ClCG11G016150 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G016150
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Copper amine oxidase family protein LENGTH=741
Location	CG_Chr11 : 29449321 .. 29449848 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTTCCCTTATCACTCTCATTCTTCTTCTTCACTCCATCTCTCTAACATCATCAAGGCCATTGCATGACATTCATCCATTGGCCTCAGCCTCTGCCATTGCAGTCGTCGACCGTAATCGTCGTGCTATAACGCCTCCTGCTCCAGTATCAGCGTTGTCGTTCTCGATAAACCGGCATAAATATGTCGAAATGGACGCATTCCGACCGACCTCGCCCGGGCATAGCCCTGGGGTTGGCCACACGGATCCACCAGGTAGGCCATAGCGGTCTCGCCGGAGCTGCATCTGTTCGGCCGGAGTTTTTGGCAATGTGATTGTGTGTGTGTCTTTCTTCTGTTTGGACAATGATTTTGGGATTGTGTTTTGTAATGTACTTCCCTTTTTTGTGTGTGTTTTTTTCAGTGAAAGTTTACTGCATCATTTACTTTTTTTTGTTTTTTTGTTTTTTGCTCTTCCTCTTTCATATTTATATATAGTTTTCTTTTCCTCAAAATAA

mRNA sequence

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTTCCCTTATCACTCTCATTCTTCTTCTTCACTCCATCTCTCTAACATCATCAAGGCCATTGCATGACATTCATCCATTGGCCTCAGCCTCTGCCATTGCAGTCGTCGACCGTAATCGTCGTGCTATAACGCCTCCTGCTCCAGTATCAGCGTTGTCGTTCTCGATAAACCGGCATAAATATGTCGAAATGGACGCATTCCGACCGACCTCGCCCGGGCATAGCCCTGGGGTTGGCCACACGGATCCACCAGTTTTCTTTTCCTCAAAATAA

Coding sequence (CDS)

ATGGCTCATAGAAGCTTACATTTGAATAACTTGTTTTCCCTTATCACTCTCATTCTTCTTCTTCACTCCATCTCTCTAACATCATCAAGGCCATTGCATGACATTCATCCATTGGCCTCAGCCTCTGCCATTGCAGTCGTCGACCGTAATCGTCGTGCTATAACGCCTCCTGCTCCAGTATCAGCGTTGTCGTTCTCGATAAACCGGCATAAATATGTCGAAATGGACGCATTCCGACCGACCTCGCCCGGGCATAGCCCTGGGGTTGGCCACACGGATCCACCAGTTTTCTTTTCCTCAAAATAA

Protein sequence

MAHRSLHLNNLFSLITLILLLHSISLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFSINRHKYVEMDAFRPTSPGHSPGVGHTDPPVFFSSK

Homology

[Close]

BLAST of ClCG11G016150 vs. TrEMBL
Match: A0A0A0KWX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G244900 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-25
Identity = 65/99 (65.66%), Postives = 72/99 (72.73%), Query Frame = 1


Query: 1  MAHRSLHLNNLFSLITLILLL---HSISLTSSRPLHDIHPLASASAIAVVDRNRRAITPP 60
          MAHRSLHLN+ F L+ L+LLL   HS+ +TSSRPLH IHP            N  AITPP
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHP-----------HNPHAITPP 60

Query: 61 APVSA-LSFSINRHKYVEMDAFRPTSPGHSPGVGHTDPP 96
          APVS   SFSINR+KYVE DAFRPTSPGHSPGVGH +PP
Sbjct: 61 APVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPP 88

[Close]

BLAST of ClCG11G016150 vs. TrEMBL
Match: B9S1S2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0867620 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 1  MAHRSLHLNNLFSLITLILLLHSISLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPV 60
          MA+R+  L  LF++  L+L  H  S  +SRPLH +HP A  S  ++         P  P 
Sbjct: 1  MANRAFLLT-LFAISFLLLHQHLDSAVASRPLH-MHPPAIISQGSLK-------RPLPPS 60

