Lsi04G018850 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G018850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	60S ribosomal protein L18a
Location	chr04 : 25975302 .. 25978889 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATTTTGGCTATCGGCCGTCGAGAGGATTAAATCGAAGCACCGATCTCTCTCAGATCTTCGAGTTCAAAATGGTCACATTCAGGGTGAATACTCAGATTTTCTCGAGTCGATTTTTTTTTTTACGTTATTTTTTGTAACAAATTTTATTTCTGATAAGAATGCGTTATAGCTGGTCATTAGATTCACTCCTTCCACTTGGAAGTGAATTTGCAAGACATTGATCTGTTTGTTTGTTTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTCCCGGGAAGCAGTTTCACCAGTACCAGGTCGTCGGGAGGGCTCTTCCTTCTGAGGCGGACGAGCATCCCAAGATCTATCGGATGAAGCTATGGGCTACCAACGAAGTCCGTGCAAAATCCAAGTTCTGGTATGTTGTTGTTCATTCCGTTGATGTTTATTTATCGTTTTGATTGGTTACTGGTAGAAAATGCAGTGGAAAAATGGAGTTTTATTTATTTACAGTTTTAAAAAGATTATTTTTATGTTGTTTCTACAGTCTTGGTTCACGTAGTTAGAAGGTTTATTAGTGTATTTGGTGTTTTCAACGTGATTCTTTCTACAAATTCAGGAGGGGGTTCTGAATAATTATGCATTGCTTGATCCTGTAATTTTATTTTTTTATAGTTACGCAATGAGGTTCTATTCGTGGGTTTTAGTTCTTTCAATATCATTTTTTTCTGCAAATACAGGAAGAGGTTTGAATAATTATGGTTATTTGATCACATAATCCTAGTTCAGTAGTTCGTATAATTACACAATAAGGTTTATCGTTGGATCTAATATTCAGACGTATAAGGCAAAAATAATAATAATAATAATAATAACCAAACTCCAAGCTGAACTTTAGAAGCTATAGAAAGTAGTTTTCGAGAACTTGTTTTGTCTTTGACATTTTGGTCATGATTCAAATGTGTTTTTAAGAAAGGTGGAAAACACATCAAAGAAATTGTGTGAAAACAAGCTTAATTTTTGAGATGAAAAAGAAACACTGAAAACATGGTCTTTATCAGATGGAACCTTAGTGTTTCAGCATTCACATATATGCTAGATTTAAATTTCAAAGTTGTTTCTCCTTGGAGAATTTAAGTATTTAATCCGTTTCCTTTCCCAAGGTACTTCTATTTAAGTATTGGGTAGTTTTTTTAGCCATACTTGTTGATTTGGGGGAGATGAAGTTCATAGCCTGATTTCTTGATCCTCCATCTGGATAGGTACTTTTTGAGGAAATTGAAGAAAGTCAAGAAGAGCAATGGTCAGATTCTTGCTATTAATGAGGTATTGGGTCTGGAACACGCTTTCATACTCTTCTCTATTTTATAGACATGATGTTTGGCATATCATTCCTCAAAATGAAAAAAATTTGATAATGTCAGATTTAATTCATTATTGAATGTCTACCAGACTTGATGTATGCTTGCTATTGTTGTTATACATTTCATAATGCGTGCGAGTTTCTTCATAAGCTTTCCTGCGTTCCTGGAATATGTAATGCATAAATATGTATACATACATTTTTTTGTGCATTTGAAGCATTTGCTGTTCAATATGATATGAATGGTTGCTCCTGAGTGAACTTCCAAAAATGTTGTACGTTGCCTTCTGAATGATGATGACTTTATTGGTTTAAATTTCTATTTGATTACTTTTATTTCCTATATAGTCGTTTTTGCCTCCATGTTCTCAATCATAATACAATTAGTAATTCTCGCATCCATCTTGCAATTTGTAGATTTTTGAAAAGAACCCAACAAAGATCAAGAACTACGGCATTTGGCTGCGGTACCAGAGCCGAACTGGTTATCACAACATGTATAAGGAGTACCGGGACACAACACTGAACGGGGCTGTCGAGCAAATGTATACCGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCGTGCATCCAAATCATTAAGACAGCAACCGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACAAAGCAGTTCCATGACTCAAAGATCAAATTCCCGTTGGTGTTTAAGAAGGTGAGGCCACCCACCAGGAAGCTCAAAACAACATACAAAGCATCTAGGCCCAACTTGTTCATGTAATTATGCTCATCTTTGGCTTCTCTTCCATGGAAACATTTGATTATTATTGATATGGCTAGATTATAGAAACTTTGAGAAGTAGATGAAATTTCTTCAAAACCATTCGTTTTTCTAGCACAATTATTCCTCTGTTATGGAGTTTGTGAGATGAGTTTTGACAATTTTGGTTGGATTAATCTAAAGCAAATTTTCTTGCCTTTCTGTTTTTGAGGCTTTGTTTCTGAAGTGTTGGAAGTTGCAGTATTGAATTGTTTTATTT

