Lsi04G006940 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G006940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein FAM136A-like protein
Location	chr04 : 6342766 .. 6344911 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTTCTCTGTTTCGGGGAATTTGGAAGGAAGAAGATGAATCACATAGCAGCAATGGAAGAGCAAGTAGTTTCTGAGAGAATGAGGCAAAAGCTTAACGAAGTGAACATGGCTGCGCAATCTCATCTTGGTCCTATTCAAGACCATGTCAATTTTTCCCTTCAGGTTTTCCTTTCTCTCCAATCGAACTTCTGTTTCTCTCTTTGGGATCTCCATTTTCAATCGTTTGTGGTTTCCTTTTGCTTGATATATAGATTTTAAATTAATTTTCATTATTCTTGAGTGCAGCAAGCATATTTCAAATGTGCATATGAGTGTTTCGACAGAAGAAGAAAACAGGAAGAGATTAGTAACTGCGTTGAGAACTGTAGTGTTCCAGTTGTTAAAGCCCAGCAACATGTTGAGAATGAAATGGCTAAGTTTCAAGTACGTGTTATTATCAATCTCCTTCCTTTTTATTTCATGCCTGTTTCCTCCTCCATGTTCTCCCTCGGTACACCATCTAACCGTTTAGTTCTTAAATCGTTAGTCCTTATAAAAATTCACACTTAATTTTGATCAAAATTTTTATAATAGGGACTAAATCAAATTGTAAAGTATAGTTACTAAATTGTTACAAATTTCATAGTATAAGCTTTGTTGCATTGCTGTACGATACACAAGTTGAATCGATTCAAGTTGAAACGAATGGTAGACGATTCAGCTTGCGATTTTGAATCGGAAATAATTAGTAAAAACTTTTTTTTTTTTAAAAAAAAGGCCTGAATTCTTCAATTCTAGCTCAAACTAGCTTTGATTTGGTTTTGAAATTGGATTTGCTGCCACATTACTTTGAAGGTTCATAGTTTTGGCCTTTAGAGGATAACCTAGTCCATGATTATCTTTCAAGGCTTTCATGGAAAAGTTCATCCACAACATTACCTCATCCTGCCGACACATATAATTATCTGCAGAGATGAGCTATATATTTCAGCATTACTCAGTAATGATCTAAAGCTTGAATTCACATCGTATAATTAATTTACACGATATGAGAATTGCATTATGGTGATGACTTGAAGTGTTGGTTTAGAATAACTTTCTAGCTCTTTATGGATACTCTTTTGATTTTAAAACACTCTGATACGACCATACTTGAACAGGATCTGTTCTATAGGAGGTTGTACATATGTGTCCTTGAGTTCTCAGATTTTAAAACACTCTGATTAAATTACAAGTTTGGTCCCTATAGTTTGGAGAAAGTTAGATTTGGTTTCTATGGATTTAAAAGTTTGAATTTTAGTCTCTTCTAGTTTGATAACATCTCATAAATAGTCCATATGATTTGATAGAACCTTTATAAATAGTCTTTGTAGTAGTGATTATTTTTGAGAATTTTATTAAACCATAGTGACTAAATTCTAATTATAAACCATGGAGACTAAATAAACCATAGTGATTATTTATAAATAGTCTTTGTGGTAGTGATTATTTCTGAGAATTTTATTAAACCATAGTGACTAAATTCTAATTATAAACTATGGAGACTAAATTCTAACATTCTCCAAACCATATGGACCAATTTTGCAATTTAACCTAACATTTTATCTAAAGCATTTTTTTAAAAAATAGAAACAACCAATTTCAATGAAAAAGAGCCAAGCATACAAAGAATCCAATTTTCAACTAAGTAAGATGTTACCCAAAGGAAAATTACAAAAAAATCTTTGAGACTGTAGCCCAAAGTAAAACATGGAACCTCACCGGGACCAAATATCACTAGAGTCCCTCTCCATCTCTAAACACTCTATTGGATATTGTTTCTCTCCGTCCAAAGATCCCACAACAAAGCTCACACTTTGATAAACCATAAAAGACAACATTTCTTTTTTAAAGGAAGATGGAGGAGGAACTCTTCTATCGTCTAAGACTACTTACAACATTTGAAAGGATTCATTCTCATGGTCTTGTTGTTATGTGAATGCAGGAAAGATTGAACAGATCACTAATGGTGTGCCAGGACAAGTTCGAAGCAGCCAGGCTTCAGCAGAAAACTGGGAGTGTATATGATTTGGAGTCGTGTGTGGATGCATCAATACAAGAAAGCTTGAATACATTGCCACATTTAGCTAATAAATTAAAAGCTTCCTTCAATATCAGCAATTAA