Query: 61 SALSFSINRHKYVEMDAFRPTSPGHSPGVGHTDPP 96
          +AL +SINRHK+ E +AFRPT+PGHS GVGH +PP
Sbjct: 61 TALLYSINRHKFTETEAFRPTAPGHSSGVGHGNPP 86

[Close]

BLAST of ClCG11G016150 vs. TrEMBL
Match: W9S854_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021337 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 10 NLFSL-ITLILLLHSISLTSS-RPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFSI 69
          +L SL + ++LLLHSI  TSS RPLH +HP  +              + P P S   FS+
Sbjct: 8  SLLSLYMAVLLLLHSIGFTSSSRPLHVVHPPVNVLGGPPYK------SKPRPPSTKWFSV 67

Query: 70 NRHKYVEMDAFRPTSPGHSPGVGHTDPP 96
          N +K  E DAFRPT+PGHSPGVGH  PP
Sbjct: 68 NHYKIAETDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of ClCG11G016150 vs. TrEMBL
Match: F6HJ28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00620 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 2  AHRSLHLNNLFSLITLILLLHSISLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPVS 61
          ++  +H+ +LF +I LIL  H   +T+SRPL    P     A   ++          P+S
Sbjct: 3  SYHRIHMLSLF-IIPLILQQHVELITASRPLEVYSPAIPGDASRKLE----------PLS 62

Query: 62 ALSFSINRHKYVEMDAFRPTSPGHSPGVGHTDPP 96
             F INR K VE DA+RPTSPGHSPGVGH  PP
Sbjct: 63 IHEFVINRFKMVETDAYRPTSPGHSPGVGHLAPP 85

[Close]

BLAST of ClCG11G016150 vs. TrEMBL
Match: M5WX34_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021649mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 12 FSLITLILLLHSISLTSSRPLH-DIHPLASASAIAVVDRNRRAITPPAPVSALSFSINRH 71
          F ++ L+L  +S  + +SRPLH   HP     AI +   N+     P P S   F+INR+
Sbjct: 10 FFMVALLLGQNSDLVAASRPLHLHTHP----PAIHIGSLNK-----PIPPSIGRFTINRY 69

Query: 72 KYVEM----DAFRPTSPGHSPGVGHTDPP 96
          K  E     DAFRPTSPGHSPGVGH DPP
Sbjct: 70 KMTESSSGADAFRPTSPGHSPGVGHQDPP 89

[Close]

BLAST of ClCG11G016150 vs. TAIR10
Match: AT1G31670.1 (AT1G31670.1 Copper amine oxidase family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.3e-07
Identity = 35/93 (37.63%), Postives = 45/93 (48.39%), Query Frame = 1


Query: 10  NLFSLITLILLLHSISLTSSR-PLHDIHPLASASAIAVVDRNRRAITPPAPVSALS--FS 69
           + F L  L+L LH  + T++R P+    P +S              +PP+P       F 
Sbjct: 12  SFFMLFLLVLHLHFETTTAARKPVRVFGPPSSIEW-----------SPPSPPKDDFEWFE 71

Query: 70  INRHKYVEMDAFRPTSPGHSPGVGHTDPPVFFS 100
           IN +K +E  AFRPT  G S G+GH DPPVF S
Sbjct: 72  INIYKNIEQTAFRPTGQGPSQGIGHKDPPVFSS 93

[Close]

BLAST of ClCG11G016150 vs. NCBI nr
Match: gi|700198835|gb|KGN53993.1| (hypothetical protein Csa_4G244900 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-25
Identity = 65/99 (65.66%), Postives = 72/99 (72.73%), Query Frame = 1


