Lsi04G007300 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGCGGTAGGAGGAACCGCCGGTGGAGGCGTTGAGTGGCATGTCAGGCCTCCTAACCCTAAAAACCCGATTGTTTTCTTCGACGTCACCATTGGCACTATCCCTGCCGGTCGTATCAAGATGGAGCTATTCGCCGATATTGCTCCAAAAACCGCCGAGAATTTTCGGTATTCTCACTGCTTTGCTTTGCTTCTTCTTCTTTTCGTTCTTTGAATTTTTTTACGATTGCTGCGAAGCGATGCGAATTGTTTACTATTCGAAAAGTTTTTTTTTTTCTTTGGGGGGAGGGGGGTTGAAGTTTTAGCTTTGTTATGGAATATTGAGTTTACGTTAGCTGGAAGTCGGAGCTATTGTCAAAGTCTTCAAATAATTTAATTTACTATGATCATCAACTGATTTAATATGGGATGGGATAAGAATAGGAGTTCTTAGTTCATCTTTGAACTCTTGTAGTGTCATTTTCTCAATTAATATTGATTTCTAGGGCTTCTAAAAATTTGTGTTAAAGTGTTGGAACTTAAATATACCATAATCTGTCAATTTAAACTTTTGGGTCAATCGGTGATTTAAATGTTCTTGTGATTCTCTATTAAATTCCACGCGCTGCTCCATTGAGGATTAGGATTTTTTTTTCTTAGTTAAAAGATGGCTGGAAGTATTATTTTTCTTGGTTGAATTGAATCCCTTTTTCCAATAAGATATGACGAACGGAATCACCTTAGGAAGAAAAATATAAGTAGCTTGAACTTCAAATCTCGTGGAGTGCAACTACCTTTTTCTCTTATCTCTGATTGAAATGTAATATTATTACATGGAGTCTGGAAACTATCATGGGTTGGCCTAGTGGTTAAAAGGGAGACAGTCTCAATAAATGGTTAAATGGTCATGGGTTCAATCAATGGTGGCCATCTACCTAGGAATTAATATTCTACGAGTTTTCTCTCTCTCTAACTATCATATCTCTTCTGCTAAATTTTCTCTGAGTTATTCACCTGTAACTATCTTATCTTTGATTGAAATTTAATATTATTACGTGGAGTCTGGAAACCATCATGGGTTGGCCTCGTGGTTAAAAGGGAGACAGTCTCAATAAATGGTTAAGAGGTCATGGGTTCAATCCATGGTGGCCACCTACCTAAGGATTAATATTCTTTATTTCGTTTATTCTTTATTTCGTTTATTAATAATATGAGCTCATATATTTGGGTAGTAAGAATCTGGATTTTGATTTCACCTACTTCCTTTAAAAACTAAATTTTTTGGCATTATTTTCCCCATCTCTTTCTGTCCCCTAATTCATTACTTTGTCTCTAACAGGCAGTTCTGCACTGGAGAATACAGGCAAGTAAAACTTTAACCAGAATTTAACAAGTATTTCTCTAGTTGACCTATGGTAGAATTTTTATGTAGCTTAAGTGTGAGAAAGTCATTAAATAAATAGATTGGTTTTTTAGTATAATCTTGATAGGAATAATCATCCTAGTGATGTGTAGAACTTCTATTGATCTTTTATTCTCATCTTCTAATGCTGGTAACTGTTTTATAACCATGTATATTTTCTCATTGTCAGCGTAGATTTTAAAATAGTTTAGTAGACTAGTGTCAACTCTCAACCACAGATTTCTGAAGAACATTACGACTTAAATTCTAGTTTCATTCTTAAATTCATAGAATTGAGCTTCTTTTTCCCATTAAAAATCAATCAAGCTGGTGACATGTAAATATTGTCAATATACAAAAGGTGCTTTGGGGTTTTTTTATCCCAAAGAAAAACTTTTCAACTGGTTAAACTTCAAAGTTAAAATAATCAAGAAACCTCAAGTACAAGGTATAGAGTTGAGAGCCGAAAGGGGCTTCGGGTTAGCTTTGAACCCCTTTGTCTACCCTCTAGGACTATTAAAATTACACTTTTTTTTCCCACAAACTTTTTTGAGTCTAATGTCTTTTATAATATATTAATTTATTATTGAAGCGAACGTTAGAAGGTGAAAGGTAGCCTTTAGCCTTAAGGCTTCTCCAATCCAAGTTTTTTTCATGTTTGGTAAACTTATTTCAACGTTTGGTCTCAATTGACAGGAAAGCTGGCTTGCCAGTTGGTTATAAGGGGTGCCAATTCCATAGAGTAATCAAGGATTTCATGATTCAAGCCGGTGACTTTGTGAAGGTAATAATCCAGTCTGTTGGCCTGTTTTTTTGGCACTTTAGGTGCTAATTAAATAGGCATTAATTATTATGTGCTGATGAGAACTCTAAGCAGCGTCTATATCCTCATATTTAGTATTCCATGTCCTCTTTCTGTAAACTGCGATGGGAACAGGAACATAGTCCTTAGAGATTCCCCGTCTTGAAAGGCAAAGTGATCAAATCAACCATTTGCAGTTATGCTTCTCCGGCCTTATTTTACATTGGTGGATGAAACTCTTCCGTTATTAATGATTATTGATACATTACAGCTTCATAATTAATGTTAACCTTCAGGCATAAGAGTTGTATTTGGCTTCCTTTGGTTTTTCTTAGATTCTTTTGGGACTACTGGATTATTTTGTTGTGCTCATTAGTTAGTCTTCAGGCATAAATTAAATTTCTGTTATTTCATTTAGGTTGAACTTTGAAGATTTTCTTTCAATGTTAACATAGTTGCTTCCCGTTTCCTTATGTCATTGTAACATATCAACTTAGTCATCTTCTTTTGTTCTAAGAAAATCCTTGACTTTTCACATTGCTTTGTTGCTTACTTCTCATACTGCCTATCCCCTTATCACATCTATAAGCATTTTATGGTCTCTTTGTTTTGCAGGGTGATGGCAGTGGATGTGTTTCTATTTATGGACATAAGTTTGAGGATGAAAATTTTGTTGCTAAACACACTGGACCTGGTTTATTGTCACTGGTATGCTTTCCTGTTGAAATGAGATTTAGTGCTTCATTTATGTCGGTGTAATTTTGCATATGTTGTTTAACTATATCCTCAGTAATATCTGTTCAATTTAATAAAAGCATGCACGGATGATAATATCTTCAGCTAATGTAGACCTTCTGCCATCATAATAACATTAAGTCTCTAGATAGAAAACTTTTGGCGAGATGGATGGTTTACTCTTCCTCCGTTTTTGCACTCATATATTGACTTAATACGGTGTTTCTTTACGTTGAGTTCTTTGGTGGAAAATTATAGTCTAACTAGTGGGAAAAGGTTTGATGCTATTAGATTAATCAACCACCGTGTTCATTTGTCACAATAATTTATCTGCAATTGCAGCTTTGCTTATATTATAAACTATTGTGTCGGGAATGTTTCATTCTCTAATTCTTATGTAGTGTGATCAACACAACTTTTACTTTTATGAACCACTTGCAATGTGTTATTGATGATTGCCTGCTTCTTCTTCAGGCAAATAGTGGGCCTGGCACAAATGGATGTCAGGTACTCCAATAACTTCCTCTCTCTCTCACATTGTTGTACCCTTCATGAGGACTTTATACATTAACATAACAATTCCACTATTCTTATTAATGTTAATTGGATGGTGTTCCGAGAGACCCCTCCTAGGTTGGCATGGAAATCTAATCTCTCCTTTGATATATCCCTTCCTTTGGAATAATGTTTATTTTCCCAAGAATTTGAACTTTTTTATTACAATATGTTCTCATGATTCTGACCTCTGTGTGTTGTTCAGAGTTATTTACATAAAAGATGAATCAAGCCTTCGCTCCCACATAATTTCTAAGTCTTTCTAATTTCCCTTTTTTATCAGTACCAAATAACAACCACATATGCTTTCTGGCCATTCTGATAAGAGGTCTAATATGGATTTAGAAGTTGGAACAATTATCTGTATTTCAATAATCACAGACGGTGAATAAACTATCTTTGATGTTATAACAATTGTAGTATGATGGGTGGTCTATGTGATTTGTTCTGGCGGGCTATTAACTCTTTTAAAGCTGCATTTACATCATTTGGAATGGTAATGTATTTTGTTCTTACATTGATAACTTTTTGCTACAGTTCTTCATTACTTGTGCCAAATGCGATTGGCTTGACAACAAGCACGTGGTCTTTGGGGTATGCTTCAAGTCCTCCAACTTTTTTGTAGTATATTTTAGTGGCAATATATTTGTCAATAAAAAACATAACACCGTCTGGTTTAAGAGAATCATAGCTTAAATCTTTCCTGGGTTGATCCCTTTGAACGATTCATTGGAGAAAAACATCTCATTAGTCATTATCGTGATTTTGAATTTAACGAGATGTGTCCCTAGAATGGAAGATTTCAAGCATTACCATAAATGCACTATAATATCCCCCTGCGTTGTAACGTACTATGGGAATTTTGTTTTGATTAGGTTTCATTCCCATTGACTGATGGCCAATTACTGTATGCTAATTTATGCTTGGAGGAGTCGAAATTGAGACTTGTGTATTGGTCTCACTTTGATACACCAAATTTCTGTTGATCCTTTTCTTGGAAATCTGTAAATCAAATGATTCCTTGGAATTTCAACTTAGGACGTTTCCATATACATCAAAAGTGAAGAAGCACTATGAACACTAGCCTAGTTTTATAAGTTGATTAATGATCAATGGAACATTACATGCATATTTTGTGCTGGCTTCCATTTTTATGTTTTGATATGCTTGTGTCCCCCATCTTCATTGTTGTTCCTGTCATTCCATTTTCTTTAAACGTATTTAGTCTATTAGATCTCCTGCTTCATTTTGTAGTCCAGGCAGGAATTCTTGAATTGGATTTTTCAATTTTTATTTTACATTCCCTAGGGCAGTAGTCTAAGATGAAATGTAGCTTAATCATCCTTTTATGATATTCTTGCAGAGGGTGCTGGGTGACGGCCTTTTGGTTGTCAGGAAGATTGAAAATGTAGCTACTGGCCCTAATAACCGACCAAAGTTGGCCTGTGTTATTGCTGAATGTGGTGAAATGTAA ATGGCGGCGGTAGGAGGAACCGCCGGTGGAGGCGTTGAGTGGCATGTCAGGCCTCCTAACCCTAAAAACCCGATTGTTTTCTTCGACGTCACCATTGGCACTATCCCTGCCGGTCGTATCAAGATGGAGCTATTCGCCGATATTGCTCCAAAAACCGCCGAGAATTTTCGGAAAGCTGGCTTGCCAGTTGGTTATAAGGGGTGCCAATTCCATAGAGTAATCAAGGATTTCATGATTCAAGCCGGTGACTTTGTGAAGGGTGATGGCAGTGGATGTGTTTCTATTTATGGACATAAGTTTGAGGATGAAAATTTTGTTGCTAAACACACTGGACCTGGTTTATTGTCACTGGCAAATAGTGGGCCTGGCACAAATGGATGTCAGTTCTTCATTACTTGTGCCAAATGCGATTGGCTTGACAACAAGCACGTGGTCTTTGGGAGGGTGCTGGGTGACGGCCTTTTGGTTGTCAGGAAGATTGAAAATGTAGCTACTGGCCCTAATAACCGACCAAAGTTGGCCTGTGTTATTGCTGAATGTGGTGAAATGTAA ATGGCGGCGGTAGGAGGAACCGCCGGTGGAGGCGTTGAGTGGCATGTCAGGCCTCCTAACCCTAAAAACCCGATTGTTTTCTTCGACGTCACCATTGGCACTATCCCTGCCGGTCGTATCAAGATGGAGCTATTCGCCGATATTGCTCCAAAAACCGCCGAGAATTTTCGGAAAGCTGGCTTGCCAGTTGGTTATAAGGGGTGCCAATTCCATAGAGTAATCAAGGATTTCATGATTCAAGCCGGTGACTTTGTGAAGGGTGATGGCAGTGGATGTGTTTCTATTTATGGACATAAGTTTGAGGATGAAAATTTTGTTGCTAAACACACTGGACCTGGTTTATTGTCACTGGCAAATAGTGGGCCTGGCACAAATGGATGTCAGTTCTTCATTACTTGTGCCAAATGCGATTGGCTTGACAACAAGCACGTGGTCTTTGGGAGGGTGCTGGGTGACGGCCTTTTGGTTGTCAGGAAGATTGAAAATGTAGCTACTGGCCCTAATAACCGACCAAAGTTGGCCTGTGTTATTGCTGAATGTGGTGAAATGTAA MAAVGGTAGGGVEWHVRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGHKFEDENFVAKHTGPGLLSLANSGPGTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM
BLAST of Lsi04G007300 vs. Swiss-Prot
Match: CYP22_ARATH (Peptidyl-prolyl cis-trans isomerase CYP22 OS=Arabidopsis thaliana GN=CYP22 PE=2 SV=1) HSP 1 Score: 343.6 bits (880), Expect = 1.3e-93 Identity = 158/190 (83.16%), Postives = 168/190 (88.42%), Query Frame = 1
BLAST of Lsi04G007300 vs. Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 9.7e-68 Identity = 118/172 (68.60%), Postives = 138/172 (80.23%), Query Frame = 1