mRNA sequence

AGCATTTTGGCTATCGGCCGTCGAGAGGATTAAATCGAAGCACCGATCTCTCTCAGATCTTCGAGTTCAAAATGGTCACATTCAGGTTTCACCAGTACCAGGTCGTCGGGAGGGCTCTTCCTTCTGAGGCGGACGAGCATCCCAAGATCTATCGGATGAAGCTATGGGCTACCAACGAAGTCCGTGCAAAATCCAAGTTCTGGTACTTTTTGAGGAAATTGAAGAAAGTCAAGAAGAGCAATGGTCAGATTCTTGCTATTAATGAGATTTTTGAAAAGAACCCAACAAAGATCAAGAACTACGGCATTTGGCTGCGGTACCAGAGCCGAACTGGTTATCACAACATGTATAAGGAGTACCGGGACACAACACTGAACGGGGCTGTCGAGCAAATGTATACCGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCGTGCATCCAAATCATTAAGACAGCAACCGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACAAAGCAGTTCCATGACTCAAAGATCAAATTCCCGTTGGTGTTTAAGAAGGTGAGGCCACCCACCAGGAAGCTCAAAACAACATACAAAGCATCTAGGCCCAACTTGTTCATGTAATTATGCTCATCTTTGGCTTCTCTTCCATGGAAACATTTGATTATTATTGATATGGCTAGATTATAGAAACTTTGAGAAGTAGATGAAATTTCTTCAAAACCATTCGTTTTTCTAGCACAATTATTCCTCTGTTATGGAGTTTGTGAGATGAGTTTTGACAATTTTGGTTGGATTAATCTAAAGCAAATTTTCTTGCCTTTCTGTTTTTGAGGCTTTGTTTCTGAAGTGTTGGAAGTTGCAGTATTGAATTGTTTTATTT

Coding sequence (CDS)

ATGGTCACATTCAGGTTTCACCAGTACCAGGTCGTCGGGAGGGCTCTTCCTTCTGAGGCGGACGAGCATCCCAAGATCTATCGGATGAAGCTATGGGCTACCAACGAAGTCCGTGCAAAATCCAAGTTCTGGTACTTTTTGAGGAAATTGAAGAAAGTCAAGAAGAGCAATGGTCAGATTCTTGCTATTAATGAGATTTTTGAAAAGAACCCAACAAAGATCAAGAACTACGGCATTTGGCTGCGGTACCAGAGCCGAACTGGTTATCACAACATGTATAAGGAGTACCGGGACACAACACTGAACGGGGCTGTCGAGCAAATGTATACCGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCGTGCATCCAAATCATTAAGACAGCAACCGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACAAAGCAGTTCCATGACTCAAAGATCAAATTCCCGTTGGTGTTTAAGAAGGTGAGGCCACCCACCAGGAAGCTCAAAACAACATACAAAGCATCTAGGCCCAACTTGTTCATGTAA

Protein sequence

MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM

Homology

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BLAST of Lsi04G018850 vs. Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 2.2e-93
Identity = 165/178 (92.70%), Postives = 172/178 (96.63%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGR LPSE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRES+KQFH+SKIKFPLV +K+RPP+RKLKT YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=2 SV=2)

HSP 1 Score: 335.5 bits (859), Expect = 3.6e-91
Identity = 162/178 (91.01%), Postives = 171/178 (96.07%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.0e-90
Identity = 160/175 (91.43%), Postives = 167/175 (95.43%), Query Frame = 1


Query: 4   FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAI 63
           FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           QIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

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BLAST of Lsi04G018850 vs. Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=1 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.1e-90
Identity = 161/178 (90.45%), Postives = 167/178 (93.82%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M  FRFHQYQVVGR LP+  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. Swiss-Prot
Match: R18A1_ARATH (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 2.8e-88
Identity = 157/178 (88.20%), Postives = 167/178 (93.82%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

