Lsi04G019200 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G019200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cysteine-rich TM module stress tolerance protein
Location	chr04 : 26400561 .. 26402760 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTTTCGTAATTTAGAAAGGAAAAAAAACTAATATAATTACTTAGCTTCCTCTCTGTTGCTTGTGCATAGTGTAAAAAGCACCTACTCTCTCTCTCTGTCTTGATATTCTCTCTTCCTTTCACGCGGTTTCGCCGCCCTTGGTCGGCCCCTCTCCCACACCACTCTCTCCGCCGCCTCCAAATCTCTCCCCACATATTATAAATATATATCTACTCTTTCCTCAAATCATCAAACTTAAAGGAAGAAAAAAAAAAGGAATTATTATTTCTGATTTTCCTTTCCTCCTCTGTGAAGACTTGAAATTTTTGTTTTTATTTCATCTCTCTGATCTCTTGCAAACATGAGTTCCGCTCAGCCTGCAGGTGATTAATCGATTTGATTATATATTTATAATTTATTTGAGATTAATTCTATGCGATTGAATTTATTTATAATTTTTGTTTTATTAACTTTGGAATTTGTTTTATGGGTTTTTTTTGGGGGGGGGGGTTATGCGTAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGGTAATTACTAATTATCAATTATATTATACTTTAAATTTGGACATTAAACTTCATGGTCAAGAAATTTAAAGGGGAAAAAAAGAAATTATATTTTTCTAAATATTGTCAAAATCATAATATTGTATGATAGAAAATTAATTCTCTGCTCCCCAACCCAATCAAGAGAAAATTAGCATTTTTCTAAGAAATTTTTGTGAAGGGAGTAGCGTTATATAAATAATTAATTGTTTTTATTTCTTTTTTTAATTAAACAGAATTGTATTAGCTTCATCCCATTCATCCCATTTTGTTTGGGCTGTTTTTTAAATATATAAAAATGAGCTAAATTATTTACAAATATAGAAAAATTTTACTATCTATTGATCGCGATAGAACTCTATCACTAGGTGATAGATAGTGAAGTTTTTCTATAGTTTGATATTTTTTTTTGTTTATAATAATTTTTCTTTTCTTTACTTAGTAAAAGAAATAAAAAAAAATTATTATAAACAGAAAAAATATCAAATTATTTATAAATATAGAAAAATTTTATTATTTATCGCTCAAGTTATAAAATTCTATCACAATCTATCGCTGATGTTAAAAAAAATTTATATTTATAAATAATTTGACTCATTTTCTATATTTAAAAACAACTCAAAATAAAAATAATTTATTTTTTAAAAAAACAAAATGTACCAAGTTTTTCTCTAATTTAATTGCACTCTCTTACTTCTTTTTTTTCATAATTAGTTGTTGTAGTTTTTCTAATAAAAAAATTGTTTTCAAATATAGGAAAATGAACCAACATATTTATAAATATAGTAAAATTTTATTAAATTTTGCTATATTTCTAAATATTTTTAACAGTCTTGTCATTTAAAATAATTTTTCTAAAAAAGCTATAGGATTTGTTTTGTTTTGTTTTGTTTTAATTTCATCTAAGTTTAGTATACAATAATTTTGAAAACGTTTCTAGAATATGAGTAACGGAAACTATTATCAAATATTTATGTAAACATTAAAAACAATAAAGTAGGTTACCAAACGGGGTATATATATATATATATATGTTTAAATAATTGAAATTACGTGTTTGCAGTTGTGCTGCGTTGTGTTGCTGCTGCGTGTTGGATGCATGCTTCTAATCACTAGAAGTTCAACCCAACAAATTCTTAGAGATGATCGATATATATATCAGCATATTTATTGTCATTTTAGTGTTTTAATTTTAATTTTTCCTTTTTTTTGTGAATTTTTGGATTAATTATGTGATGATGTTGTAATAATAAATTTGGGTGTTGAAAAATCATGCTGATGAAATCATATTGGACTTCTGTGATCATATTACATGCTCTGTTTTTTTTTTTAAATTAATTATAATTTTTCTTGTGTGGAGTAGTTTAGTTTGATTTGTTTAAATATCCTCATGACACGTGGCGAACCACACGTGTGCATGGAAGAAGATAACTGATAAGGATGAAAGAGAGAATTTATTTATTTATTTATTTATTTATTTATTTGTATTTTGCTTGCTTATTCAATTTGGTTACGCATATTATTATATTCCC

mRNA sequence

GTATTTTCGTAATTTAGAAAGGAAAAAAAACTAATATAATTACTTAGCTTCCTCTCTGTTGCTTGTGCATAGTGTAAAAAGCACCTACTCTCTCTCTCTGTCTTGATATTCTCTCTTCCTTTCACGCGGTTTCGCCGCCCTTGGTCGGCCCCTCTCCCACACCACTCTCTCCGCCGCCTCCAAATCTCTCCCCACATATTATAAATATATATCTACTCTTTCCTCAAATCATCAAACTTAAAGGAAGAAAAAAAAAAGGAATTATTATTTCTGATTTTCCTTTCCTCCTCTGTGAAGACTTGAAATTTTTGTTTTTATTTCATCTCTCTGATCTCTTGCAAACATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGTTGTGCTGCGTTGTGTTGCTGCTGCGTGTTGGATGCATGCTTCTAATCACTAGAAGTTCAACCCAACAAATTCTTAGAGATGATCGATATATATATCAGCATATTTATTGTCATTTTAGTGTTTTAATTTTAATTTTTCCTTTTTTTTGTGAATTTTTGGATTAATTATGTGATGATGTTGTAATAATAAATTTGGGTGTTGAAAAATCATGCTGATGAAATCATATTGGACTTCTGTGATCATATTACATGCTCTGTTTTTTTTTTTAAATTAATTATAATTTTTCTTGTGTGGAGTAGTTTAGTTTGATTTGTTTAAATATCCTCATGACACGTGGCGAACCACACGTGTGCATGGAAGAAGATAACTGATAAGGATGAAAGAGAGAATTTATTTATTTATTTATTTATTTATTTATTTGTATTTTGCTTGCTTATTCAATTTGGTTACGCATATTATTATATTCCC

Coding sequence (CDS)

ATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGTTGTGCTGCGTTGTGTTGCTGCTGCGTGTTGGATGCATGCTTCTAA

Protein sequence

MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLDACF

Homology

[Close]

BLAST of Lsi04G019200 vs. TrEMBL
Match: A0A0A0L4C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618410 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-26
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MSSAQPAGV-YPPPS-TVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MSSAQPAGV YPPPS TVPTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKGCC
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTREGGDFS--TPVPAETKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCCVLDACF
Sbjct: 61 AALCCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. TrEMBL
Match: A9P8U8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-18
Identity = 51/73 (69.86%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 1  MSSAQPAGVYPPP--STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MS  Q    YPPP  ST P++Y+APPPAGYPT DG    Q  P+P ETKSRGDGFWKGCC
Sbjct: 1  MSQNQATVAYPPPPASTGPSAYSAPPPAGYPTMDGQTCQQD-PIPVETKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCC LDACF
Sbjct: 61 AALCCCCALDACF 72

[Close]

BLAST of Lsi04G019200 vs. TrEMBL
Match: M0U4Y1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-18
Identity = 51/66 (77.27%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 6  PAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCC 65
          P   YPPP   PT Y APPPAGYPTRDGG  S  APVP ETKSRGDGFWKGCCAALCCC 
Sbjct: 22 PPSSYPPPEQAPT-YVAPPPAGYPTRDGGLSS--APVPIETKSRGDGFWKGCCAALCCCW 81

Query: 66 VLDACF 72
          VLD CF
Sbjct: 82 VLDVCF 84

[Close]

BLAST of Lsi04G019200 vs. TrEMBL
Match: B9HD68_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02240g PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 1  MSSAQPAGVYPPP--STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MS  Q    YPPP  ST P++Y+ PPPAGYPT DG    Q  P+P +TKSRGDGFWKGCC
Sbjct: 1  MSQNQATVAYPPPPTSTYPSAYSGPPPAGYPTMDGQS-DQQNPIPVKTKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCC+ DACF
Sbjct: 61 AALCCCCLCDACF 72

[Close]

BLAST of Lsi04G019200 vs. TrEMBL
Match: M0S4L1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-16
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 1


Query: 10 YPPPSTV-PTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCCCVLD 69
          YPPP    P +Y APPPAGYPT DGG  +    VP ETKSRGDGFWKGCCAALCCCCVLD
Sbjct: 16 YPPPGQAYPPAYVAPPPAGYPTGDGGAVNSQQ-VPVETKSRGDGFWKGCCAALCCCCVLD 75

Query: 70 ACF 72
           CF
Sbjct: 76 MCF 77

[Close]

BLAST of Lsi04G019200 vs. TAIR10
Match: AT3G22240.1 (AT3G22240.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.3e-15
Identity = 41/65 (63.08%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 9  VYPPPSTVPTSYAAPPPAGYPTRDG--GDFSQPAPVPAETKSRGDGFWKGCCAALCCCCV 68
          V  P  T    Y +PPP GYPTRD   GD   P     ETKS+GDGFWKGCCAA+CCCCV
Sbjct: 11 VEKPSQTSSGPYTSPPPIGYPTRDAMVGD---PPAAAVETKSKGDGFWKGCCAAICCCCV 70

Query: 69 LDACF 72
          LDACF
Sbjct: 71 LDACF 72

[Close]

BLAST of Lsi04G019200 vs. TAIR10
Match: AT2G32190.1 (AT2G32190.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-14
Identity = 40/70 (57.14%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAAL 61
          S  Q +G YP P      Y  PPP GYPT    D S     P ETKS+GDGF KGC AA+
Sbjct: 5  SQNQSSGAYPTPPVSTGPYMTPPPLGYPT---SDISHATVAPVETKSKGDGFLKGCLAAM 64

Query: 62 CCCCVLDACF 72
          CCCCVLDACF
Sbjct: 65 CCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. TAIR10
Match: AT2G32210.1 (AT2G32210.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 7.4e-14
Identity = 40/70 (57.14%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAAL 61
          S  Q +G YP P      Y APPP GYPT D    S       ETKS+GDGF KGC AA+
Sbjct: 5  SQNQSSGAYPTPPVSTGPYVAPPPLGYPTNDT---SHATVATVETKSKGDGFLKGCLAAM 64

Query: 62 CCCCVLDACF 72
          CCCCVLDACF
Sbjct: 65 CCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. TAIR10
Match: AT1G05340.1 (AT1G05340.1 unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 7.7e-11
Identity = 37/67 (55.22%), Postives = 42/67 (62.69%), Query Frame = 1


Query: 5  QPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCC 64
          Q AG  PPP  + T  + PPP GYPT      S  A    ETKS+GDGF+KGC AA+CCC
Sbjct: 8  QSAGANPPPP-MSTCTSPPPPIGYPTNQPSHGSV-AQGKVETKSKGDGFFKGCLAAMCCC 67

Query: 65 CVLDACF 72
          C LD CF
Sbjct: 68 CALDICF 72

[Close]

BLAST of Lsi04G019200 vs. TAIR10
Match: AT2G32200.1 (AT2G32200.1 unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09
Identity = 37/72 (51.39%), Postives = 40/72 (55.56%), Query Frame = 1


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRG---DGFWKGCC 61
          S  Q AG YP P      Y APPP GYPT    D +     P ETKS+G   DGF KGC 
Sbjct: 5  SQNQYAGAYPTPPVSTGPYVAPPPLGYPT---NDTTHATVAPVETKSKGEAADGFLKGCL 64

Query: 62 AALCCCCVLDAC 71
          A +  CCVLDAC
Sbjct: 65 ATMLACCVLDAC 73

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: gi|659129418|ref|XP_008464677.1| (PREDICTED: CYSTM1 family protein B [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-29
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 1  MSSAQPAGV-YPPPS-TVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MSSAQPAGV YPPPS TVPTSY+APPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGCC
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTRDGGDFSQPNPVPAETKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCCVLDACF
Sbjct: 61 AALCCCCVLDACF 73

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: gi|700199818|gb|KGN54976.1| (hypothetical protein Csa_4G618410 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MSSAQPAGV-YPPPS-TVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MSSAQPAGV YPPPS TVPTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKGCC
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTREGGDFS--TPVPAETKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCCVLDACF
Sbjct: 61 AALCCCCVLDACF 71

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: gi|118481723|gb|ABK92801.1| (unknown [Populus trichocarpa])

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-18
Identity = 51/73 (69.86%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 1  MSSAQPAGVYPPP--STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MS  Q    YPPP  ST P++Y+APPPAGYPT DG    Q  P+P ETKSRGDGFWKGCC
Sbjct: 1  MSQNQATVAYPPPPASTGPSAYSAPPPAGYPTMDGQTCQQD-PIPVETKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCC LDACF
Sbjct: 61 AALCCCCALDACF 72

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: gi|224089821|ref|XP_002308824.1| (hypothetical protein POPTR_0006s02240g [Populus trichocarpa])

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-17
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 1  MSSAQPAGVYPPP--STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCC 60
          MS  Q    YPPP  ST P++Y+ PPPAGYPT DG    Q  P+P +TKSRGDGFWKGCC
Sbjct: 1  MSQNQATVAYPPPPTSTYPSAYSGPPPAGYPTMDGQS-DQQNPIPVKTKSRGDGFWKGCC 60

Query: 61 AALCCCCVLDACF 72
          AALCCCC+ DACF
Sbjct: 61 AALCCCCLCDACF 72

[Close]

BLAST of Lsi04G019200 vs. NCBI nr
Match: gi|672139593|ref|XP_008793583.1| (PREDICTED: CYSTM1 family protein A [Phoenix dactylifera])

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-17
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 1


Query: 6  PAGVYPPPSTV-PTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGCCAALCCC 65
          PA  YPPP    P +YAAPPPA YP ++GG+   P P PA+T++RGDGFWKGCCAALCCC
Sbjct: 17 PANAYPPPGQAYPPAYAAPPPASYPMKEGGE--NPQPAPAQTQNRGDGFWKGCCAALCCC 76

Query: 66 CVLDACF 72
          CVLD CF
Sbjct: 77 CVLDMCF 81

The following BLAST results are available for this feature:

BLAST of Lsi04G019200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G019200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4C6_CUCSA	1.1e-26	90.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G618410 PE=4 SV=1	[more]
A9P8U8_POPTR	2.5e-18	69.86	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
M0U4Y1_MUSAM	5.5e-18	77.27	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
B9HD68_POPTR	3.6e-17	65.75	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02240g PE=4 SV=1	[more]
M0S4L1_MUSAM	2.3e-16	73.02	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]

BLAST of Lsi04G019200 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22240.1	2.3e-15	63.08	unknown protein	[more]
AT2G32190.1	1.9e-14	57.14	unknown protein	[more]
AT2G32210.1	7.4e-14	57.14	unknown protein	[more]
AT1G05340.1	7.7e-11	55.22	unknown protein	[more]
AT2G32200.1	1.4e-09	51.39	unknown protein	[more]

BLAST of Lsi04G019200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129418\|ref\|XP_008464677.1\|	1.5e-29	94.52	PREDICTED: CYSTM1 family protein B [Cucumis melo]	[more]
gi\|700199818\|gb\|KGN54976.1\|	1.6e-26	90.41	hypothetical protein Csa_4G618410 [Cucumis sativus]	[more]
gi\|118481723\|gb\|ABK92801.1\|	3.6e-18	69.86	unknown [Populus trichocarpa]	[more]
gi\|224089821\|ref\|XP_002308824.1\|	5.2e-17	65.75	hypothetical protein POPTR_0006s02240g [Populus trichocarpa]	[more]
gi\|672139593\|ref\|XP_008793583.1\|	6.7e-17	67.16	PREDICTED: CYSTM1 family protein A [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0003006	developmental process involved in reproduction
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G019200.1	Lsi04G019200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 23..71 score: 1.2
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 1..71 score: 9.7
None	No IPR available	PANTHER	PTHR31568:SF16	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MMP21	coord: 1..71 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G019200	Csa4G618410	Cucumber (Chinese Long) v2	culsiB283
Lsi04G019200	CSPI04G21950	Wild cucumber (PI 183967)	cpilsiB283
Lsi04G019200	CmaCh09G007090	Cucurbita maxima (Rimu)	cmalsiB025
Lsi04G019200	MELO3C026402	Melon (DHL92) v3.5.1	lsimeB316
Lsi04G019200	ClCG11G016780	Watermelon (Charleston Gray)	lsiwcgB259
Lsi04G019200	MELO3C026402.2	Melon (DHL92) v3.6.1	lsimedB332
Lsi04G019200	Cla97C11G222710	Watermelon (97103) v2	lsiwmbB266
Lsi04G019200	Bhi09G002967	Wax gourd	lsiwgoB402
Lsi04G019200	Cp4.1LG06g05550	Cucurbita pepo (Zucchini)	cpelsiB639
Lsi04G019200	CsGy4G020460	Cucumber (Gy14) v2	cgyblsiB263
Lsi04G019200	CsaV3_4G032300	Cucumber (Chinese Long) v3	cuclsiB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G019200	Cucumber (Gy14) v1	cgylsiB047
Lsi04G019200	Cucurbita maxima (Rimu)	cmalsiB427
Lsi04G019200	Cucurbita moschata (Rifu)	cmolsiB013
Lsi04G019200	Cucurbita moschata (Rifu)	cmolsiB415
Lsi04G019200	Cucurbita pepo (Zucchini)	cpelsiB456
Lsi04G019200	Cucurbita pepo (Zucchini)	cpelsiB465
Lsi04G019200	Wild cucumber (PI 183967)	cpilsiB297
Lsi04G019200	Cucumber (Chinese Long) v2	culsiB296
Lsi04G019200	Watermelon (97103) v1	lsiwmB333
Lsi04G019200	Silver-seed gourd	carlsiB582
Lsi04G019200	Cucumber (Chinese Long) v3	cuclsiB317