BLAST of Lsi04G007300 vs. Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 9.7e-68 Identity = 118/172 (68.60%), Postives = 138/172 (80.23%), Query Frame = 1
BLAST of Lsi04G007300 vs. Swiss-Prot
Match: PPIH_RHIO9 (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp7 PE=3 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.5e-65 Identity = 114/171 (66.67%), Postives = 137/171 (80.12%), Query Frame = 1
BLAST of Lsi04G007300 vs. Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 8.5e-64 Identity = 114/172 (66.28%), Postives = 132/172 (76.74%), Query Frame = 1
BLAST of Lsi04G007300 vs. TrEMBL
Match: A0A0A0KTS1_CUCSA (Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_5G624450 PE=3 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 5.9e-104 Identity = 180/191 (94.24%), Postives = 182/191 (95.29%), Query Frame = 1
BLAST of Lsi04G007300 vs. TrEMBL
Match: A0A0D2TB92_GOSRA (Peptidyl-prolyl cis-trans isomerase OS=Gossypium raimondii GN=B456_011G218600 PE=3 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 2.7e-101 Identity = 168/183 (91.80%), Postives = 178/183 (97.27%), Query Frame = 1
BLAST of Lsi04G007300 vs. TrEMBL
Match: A0A0D2VPR5_GOSRA (Peptidyl-prolyl cis-trans isomerase OS=Gossypium raimondii GN=B456_011G218600 PE=3 SV=1) HSP 1 Score: 368.6 bits (945), Expect = 4.3e-99 Identity = 168/191 (87.96%), Postives = 178/191 (93.19%), Query Frame = 1
BLAST of Lsi04G007300 vs. TrEMBL
Match: A0A0B0PHP5_GOSAR (Peptidyl-prolyl cis-trans isomerase OS=Gossypium arboreum GN=F383_03721 PE=3 SV=1) HSP 1 Score: 367.9 bits (943), Expect = 7.4e-99 Identity = 167/191 (87.43%), Postives = 178/191 (93.19%), Query Frame = 1
BLAST of Lsi04G007300 vs. TrEMBL
Match: V4SDK8_9ROSI (Peptidyl-prolyl cis-trans isomerase OS=Citrus clementina GN=CICLE_v10002356mg PE=3 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 1.6e-98 Identity = 169/191 (88.48%), Postives = 175/191 (91.62%), Query Frame = 1
BLAST of Lsi04G007300 vs. TAIR10
Match: AT2G38730.1 (AT2G38730.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein) HSP 1 Score: 343.6 bits (880), Expect = 7.6e-95 Identity = 158/190 (83.16%), Postives = 168/190 (88.42%), Query Frame = 1
BLAST of Lsi04G007300 vs. TAIR10
