Lsi04G018510 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G018510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Copper amine oxidase family protein
Location	chr04 : 25629651 .. 25629944 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTCCCCTTATCACTCTCATTCTTCTTCTTCACTCCCTCTCTCTAATATCATCAAGGCCACTGCATGACATTCATCCATTGGCCTCTGCCGCCATTGCGGTCGTCTCCGTTAATCGCCATGCTATAAAGCCTCCTGCTCCGGTATCGATGTCGTCGTTCTCGATAAACCGGTATAAATATGTCGAAATGGACGCATTCCGACCAACCTCGCCCGGGCATAGCCCCGGGGTTGGCCACAAGAATCCACCTGGTCAGCCGTAG

mRNA sequence

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTCCCCTTATCACTCTCATTCTTCTTCTTCACTCCCTCTCTCTAATATCATCAAGGCCACTGCATGACATTCATCCATTGGCCTCTGCCGCCATTGCGGTCGTCTCCGTTAATCGCCATGCTATAAAGCCTCCTGCTCCGGTATCGATGTCGTCGTTCTCGATAAACCGGTATAAATATGTCGAAATGGACGCATTCCGACCAACCTCGCCCGGGCATAGCCCCGGGGTTGGCCACAAGAATCCACCTGGTCAGCCGTAG

Coding sequence (CDS)

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTCCCCTTATCACTCTCATTCTTCTTCTTCACTCCCTCTCTCTAATATCATCAAGGCCACTGCATGACATTCATCCATTGGCCTCTGCCGCCATTGCGGTCGTCTCCGTTAATCGCCATGCTATAAAGCCTCCTGCTCCGGTATCGATGTCGTCGTTCTCGATAAACCGGTATAAATATGTCGAAATGGACGCATTCCGACCAACCTCGCCCGGGCATAGCCCCGGGGTTGGCCACAAGAATCCACCTGGTCAGCCGTAG

Protein sequence

MAHRSLHLNNLFPLITLILLLHSLSLISSRPLHDIHPLASAAIAVVSVNRHAIKPPAPVSMSSFSINRYKYVEMDAFRPTSPGHSPGVGHKNPPGQP

Homology

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BLAST of Lsi04G018510 vs. TrEMBL
Match: A0A0A0KWX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G244900 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-26
Identity = 69/101 (68.32%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 1  MAHRSLHLNNLFPLITL---ILLLHSLSLISSRPLHDIHPLASAAIAVVSVNRHAIKPPA 60
          MAHRSLHLN+ FPL+ L   +LLLHSL + SSRPLH IHP           N HAI PPA
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHP----------HNPHAITPPA 60

Query: 61 PVSM-SSFSINRYKYVEMDAFRPTSPGHSPGVGHKNPPGQP 98
          PVS+ +SFSINRYKYVE DAFRPTSPGHSPGVGH  PPG+P
Sbjct: 61 PVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 91

[Close]

BLAST of Lsi04G018510 vs. TrEMBL
Match: W9S854_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021337 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 15 ITLILLLHSLSLISS-RPLHDIHPLASAAIAVVSVNRHAIKPPAPVSMSSFSINRYKYVE 74
          + ++LLLHS+   SS RPLH +HP     + V+    +  KP  P S   FS+N YK  E
Sbjct: 14 MAVLLLLHSIGFTSSSRPLHVVHP----PVNVLGGPPYKSKPRPP-STKWFSVNHYKIAE 73

Query: 75 MDAFRPTSPGHSPGVGHKNPP 95
           DAFRPT+PGHSPGVGH +PP
Sbjct: 74 TDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of Lsi04G018510 vs. TrEMBL
Match: F6HJ28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00620 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-09
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 2  AHRSLHLNNLFPLITLILLLHSLSLISSRPLHDIHPLASAAIAVVSVNRHAIKPPAPVSM 61
          ++  +H+ +LF +I LIL  H   + +SRPL    P         ++   A +   P+S+
Sbjct: 3  SYHRIHMLSLF-IIPLILQQHVELITASRPLEVYSP---------AIPGDASRKLEPLSI 62

Query: 62 SSFSINRYKYVEMDAFRPTSPGHSPGVGHKNPPGQP 98
            F INR+K VE DA+RPTSPGHSPGVGH  PPG P
Sbjct: 63 HEFVINRFKMVETDAYRPTSPGHSPGVGHLAPPGAP 88

[Close]

BLAST of Lsi04G018510 vs. TrEMBL
Match: B9S1S2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0867620 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-09
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1  MAHRSLHLNNLFPLITLILLLHSLSLISSRPLHDIHPLASAAIAVVSVNRHAIKPPAPVS 60
          MA+R+  L  LF +  L+L  H  S ++SRPLH +HP A        +++ ++K P P S
Sbjct: 1  MANRAFLLT-LFAISFLLLHQHLDSAVASRPLH-MHPPAI-------ISQGSLKRPLPPS 60