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BLAST of Lsi04G018850 vs. TrEMBL
Match: A0A0A0KIJ4_CUCSA (60S ribosomal protein L18a OS=Cucumis sativus GN=Csa_6G522810 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.7e-95
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFK VRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. TrEMBL
Match: A9PA10_POPTR (60S ribosomal protein L18a OS=Populus trichocarpa GN=POPTR_1064s00200g PE=2 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 3.7e-95
Identity = 171/178 (96.07%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. TrEMBL
Match: A0A067E2Q9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028910mg PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 6.3e-95
Identity = 171/178 (96.07%), Postives = 176/178 (98.88%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 25  MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 85  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQII+TAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM
Sbjct: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202

[Close]

BLAST of Lsi04G018850 vs. TrEMBL
Match: A0A0S3S3B8_PHAAN (60S ribosomal protein L18a OS=Vigna angularis var. angularis GN=Vigan.05G069200 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 8.2e-95
Identity = 169/178 (94.94%), Postives = 176/178 (98.88%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+EAD+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKA +PNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. TrEMBL
Match: A0A0L9VES3_PHAAN (60S ribosomal protein L18a OS=Phaseolus angularis GN=LR48_Vigan09g220900 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 8.2e-95
Identity = 169/178 (94.94%), Postives = 176/178 (98.88%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+EAD+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKA +PNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. TAIR10
Match: AT2G34480.1 (AT2G34480.1 Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 335.5 bits (859), Expect = 2.0e-92
Identity = 162/178 (91.01%), Postives = 171/178 (96.07%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. TAIR10
Match: AT3G14600.1 (AT3G14600.1 Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 332.4 bits (851), Expect = 1.7e-91
Identity = 160/175 (91.43%), Postives = 167/175 (95.43%), Query Frame = 1


Query: 4   FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAI 63
           FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           QIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. TAIR10
Match: AT1G29965.1 (AT1G29965.1 Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 325.9 bits (834), Expect = 1.6e-89
Identity = 157/178 (88.20%), Postives = 167/178 (93.82%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1)

HSP 1 Score: 322.4 bits (825), Expect = 1.8e-88
Identity = 155/172 (90.12%), Postives = 165/172 (95.93%), Query Frame = 1


Query: 7   HQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEI 66
           HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LAINEI
Sbjct: 141 HQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEI 200

Query: 67  FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCIQII 126
           FEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQII
Sbjct: 201 FEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQII 260

Query: 127 KTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           KTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA++PNLFM
Sbjct: 261 KTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

[Close]

BLAST of Lsi04G018850 vs. NCBI nr
Match: gi|659130979|ref|XP_008465452.1| (PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Cucumis melo])

HSP 1 Score: 360.9 bits (925), Expect = 1.3e-96
Identity = 174/178 (97.75%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI
Sbjct: 574 MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 633

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC
Sbjct: 634 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 693

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLV+KKVRPPTRKLKTTYKAS+PNLFM
Sbjct: 694 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFM 751

[Close]

BLAST of Lsi04G018850 vs. NCBI nr
Match: gi|778730888|ref|XP_011659876.1| (PREDICTED: 60S ribosomal protein L18a [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-95
Identity = 172/178 (96.63%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. NCBI nr
Match: gi|659068370|ref|XP_008444078.1| (PREDICTED: 60S ribosomal protein L18a [Cucumis melo])

HSP 1 Score: 356.7 bits (914), Expect = 2.4e-95
Identity = 171/178 (96.07%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKL+TTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLRTTYKASKPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. NCBI nr
Match: gi|449433696|ref|XP_004134633.1| (PREDICTED: 60S ribosomal protein L18a [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.4e-95
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFK VRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Lsi04G018850 vs. NCBI nr
Match: gi|566254205|ref|XP_006387417.1| (60S ribosomal protein L18a-1 [Populus trichocarpa])

HSP 1 Score: 355.5 bits (911), Expect = 5.3e-95
Identity = 171/178 (96.07%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

The following BLAST results are available for this feature:

BLAST of Lsi04G018850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL18A_CASSA	2.2e-93	92.70	60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1	[more]
R18A2_ARATH	3.6e-91	91.01	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=2 SV=2	[more]
R18A3_ARATH	3.0e-90	91.43	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1	[more]
RL18A_ORYSJ	5.1e-90	90.45	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=1 SV=1	[more]
R18A1_ARATH	2.8e-88	88.20	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=1	[more]

BLAST of Lsi04G018850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIJ4_CUCSA	1.7e-95	97.75	60S ribosomal protein L18a OS=Cucumis sativus GN=Csa_6G522810 PE=3 SV=1	[more]
A9PA10_POPTR	3.7e-95	96.07	60S ribosomal protein L18a OS=Populus trichocarpa GN=POPTR_1064s00200g PE=2 SV=1	[more]
A0A067E2Q9_CITSI	6.3e-95	96.07	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028910mg PE=3 SV=1	[more]
A0A0S3S3B8_PHAAN	8.2e-95	94.94	60S ribosomal protein L18a OS=Vigna angularis var. angularis GN=Vigan.05G069200 ...	[more]
A0A0L9VES3_PHAAN	8.2e-95	94.94	60S ribosomal protein L18a OS=Phaseolus angularis GN=LR48_Vigan09g220900 PE=3 SV...	[more]

BLAST of Lsi04G018850 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34480.1	2.0e-92	91.01	Ribosomal protein L18ae/LX family protein	[more]
AT3G14600.1	1.7e-91	91.43	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	1.6e-89	88.20	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	1.8e-88	90.12	60S ribosomal protein L18A-1	[more]

BLAST of Lsi04G018850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130979\|ref\|XP_008465452.1\|	1.3e-96	97.75	PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Cucumis melo]	[more]
gi\|778730888\|ref\|XP_011659876.1\|	1.1e-95	96.63	PREDICTED: 60S ribosomal protein L18a [Cucumis sativus]	[more]
gi\|659068370\|ref\|XP_008444078.1\|	2.4e-95	96.07	PREDICTED: 60S ribosomal protein L18a [Cucumis melo]	[more]
gi\|449433696\|ref\|XP_004134633.1\|	2.4e-95	97.75	PREDICTED: 60S ribosomal protein L18a [Cucumis sativus]	[more]
gi\|566254205\|ref\|XP_006387417.1\|	5.3e-95	96.07	60S ribosomal protein L18a-1 [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR023573	Ribosomal_L18a//L18Ae/LX
IPR021138	Ribosomal_L18a/L20_eukaryotes

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006558	L-phenylalanine metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006570	tyrosine metabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003868	4-hydroxyphenylpyruvate dioxygenase activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004190	aspartic-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G018850.1	Lsi04G018850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIR	PIRSF002190	Ribosomal_L18a	coord: 1..178 score: 3.5
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 7..128 score: 2.5
None	No IPR available	GENE3D	G3DSA:3.10.20.10		coord: 75..138 score: 4.
None	No IPR available	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 1..178 score: 1.8E
None	No IPR available	PANTHER	PTHR10052:SF12	SUBFAMILY NOT NAMED	coord: 1..178 score: 1.8E
None	No IPR available	unknown	SSF160374	RplX-like	coord: 71..146 score: 1.96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G018850	Csa4G608120	Cucumber (Chinese Long) v2	culsiB283
Lsi04G018850	CSPI04G21630	Wild cucumber (PI 183967)	cpilsiB283
Lsi04G018850	Cucsa.058840	Cucumber (Gy14) v1	cgylsiB047
Lsi04G018850	CmaCh01G013140	Cucurbita maxima (Rimu)	cmalsiB427
Lsi04G018850	CmaCh09G007290	Cucurbita maxima (Rimu)	cmalsiB025
Lsi04G018850	CmoCh09G007230	Cucurbita moschata (Rifu)	cmolsiB013
Lsi04G018850	Cla023235	Watermelon (97103) v1	lsiwmB333
Lsi04G018850	MELO3C026973	Melon (DHL92) v3.5.1	lsimeB318
Lsi04G018850	ClCG11G016510	Watermelon (Charleston Gray)	lsiwcgB259
Lsi04G018850	MELO3C026973.2	Melon (DHL92) v3.6.1	lsimedB334
Lsi04G018850	Cla97C11G222440	Watermelon (97103) v2	lsiwmbB266
Lsi04G018850	Bhi09G003007	Wax gourd	lsiwgoB402
Lsi04G018850	Cp4.1LG02g02540	Cucurbita pepo (Zucchini)	cpelsiB465
Lsi04G018850	CsGy4G020150	Cucumber (Gy14) v2	cgyblsiB263
Lsi04G018850	Carg20047	Silver-seed gourd	carlsiB954
Lsi04G018850	CsaV3_4G031960	Cucumber (Chinese Long) v3	cuclsiB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G018850	Silver-seed gourd	carlsiB285
Lsi04G018850	Cucurbita moschata (Rifu)	cmolsiB415
Lsi04G018850	Cucurbita pepo (Zucchini)	cpelsiB458
Lsi04G018850	Cucurbita pepo (Zucchini)	cpelsiB639
Lsi04G018850	Melon (DHL92) v3.6.1	lsimedB340