Match: AT2G21130.1 (AT2G21130.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein) HSP 1 Score: 197.6 bits (501), Expect = 6.7e-51 Identity = 97/171 (56.73%), Postives = 121/171 (70.76%), Query Frame = 1
BLAST of Lsi04G007300 vs. TAIR10
Match: AT3G62030.2 (AT3G62030.2 rotamase CYP 4) HSP 1 Score: 197.2 bits (500), Expect = 8.8e-51 Identity = 94/161 (58.39%), Postives = 114/161 (70.81%), Query Frame = 1
BLAST of Lsi04G007300 vs. TAIR10
Match: AT3G56070.1 (AT3G56070.1 rotamase cyclophilin 2) HSP 1 Score: 197.2 bits (500), Expect = 8.8e-51 Identity = 97/171 (56.73%), Postives = 117/171 (68.42%), Query Frame = 1
BLAST of Lsi04G007300 vs. TAIR10
Match: AT2G16600.1 (AT2G16600.1 rotamase CYP 3) HSP 1 Score: 192.2 bits (487), Expect = 2.8e-49 Identity = 96/171 (56.14%), Postives = 117/171 (68.42%), Query Frame = 1
BLAST of Lsi04G007300 vs. NCBI nr
Match: gi|778706895|ref|XP_011655929.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP22 isoform X1 [Cucumis sativus]) HSP 1 Score: 384.8 bits (987), Expect = 8.4e-104 Identity = 180/191 (94.24%), Postives = 182/191 (95.29%), Query Frame = 1
BLAST of Lsi04G007300 vs. NCBI nr
Match: gi|659092259|ref|XP_008446980.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase H [Cucumis melo]) HSP 1 Score: 384.8 bits (987), Expect = 8.4e-104 Identity = 180/191 (94.24%), Postives = 182/191 (95.29%), Query Frame = 1
BLAST of Lsi04G007300 vs. NCBI nr
Match: gi|763806045|gb|KJB72983.1| (hypothetical protein B456_011G218600 [Gossypium raimondii]) HSP 1 Score: 375.9 bits (964), Expect = 3.9e-101 Identity = 168/183 (91.80%), Postives = 178/183 (97.27%), Query Frame = 1
BLAST of Lsi04G007300 vs. NCBI nr
Match: gi|1009153614|ref|XP_015894728.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP22 [Ziziphus jujuba]) HSP 1 Score: 374.8 bits (961), Expect = 8.7e-101 Identity = 173/191 (90.58%), Postives = 179/191 (93.72%), Query Frame = 1
BLAST of Lsi04G007300 vs. NCBI nr
Match: gi|823249022|ref|XP_012457165.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP22 isoform X1 [Gossypium raimondii]) HSP 1 Score: 368.6 bits (945), Expect = 6.2e-99 Identity = 168/191 (87.96%), Postives = 178/191 (93.19%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |