Bhi01G001229	Wax gourd	lsiwgoB431
Lsi05G001890	Cp4.1LG01g01960	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001890	CsGy3G018680	Cucumber (Gy14) v2	cgyblsiB189
Lsi05G001890	Carg26429	Silver-seed gourd	carlsiB057
Lsi05G001890	CsaV3_3G018910	Cucumber (Chinese Long) v3	cuclsiB224

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001890	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001890	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001890	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001890	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001890	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001890	Cucumber (Chinese Long) v2	culsiB202
Lsi05G001890	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001890	Silver-seed gourd	carlsiB595
Lsi05G001890	Cucumber (Chinese Long) v3	cuclsiB230