Query: 1  MAHRSLHLNNLFSLITLILLL---HSISLTSSRPLHDIHPLASASAIAVVDRNRRAITPP 60
          MAHRSLHLN+ F L+ L+LLL   HS+ +TSSRPLH IHP            N  AITPP
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHP-----------HNPHAITPP 60

Query: 61 APVSA-LSFSINRHKYVEMDAFRPTSPGHSPGVGHTDPP 96
          APVS   SFSINR+KYVE DAFRPTSPGHSPGVGH +PP
Sbjct: 61 APVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPP 88

[Close]

BLAST of ClCG11G016150 vs. NCBI nr
Match: gi|703156681|ref|XP_010111512.1| (hypothetical protein L484_021337 [Morus notabilis])

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 10 NLFSL-ITLILLLHSISLTSS-RPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFSI 69
          +L SL + ++LLLHSI  TSS RPLH +HP  +              + P P S   FS+
Sbjct: 8  SLLSLYMAVLLLLHSIGFTSSSRPLHVVHPPVNVLGGPPYK------SKPRPPSTKWFSV 67

Query: 70 NRHKYVEMDAFRPTSPGHSPGVGHTDPP 96
          N +K  E DAFRPT+PGHSPGVGH  PP
Sbjct: 68 NHYKIAETDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of ClCG11G016150 vs. NCBI nr
Match: gi|223540983|gb|EEF42541.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 1  MAHRSLHLNNLFSLITLILLLHSISLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPV 60
          MA+R+  L  LF++  L+L  H  S  +SRPLH +HP A  S  ++         P  P 
Sbjct: 1  MANRAFLLT-LFAISFLLLHQHLDSAVASRPLH-MHPPAIISQGSLK-------RPLPPS 60

Query: 61 SALSFSINRHKYVEMDAFRPTSPGHSPGVGHTDPP 96
          +AL +SINRHK+ E +AFRPT+PGHS GVGH +PP
Sbjct: 61 TALLYSINRHKFTETEAFRPTAPGHSSGVGHGNPP 86

[Close]

BLAST of ClCG11G016150 vs. NCBI nr
Match: gi|595851677|ref|XP_007210161.1| (hypothetical protein PRUPE_ppa021649mg [Prunus persica])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-08
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 12 FSLITLILLLHSISLTSSRPLH-DIHPLASASAIAVVDRNRRAITPPAPVSALSFSINRH 71
          F ++ L+L  +S  + +SRPLH   HP     AI +   N+     P P S   F+INR+
Sbjct: 10 FFMVALLLGQNSDLVAASRPLHLHTHP----PAIHIGSLNK-----PIPPSIGRFTINRY 69

Query: 72 KYVEM----DAFRPTSPGHSPGVGHTDPP 96
          K  E     DAFRPTSPGHSPGVGH DPP
Sbjct: 70 KMTESSSGADAFRPTSPGHSPGVGHQDPP 89

[Close]

BLAST of ClCG11G016150 vs. NCBI nr
Match: gi|566168444|ref|XP_006385147.1| (hypothetical protein POPTR_0004s24290g [Populus trichocarpa])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1


Query: 12 FSLITLILLLHSISLTSSRPLHDIHPLASASAIAVVDRNRRAITPPAPVSALSFSINRHK 71
          F+++ L+L  H     +SRPL DIH  A   +         +  PP  V    + INR+K
Sbjct: 13 FTVVLLLLHQHFDLTAASRPL-DIHSPAIPRS--------GSEPPPTDVHDRWYRINRYK 72

Query: 72 YVEMDAFRPTSPGHSPGVGHTDPP 96
           +E DAFRPT+PGHSPGVGH +PP
Sbjct: 73 NLESDAFRPTTPGHSPGVGHENPP 87

The following BLAST results are available for this feature:

BLAST of ClCG11G016150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0_CUCSA	2.3e-25	65.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G244900 PE=4 SV=1	[more]
B9S1S2_RICCO	4.2e-11	47.37	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0867620 PE=4 SV=1	[more]
W9S854_9ROSA	4.2e-11	48.86	Uncharacterized protein OS=Morus notabilis GN=L484_021337 PE=4 SV=1	[more]
F6HJ28_VITVI	1.3e-09	43.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00620 PE=4 SV=...	[more]
M5WX34_PRUPE	1.5e-08	47.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021649mg PE=4 SV=1	[more]

BLAST of ClCG11G016150 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31670.1	3.3e-07	37.63	Copper amine oxidase family protein	[more]

BLAST of ClCG11G016150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198835\|gb\|KGN53993.1\|	3.3e-25	65.66	hypothetical protein Csa_4G244900 [Cucumis sativus]	[more]
gi\|703156681\|ref\|XP_010111512.1\|	6.0e-11	48.86	hypothetical protein L484_021337 [Morus notabilis]	[more]
gi\|223540983\|gb\|EEF42541.1\|	6.0e-11	47.37	conserved hypothetical protein [Ricinus communis]	[more]
gi\|595851677\|ref\|XP_007210161.1\|	2.1e-08	47.19	hypothetical protein PRUPE_ppa021649mg [Prunus persica]	[more]
gi\|566168444\|ref\|XP_006385147.1\|	1.4e-07	44.05	hypothetical protein POPTR_0004s24290g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0048364	root development

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048364	root development
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
biological_process	GO:0048831	regulation of shoot system development
biological_process	GO:0060359	response to ammonium ion
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005179	hormone activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G016150.1	ClCG11G016150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33348:SF2	SUBFAMILY NOT NAMED	coord: 11..95 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G016150	Csa4G244900	Cucumber (Chinese Long) v2	cuwcgB284
ClCG11G016150	MELO3C010530	Melon (DHL92) v3.5.1	mewcgB462
ClCG11G016150	Cla023204	Watermelon (97103) v1	wcgwmB103
ClCG11G016150	Cla97C11G222100	Watermelon (97103) v2	wcgwmbB064
ClCG11G016150	Bhi09G002290	Wax gourd	wcgwgoB179
ClCG11G016150	CSPI04G12230	Wild cucumber (PI 183967)	cpiwcgB295
ClCG11G016150	CmaCh01G013530	Cucurbita maxima (Rimu)	cmawcgB393
ClCG11G016150	Lsi04G018510	Bottle gourd (USVL1VR-Ls)	lsiwcgB259
ClCG11G016150	Cp4.1LG02g02860	Cucurbita pepo (Zucchini)	cpewcgB488
ClCG11G016150	MELO3C010530.2	Melon (DHL92) v3.6.1	medwcgB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G016150	Cucurbita pepo (Zucchini)	cpewcgB161
ClCG11G016150	Cucurbita pepo (Zucchini)	cpewcgB695
ClCG11G016150	Bottle gourd (USVL1VR-Ls)	lsiwcgB421
ClCG11G016150	Cucumber (Gy14) v2	cgybwcgB263
ClCG11G016150	Silver-seed gourd	carwcgB0647
ClCG11G016150	Silver-seed gourd	carwcgB0799
ClCG11G016150	Silver-seed gourd	carwcgB1018
ClCG11G016150	Cucumber (Chinese Long) v3	cucwcgB294
ClCG11G016150	Watermelon (97103) v2	wcgwmbB085
ClCG11G016150	Watermelon (Charleston Gray)	wcgwcgB080
ClCG11G016150	Cucumber (Gy14) v1	cgywcgB461
ClCG11G016150	Cucurbita maxima (Rimu)	cmawcgB016
ClCG11G016150	Cucurbita maxima (Rimu)	cmawcgB254
ClCG11G016150	Cucurbita moschata (Rifu)	cmowcgB009
ClCG11G016150	Cucurbita moschata (Rifu)	cmowcgB242
ClCG11G016150	Cucurbita moschata (Rifu)	cmowcgB391