Query: 61 MSS-FSINRYKYVEMDAFRPTSPGHSPGVGHKNPPGQP 98
           +  +SINR+K+ E +AFRPT+PGHS GVGH NPP  P
Sbjct: 61 TALLYSINRHKFTETEAFRPTAPGHSSGVGHGNPPAAP 89

[Close]

BLAST of Lsi04G018510 vs. TrEMBL
Match: M5WX34_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021649mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 12 FPLITLILLLHSLSLISSRPLH-DIHPLASAAIAVVSVNRHAIKPPAPVSMSSFSINRYK 71
          F ++ L+L  +S  + +SRPLH   HP    AI + S+N+     P P S+  F+INRYK
Sbjct: 10 FFMVALLLGQNSDLVAASRPLHLHTHP---PAIHIGSLNK-----PIPPSIGRFTINRYK 69

Query: 72 YVEM----DAFRPTSPGHSPGVGHKNPPG 96
            E     DAFRPTSPGHSPGVGH++PPG
Sbjct: 70 MTESSSGADAFRPTSPGHSPGVGHQDPPG 90

[Close]

BLAST of Lsi04G018510 vs. TAIR10
Match: AT2G35612.1 (AT2G35612.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 52.0 bits (123), Expect = 2.4e-07
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1


Query: 54 KPPAPVSMSSFSINRYKYVEMDAFRPTSPGHSPGVGHKNPPGQP 98
          +PP    +    INR+K +E DAFRPT  G S G+GHKNPPG P
Sbjct: 43 EPPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

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BLAST of Lsi04G018510 vs. NCBI nr
Match: gi|700198835|gb|KGN53993.1| (hypothetical protein Csa_4G244900 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 6.4e-26
Identity = 69/101 (68.32%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 1  MAHRSLHLNNLFPLITL---ILLLHSLSLISSRPLHDIHPLASAAIAVVSVNRHAIKPPA 60
          MAHRSLHLN+ FPL+ L   +LLLHSL + SSRPLH IHP           N HAI PPA
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHP----------HNPHAITPPA 60

Query: 61 PVSM-SSFSINRYKYVEMDAFRPTSPGHSPGVGHKNPPGQP 98
          PVS+ +SFSINRYKYVE DAFRPTSPGHSPGVGH  PPG+P
Sbjct: 61 PVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 91

[Close]

BLAST of Lsi04G018510 vs. NCBI nr
Match: gi|703156681|ref|XP_010111512.1| (hypothetical protein L484_021337 [Morus notabilis])

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-09
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1


Query: 15 ITLILLLHSLSLISS-RPLHDIHPLASAAIAVVSVNRHAIKPPAPVSMSSFSINRYKYVE 74
          + ++LLLHS+   SS RPLH +HP     + V+    +  KP  P S   FS+N YK  E
Sbjct: 14 MAVLLLLHSIGFTSSSRPLHVVHP----PVNVLGGPPYKSKPRPP-STKWFSVNHYKIAE 73

Query: 75 MDAFRPTSPGHSPGVGHKNPP 95
           DAFRPT+PGHSPGVGH +PP
Sbjct: 74 TDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of Lsi04G018510 vs. NCBI nr
Match: gi|223540983|gb|EEF42541.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1  MAHRSLHLNNLFPLITLILLLHSLSLISSRPLHDIHPLASAAIAVVSVNRHAIKPPAPVS 60
          MA+R+  L  LF +  L+L  H  S ++SRPLH +HP A        +++ ++K P P S
Sbjct: 1  MANRAFLLT-LFAISFLLLHQHLDSAVASRPLH-MHPPAI-------ISQGSLKRPLPPS 60

Query: 61 MSS-FSINRYKYVEMDAFRPTSPGHSPGVGHKNPPGQP 98
           +  +SINR+K+ E +AFRPT+PGHS GVGH NPP  P
Sbjct: 61 TALLYSINRHKFTETEAFRPTAPGHSSGVGHGNPPAAP 89

[Close]

BLAST of Lsi04G018510 vs. NCBI nr
Match: gi|595851677|ref|XP_007210161.1| (hypothetical protein PRUPE_ppa021649mg [Prunus persica])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 12 FPLITLILLLHSLSLISSRPLH-DIHPLASAAIAVVSVNRHAIKPPAPVSMSSFSINRYK 71
          F ++ L+L  +S  + +SRPLH   HP    AI + S+N+     P P S+  F+INRYK
Sbjct: 10 FFMVALLLGQNSDLVAASRPLHLHTHP---PAIHIGSLNK-----PIPPSIGRFTINRYK 69

Query: 72 YVEM----DAFRPTSPGHSPGVGHKNPPG 96
            E     DAFRPTSPGHSPGVGH++PPG
Sbjct: 70 MTESSSGADAFRPTSPGHSPGVGHQDPPG 90

[Close]

BLAST of Lsi04G018510 vs. NCBI nr
Match: gi|567908217|ref|XP_006446422.1| (hypothetical protein CICLE_v10017790mg [Citrus clementina])

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-08
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 11 LFPLITLILLLHSLSLIS-SRPLHDIHPLASAAIAVVSVNRHAIKPPAPVSMSSFSINRY 70
          +  L+ ++LL  S  LIS SRP H IHP      ++++     +KPP   S  +++ NRY
Sbjct: 7  MLTLLVVLLLSKSFDLISASRPPH-IHPPTIPRGSLLN----KVKPP---SFHAYTANRY 66

Query: 71 KYVEMDAFRPTSPGHSPGVGHKNPPG 96
          K  E +AFRPTSPGHSPGVGHK PPG
Sbjct: 67 KLTESEAFRPTSPGHSPGVGHKGPPG 84

The following BLAST results are available for this feature:

BLAST of Lsi04G018510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G018510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0_CUCSA	4.4e-26	68.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G244900 PE=4 SV=1	[more]
W9S854_9ROSA	1.3e-09	50.62	Uncharacterized protein OS=Morus notabilis GN=L484_021337 PE=4 SV=1	[more]
F6HJ28_VITVI	8.4e-09	43.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00620 PE=4 SV=...	[more]
B9S1S2_RICCO	8.4e-09	45.92	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0867620 PE=4 SV=1	[more]
M5WX34_PRUPE	1.1e-08	49.44	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021649mg PE=4 SV=1	[more]

BLAST of Lsi04G018510 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35612.1	2.4e-07	54.55	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Lsi04G018510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198835\|gb\|KGN53993.1\|	6.4e-26	68.32	hypothetical protein Csa_4G244900 [Cucumis sativus]	[more]
gi\|703156681\|ref\|XP_010111512.1\|	1.9e-09	50.62	hypothetical protein L484_021337 [Morus notabilis]	[more]
gi\|223540983\|gb\|EEF42541.1\|	1.2e-08	45.92	conserved hypothetical protein [Ricinus communis]	[more]
gi\|595851677\|ref\|XP_007210161.1\|	1.6e-08	49.44	hypothetical protein PRUPE_ppa021649mg [Prunus persica]	[more]
gi\|567908217\|ref\|XP_006446422.1\|	6.0e-08	48.84	hypothetical protein CICLE_v10017790mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048364	root development

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048364	root development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G018510.1	Lsi04G018510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33348:SF2	SUBFAMILY NOT NAMED	coord: 11..97 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G018510	Csa4G244900	Cucumber (Chinese Long) v2	culsiB294
Lsi04G018510	CSPI04G12230	Wild cucumber (PI 183967)	cpilsiB295
Lsi04G018510	CmaCh01G013530	Cucurbita maxima (Rimu)	cmalsiB434
Lsi04G018510	Cla023204	Watermelon (97103) v1	lsiwmB333
Lsi04G018510	MELO3C010530	Melon (DHL92) v3.5.1	lsimeB324
Lsi04G018510	ClCG11G016150	Watermelon (Charleston Gray)	lsiwcgB259
Lsi04G018510	MELO3C010530.2	Melon (DHL92) v3.6.1	lsimedB340
Lsi04G018510	Cla97C11G222100	Watermelon (97103) v2	lsiwmbB266
Lsi04G018510	Bhi09G002290	Wax gourd	lsiwgoB397
Lsi04G018510	Cp4.1LG02g02860	Cucurbita pepo (Zucchini)	cpelsiB458

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G018510	Cucumber (Gy14) v1	cgylsiB427
Lsi04G018510	Cucurbita maxima (Rimu)	cmalsiB025
Lsi04G018510	Cucurbita moschata (Rifu)	cmolsiB013
Lsi04G018510	Cucurbita moschata (Rifu)	cmolsiB424
Lsi04G018510	Cucurbita pepo (Zucchini)	cpelsiB639
Lsi04G018510	Cucumber (Gy14) v2	cgyblsiB272
Lsi04G018510	Silver-seed gourd	carlsiB612
Lsi04G018510	Silver-seed gourd	carlsiB954
Lsi04G018510	Cucumber (Chinese Long) v3	cuclsiB316
Lsi04G018510	Wax gourd	lsiwgoB403