mRNA sequence

GATTTTCTCTGTTTCGGGGAATTTGGAAGGAAGAAGATGAATCACATAGCAGCAATGGAAGAGCAAGTAGTTTCTGAGAGAATGAGGCAAAAGCTTAACGAAGTGAACATGGCTGCGCAATCTCATCTTGGTCCTATTCAAGACCATGTCAATTTTTCCCTTCAGCAAGCATATTTCAAATGTGCATATGAGTGTTTCGACAGAAGAAGAAAACAGGAAGAGATTAGTAACTGCGTTGAGAACTGTAGTGTTCCAGTTGTTAAAGCCCAGCAACATGTTGAGAATGAAATGGCTAAGTTTCAAGAAAGATTGAACAGATCACTAATGGTGTGCCAGGACAAGTTCGAAGCAGCCAGGCTTCAGCAGAAAACTGGGAGTGTATATGATTTGGAGTCGTGTGTGGATGCATCAATACAAGAAAGCTTGAATACATTGCCACATTTAGCTAATAAATTAAAAGCTTCCTTCAATATCAGCAATTAA

Coding sequence (CDS)

GATTTTCTCTGTTTCGGGGAATTTGGAAGGAAGAAGATGAATCACATAGCAGCAATGGAAGAGCAAGTAGTTTCTGAGAGAATGAGGCAAAAGCTTAACGAAGTGAACATGGCTGCGCAATCTCATCTTGGTCCTATTCAAGACCATGTCAATTTTTCCCTTCAGCAAGCATATTTCAAATGTGCATATGAGTGTTTCGACAGAAGAAGAAAACAGGAAGAGATTAGTAACTGCGTTGAGAACTGTAGTGTTCCAGTTGTTAAAGCCCAGCAACATGTTGAGAATGAAATGGCTAAGTTTCAAGAAAGATTGAACAGATCACTAATGGTGTGCCAGGACAAGTTCGAAGCAGCCAGGCTTCAGCAGAAAACTGGGAGTGTATATGATTTGGAGTCGTGTGTGGATGCATCAATACAAGAAAGCTTGAATACATTGCCACATTTAGCTAATAAATTAAAAGCTTCCTTCAATATCAGCAATTAA

Protein sequence

DFLCFGEFGRKKMNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQEEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLESCVDASIQESLNTLPHLANKLKASFNISN

Homology

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BLAST of Lsi04G006940 vs. Swiss-Prot
Match: F136A_DANRE (Protein FAM136A OS=Danio rerio GN=fam136a PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 1


Query: 47  QDHVNFSLQQAYFKCAYECFDRR-RKQEEISNCVENCSVPVVKAQQHVENEMAKFQERLN 106
           ++H+   +Q   F+C+ EC +       ++  C+E C  P+ KAQ  V +E+ +FQ+RL+
Sbjct: 22  KEHIR-KMQGRMFRCSAECCEHPGNSMNQVHQCIERCHTPLAKAQGLVTSELEQFQDRLS 81

Query: 107 RSLMVCQDK----FEAARLQQKTGSVYDLESCVDASIQESLNTLPHLANKLKASFN 158
           R  M C DK    F++   +    ++ D   CV + + E LN LP +  +LK S N
Sbjct: 82  RCTMHCSDKAKDLFDSGAKEPAVRALMD--GCVGSCVDEHLNLLPSMTRRLKDSLN 134

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BLAST of Lsi04G006940 vs. Swiss-Prot
Match: F136A_XENTR (Protein FAM136A OS=Xenopus tropicalis GN=fam136a PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 1


Query: 54  LQQAYFKCAYECF-DRRRKQEEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQ 113
           +Q   F+C+ +C  D     +++ +C+E C  P+ +AQ  V NE+ +FQ RL R  M C 
Sbjct: 28  MQGKMFRCSAQCCEDNGASMQQVHHCIERCHTPLAQAQSLVTNELERFQNRLARCTMHCN 87

Query: 114 DK----FEAARLQQKTGSVYDLESCVDASIQESLNTLPHLANKLK 154
           DK    F++   + +  +   LE CV    +E +N +P +  KLK
Sbjct: 88  DKAKDSFDSGSKEAQVKA--QLEGCVIKCAEEHMNLIPSMTKKLK 130

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BLAST of Lsi04G006940 vs. Swiss-Prot
Match: F136A_HUMAN (Protein FAM136A OS=Homo sapiens GN=FAM136A PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 1


Query: 35  VNMAAQSHLGPIQDHVNFSLQQAYFKCAYECF-DRRRKQEEISNCVENCSVPVVKAQQHV 94
           V  A +S +  ++      +Q   F+C+  C  D +   +++  C+E C VP+ +AQ  V
Sbjct: 9   VQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALV 68

Query: 95  ENEMAKFQERLNRSLMVCQDKFE------AARLQQKTGSVYDLESCVDASIQESLNTLPH 154
            +E+ KFQ+RL R  M C DK +      +  LQ K      L+SCV   + + ++ +P 
Sbjct: 69  TSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVK----QQLDSCVTKCVDDHMHLIPT 128

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BLAST of Lsi04G006940 vs. Swiss-Prot
Match: F136A_BOVIN (Protein FAM136A OS=Bos taurus GN=FAM136A PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 34/110 (30.91%), Postives = 57/110 (51.82%), Query Frame = 1


Query: 54  LQQAYFKCAYECFDRRR-KQEEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQ 113
           +Q   F+C+  C +  +   +++  C+E C  P+ +AQ  V +E+ KFQ+RL R  M C 
Sbjct: 28  MQGLMFRCSAACCEESQASMQQVHQCIERCHAPLAQAQALVTSELEKFQDRLARCTMYCN 87

Query: 114 DKFEAARLQQKTGS-----VYDLESCVDASIQESLNTLPHLANKLKASFN 158
           DK   A+     GS        LE+CV   + + +N +P +  K+K S +
Sbjct: 88  DK---AKDSIDAGSKELHVKRQLETCVTKCVDDHMNLIPTMTRKMKESLS 134

[Close]

BLAST of Lsi04G006940 vs. Swiss-Prot
Match: F136A_XENLA (Protein FAM136A OS=Xenopus laevis GN=fam136a PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 35/126 (27.78%), Postives = 63/126 (50.00%), Query Frame = 1


Query: 33  NEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECF-DRRRKQEEISNCVENCSVPVVKAQQ 92
           N +  A  S +  ++      +Q   F+C+ +C  D     +++ +C+E C  P+ +AQ 
Sbjct: 7   NRLQNAVDSMVKSLERDNIRKMQGKMFRCSAQCCEDNGASMQQVHHCIERCHTPLAQAQS 66

Query: 93  HVENEMAKFQERLNRSLMVCQDK----FEAARLQQKTGSVYDLESCVDASIQESLNTLPH 152
            V  E+ +FQ RL+R  M C D+    F++   + +  +   LE CV    +E +N +P 
Sbjct: 67  LVTTELERFQNRLSRCTMNCSDQAKDAFDSGSKEAQVKA--QLEGCVIKCAEEHMNLIPS 126

Query: 153 LANKLK 154
           +  KLK
Sbjct: 127 MTKKLK 130

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BLAST of Lsi04G006940 vs. TrEMBL
Match: A0A0A0KV92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589290 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.0e-75
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRR+Q
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRRQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 132
           EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES
Sbjct: 61  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 120

Query: 133 CVDASIQESLNTLPHLANKLKASFNISN 161
           CVDASIQES+NTLPHLANKLKASFNI+N
Sbjct: 121 CVDASIQESMNTLPHLANKLKASFNITN 148

[Close]

BLAST of Lsi04G006940 vs. TrEMBL
Match: A0A061EI59_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_019854 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.3e-59
Identity = 114/147 (77.55%), Postives = 136/147 (92.52%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           M+HIAAME+Q+VSERMR+KLNEVN+AAQ+ L P+QDH+NF+LQQAYFKCAYECFDRRRKQ
Sbjct: 1   MDHIAAMEQQLVSERMRKKLNEVNLAAQAQLAPVQDHINFTLQQAYFKCAYECFDRRRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQ-KTGSVYDLE 132
           EEISNCVE+CSVPVV AQQH ENEMAKFQERLNRSLMVCQDKFE+A+LQQ KT ++ +LE
Sbjct: 61  EEISNCVEHCSVPVVNAQQHFENEMAKFQERLNRSLMVCQDKFESAKLQQIKTEAINELE 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNI 159
           SCV+ SI++++ T+PHL  +LKASFNI
Sbjct: 121 SCVNQSIEDNMKTMPHLVGRLKASFNI 147

[Close]

BLAST of Lsi04G006940 vs. TrEMBL
Match: W9S495_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020387 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.8e-59
Identity = 116/149 (77.85%), Postives = 134/149 (89.93%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           MNHIAA EEQ+VSER+RQKL EVN+AAQ HL PIQDHVNF+LQQAYFKCAYECFDRRRKQ
Sbjct: 1   MNHIAAAEEQIVSERIRQKLQEVNLAAQQHLSPIQDHVNFTLQQAYFKCAYECFDRRRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQ-KTGSVYDLE 132
           EEISNCVE CSVPVV AQQ VENEMAKFQE+LNR+LMVCQDKF++A+LQQ K   + DLE
Sbjct: 61  EEISNCVEYCSVPVVSAQQRVENEMAKFQEKLNRALMVCQDKFDSAKLQQNKNNMLNDLE 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNISN 161
           SCV+ SIQ+S+ TLPHL+ KL+ASF+++N
Sbjct: 121 SCVEHSIQDSIKTLPHLSEKLRASFSVNN 149

[Close]

BLAST of Lsi04G006940 vs. TrEMBL
Match: A0A0B0NB27_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00481 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-57
Identity = 111/149 (74.50%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           M+HIAA+E+Q+VSERMR+KLNEVN+AAQ+ L P+QDH+NF+LQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAVEQQLVSERMRRKLNEVNIAAQAQLAPVQDHINFTLQQAYFKCAYECFDRTRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQ-KTGSVYDLE 132
           EEISNCVE+CSVPVV AQQH ENEMAKFQERLNRSLMVCQDKFE+A+LQQ K  ++ +LE
Sbjct: 61  EEISNCVEHCSVPVVNAQQHFENEMAKFQERLNRSLMVCQDKFESAKLQQNKADAINELE 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNISN 161
           SCV+ SI++++ TLPHL  ++KASFNI +
Sbjct: 121 SCVNQSIEDNMKTLPHLVGRMKASFNIGH 149

[Close]

BLAST of Lsi04G006940 vs. TrEMBL
Match: A0A0D2QFK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232100 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-57
Identity = 111/149 (74.50%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           M+HIAA+E+Q+VSERMR+KLNEVN+AAQ+ L P+QDH+NF+LQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAVEQQLVSERMRRKLNEVNIAAQAQLAPVQDHINFTLQQAYFKCAYECFDRTRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQ-KTGSVYDLE 132
           EEISNCVE+CSVPVV AQQH ENEMAKFQERLNRSLMVCQDKFE+A+LQQ K  ++ +LE
Sbjct: 61  EEISNCVEHCSVPVVNAQQHFENEMAKFQERLNRSLMVCQDKFESAKLQQNKADAINELE 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNISN 161
           SCV+ SI++++ TLPHL  ++KASFNI +
Sbjct: 121 SCVNQSIEDNMKTLPHLVGRMKASFNIGH 149

[Close]

BLAST of Lsi04G006940 vs. TAIR10
Match: AT2G31725.1 (AT2G31725.1 Eukaryotic protein of unknown function (DUF842))

HSP 1 Score: 224.9 bits (572), Expect = 3.4e-59
Identity = 108/149 (72.48%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           M+HIAA EEQ+VSER+R+KL EVN+AAQ+ L PIQDH+NF+LQQAYFKCAYECFDRRRKQ
Sbjct: 1   MDHIAAAEEQIVSERLRRKLEEVNVAAQTQLSPIQDHINFTLQQAYFKCAYECFDRRRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQ-KTGSVYDLE 132
           EEISNCVE+CSVPVVK+QQ+ ENEMA+FQERLNRSL+VCQDKFEA++LQ+ +  +V ++E
Sbjct: 61  EEISNCVEHCSVPVVKSQQYFENEMAQFQERLNRSLVVCQDKFEASKLQKIRPEAVNEME 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNISN 161
           SCV  SI+E+LNTLPH+  ++K +FNI+N
Sbjct: 121 SCVHKSIEENLNTLPHIVQRMKTAFNITN 149

[Close]

BLAST of Lsi04G006940 vs. TAIR10
Match: AT1G05730.1 (AT1G05730.1 Eukaryotic protein of unknown function (DUF842))

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-55
Identity = 102/149 (68.46%), Postives = 128/149 (85.91%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           M+HIAA EEQ+V+ER+R+KL EVN  AQS L PIQDH+NF+LQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAAEEQIVTERIRRKLEEVNATAQSQLSPIQDHINFTLQQAYFKCAYECFDRNRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTG-SVYDLE 132
           EEI+NCVE+CSVPVV AQQH E EM++FQER+NRSLMVCQDKFEAA+L +  G +   +E
Sbjct: 61  EEIANCVEHCSVPVVNAQQHFEGEMSQFQERMNRSLMVCQDKFEAAKLHKNRGDAAKAME 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNISN 161
           SCV+ SI++SL+TLPH+  ++K SF+I++
Sbjct: 121 SCVNTSIEDSLDTLPHIVQRMKTSFSIAD 149

[Close]

BLAST of Lsi04G006940 vs. TAIR10
Match: AT2G43720.1 (AT2G43720.1 Eukaryotic protein of unknown function (DUF842))

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-43
Identity = 84/143 (58.74%), Postives = 115/143 (80.42%), Query Frame = 1


Query: 20  EEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQEEISNCV 79
           EE++V ER+R+K+NEV+ A+QS L P+QDH+NF+LQ+AYFKCAYECFDR R   EIS C 
Sbjct: 6   EEKMVRERIRKKVNEVSSASQSLLSPVQDHINFTLQKAYFKCAYECFDRTRTHAEISRCA 65

Query: 80  ENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGS--VYDLESCVDAS 139
           E+CSVP+  AQ + +NEM+ FQERLNRSL+VCQDKFE A+ QQKT S  V DLE CV+ +
Sbjct: 66  ESCSVPITNAQNYFDNEMSVFQERLNRSLVVCQDKFEVAK-QQKTRSEAVNDLEHCVNQT 125

Query: 140 IQESLNTLPHLANKLKASFNISN 161
           + E++ TLP+L +++K + +I++
Sbjct: 126 VDEAVKTLPNLVSRMKKALSITD 147

[Close]

BLAST of Lsi04G006940 vs. TAIR10
Match: AT1G05740.1 (AT1G05740.1 Eukaryotic protein of unknown function (DUF842))

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-34
Identity = 71/136 (52.21%), Postives = 98/136 (72.06%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSL-----------QQAYFKC 72
           M+ +A  EEQ++ ER+R+K+ EVN + QS L PIQ+H++F+L           QQAYFKC
Sbjct: 1   MDRMAVAEEQILLERVRRKIEEVNASGQSQLSPIQEHISFTLLIYAPLIDDELQQAYFKC 60

Query: 73  AYECFDRRRKQEEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARL- 132
           + ECF++RRK E  +NCVE C VPV K+QQ  +++MAKFQ+R+NRSLMVCQDKFEAA+L 
Sbjct: 61  SNECFEKRRKPEVTTNCVELCRVPVAKSQQQFDSDMAKFQDRMNRSLMVCQDKFEAAKLL 120

Query: 133 -QQKTGSVYDLESCVD 136
              +  +  D+E CV+
Sbjct: 121 NMNRIDAAKDMEGCVN 136

[Close]

BLAST of Lsi04G006940 vs. NCBI nr
Match: gi|449435097|ref|XP_004135332.1| (PREDICTED: protein FAM136A [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRR+Q
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRRQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 132
           EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES
Sbjct: 61  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 120

Query: 133 CVDASIQESLNTLPHLANKLKASFNISN 161
           CVDASIQES+NTLPHLANKLKASFNI+N
Sbjct: 121 CVDASIQESMNTLPHLANKLKASFNITN 148

[Close]

BLAST of Lsi04G006940 vs. NCBI nr
Match: gi|659090454|ref|XP_008446025.1| (PREDICTED: uncharacterized protein ZK637.2 [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-74
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           MNHIAAMEEQVVSERMRQKLNEVN AAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRR+Q
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNAAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRRQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 132
           EEISNCVENCSVPVVKAQQHVENEM+KFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES
Sbjct: 61  EEISNCVENCSVPVVKAQQHVENEMSKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 120

Query: 133 CVDASIQESLNTLPHLANKLKASFNISN 161
           CVDASIQESLNTLPHLANKLKASFNI N
Sbjct: 121 CVDASIQESLNTLPHLANKLKASFNIGN 148

[Close]

BLAST of Lsi04G006940 vs. NCBI nr
Match: gi|590654554|ref|XP_007033729.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 236.5 bits (602), Expect = 3.2e-59
Identity = 114/147 (77.55%), Postives = 136/147 (92.52%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           M+HIAAME+Q+VSERMR+KLNEVN+AAQ+ L P+QDH+NF+LQQAYFKCAYECFDRRRKQ
Sbjct: 1   MDHIAAMEQQLVSERMRKKLNEVNLAAQAQLAPVQDHINFTLQQAYFKCAYECFDRRRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQ-KTGSVYDLE 132
           EEISNCVE+CSVPVV AQQH ENEMAKFQERLNRSLMVCQDKFE+A+LQQ KT ++ +LE
Sbjct: 61  EEISNCVEHCSVPVVNAQQHFENEMAKFQERLNRSLMVCQDKFESAKLQQIKTEAINELE 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNI 159
           SCV+ SI++++ T+PHL  +LKASFNI
Sbjct: 121 SCVNQSIEDNMKTMPHLVGRLKASFNI 147

[Close]

BLAST of Lsi04G006940 vs. NCBI nr
Match: gi|703117416|ref|XP_010101372.1| (hypothetical protein L484_020387 [Morus notabilis])

HSP 1 Score: 235.7 bits (600), Expect = 5.5e-59
Identity = 116/149 (77.85%), Postives = 134/149 (89.93%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           MNHIAA EEQ+VSER+RQKL EVN+AAQ HL PIQDHVNF+LQQAYFKCAYECFDRRRKQ
Sbjct: 1   MNHIAAAEEQIVSERIRQKLQEVNLAAQQHLSPIQDHVNFTLQQAYFKCAYECFDRRRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQ-KTGSVYDLE 132
           EEISNCVE CSVPVV AQQ VENEMAKFQE+LNR+LMVCQDKF++A+LQQ K   + DLE
Sbjct: 61  EEISNCVEYCSVPVVSAQQRVENEMAKFQEKLNRALMVCQDKFDSAKLQQNKNNMLNDLE 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNISN 161
           SCV+ SIQ+S+ TLPHL+ KL+ASF+++N
Sbjct: 121 SCVEHSIQDSIKTLPHLSEKLRASFSVNN 149

[Close]

BLAST of Lsi04G006940 vs. NCBI nr
Match: gi|823178234|ref|XP_012487066.1| (PREDICTED: protein FAM136A-like [Gossypium raimondii])

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-57
Identity = 111/149 (74.50%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 13  MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRKQ 72
           M+HIAA+E+Q+VSERMR+KLNEVN+AAQ+ L P+QDH+NF+LQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAVEQQLVSERMRRKLNEVNIAAQAQLAPVQDHINFTLQQAYFKCAYECFDRTRKQ 60

Query: 73  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQ-KTGSVYDLE 132
           EEISNCVE+CSVPVV AQQH ENEMAKFQERLNRSLMVCQDKFE+A+LQQ K  ++ +LE
Sbjct: 61  EEISNCVEHCSVPVVNAQQHFENEMAKFQERLNRSLMVCQDKFESAKLQQNKADAINELE 120

Query: 133 SCVDASIQESLNTLPHLANKLKASFNISN 161
           SCV+ SI++++ TLPHL  ++KASFNI +
Sbjct: 121 SCVNQSIEDNMKTLPHLVGRMKASFNIGH 149

The following BLAST results are available for this feature:

BLAST of Lsi04G006940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
F136A_DANRE	2.8e-10	31.90	Protein FAM136A OS=Danio rerio GN=fam136a PE=2 SV=1	[more]
F136A_XENTR	4.0e-09	32.38	Protein FAM136A OS=Xenopus tropicalis GN=fam136a PE=2 SV=1	[more]
F136A_HUMAN	1.5e-08	29.37	Protein FAM136A OS=Homo sapiens GN=FAM136A PE=1 SV=1	[more]
F136A_BOVIN	2.0e-08	30.91	Protein FAM136A OS=Bos taurus GN=FAM136A PE=2 SV=1	[more]
F136A_XENLA	2.6e-08	27.78	Protein FAM136A OS=Xenopus laevis GN=fam136a PE=2 SV=1	[more]

BLAST of Lsi04G006940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV92_CUCSA	1.0e-75	97.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589290 PE=4 SV=1	[more]
A0A061EI59_THECC	2.3e-59	77.55	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_019854 PE=4 SV=1	[more]
W9S495_9ROSA	3.8e-59	77.85	Uncharacterized protein OS=Morus notabilis GN=L484_020387 PE=4 SV=1	[more]
A0A0B0NB27_GOSAR	1.2e-57	74.50	Uncharacterized protein OS=Gossypium arboreum GN=F383_00481 PE=4 SV=1	[more]
A0A0D2QFK7_GOSRA	1.2e-57	74.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232100 PE=4 SV=1	[more]

BLAST of Lsi04G006940 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31725.1	3.4e-59	72.48	Eukaryotic protein of unknown function (DUF842)	[more]
AT1G05730.1	1.3e-55	68.46	Eukaryotic protein of unknown function (DUF842)	[more]
AT2G43720.1	3.4e-43	58.74	Eukaryotic protein of unknown function (DUF842)	[more]
AT1G05740.1	1.7e-34	52.21	Eukaryotic protein of unknown function (DUF842)	[more]

BLAST of Lsi04G006940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435097\|ref\|XP_004135332.1\|	1.4e-75	97.97	PREDICTED: protein FAM136A [Cucumis sativus]	[more]
gi\|659090454\|ref\|XP_008446025.1\|	1.2e-74	97.30	PREDICTED: uncharacterized protein ZK637.2 [Cucumis melo]	[more]
gi\|590654554\|ref\|XP_007033729.1\|	3.2e-59	77.55	Uncharacterized protein isoform 2 [Theobroma cacao]	[more]
gi\|703117416\|ref\|XP_010101372.1\|	5.5e-59	77.85	hypothetical protein L484_020387 [Morus notabilis]	[more]
gi\|823178234\|ref\|XP_012487066.1\|	1.8e-57	74.50	PREDICTED: protein FAM136A-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008560	DUF842_euk

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G006940.1	Lsi04G006940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008560	Protein of unknown function DUF842, eukaryotic	PANTHER	PTHR21096	UNCHARACTERIZED	coord: 13..160 score: 1.6
IPR008560	Protein of unknown function DUF842, eukaryotic	PFAM	PF05811	DUF842	coord: 33..154 score: 1.1
None	No IPR available	PANTHER	PTHR21096:SF0	PROTEIN FAM136A	coord: 13..160 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G006940	Csa5G589290	Cucumber (Chinese Long) v2	culsiB368
Lsi04G006940	CSPI05G21310	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G006940	Cucsa.075810	Cucumber (Gy14) v1	cgylsiB076
Lsi04G006940	CmaCh18G006830	Cucurbita maxima (Rimu)	cmalsiB383
Lsi04G006940	CmoCh18G006400	Cucurbita moschata (Rifu)	cmolsiB365
Lsi04G006940	Cla022953	Watermelon (97103) v1	lsiwmB339
Lsi04G006940	MELO3C011855	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G006940	ClCG11G013550	Watermelon (Charleston Gray)	lsiwcgB264
Lsi04G006940	MELO3C011855.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G006940	Cla97C11G219470	Watermelon (97103) v2	lsiwmbB271
Lsi04G006940	Bhi07G001542	Wax gourd	lsiwgoB380
Lsi04G006940	CsGy5G020870	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G006940	Carg21217	Silver-seed gourd	carlsiB629
Lsi04G006940	CsaV3_5G030170	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G006940	Silver-seed gourd	carlsiB122
Lsi04G006940	Cucurbita maxima (Rimu)	cmalsiB172
Lsi04G006940	Cucurbita maxima (Rimu)	cmalsiB670
Lsi04G006940	Cucurbita moschata (Rifu)	cmolsiB160
Lsi04G006940	Cucurbita moschata (Rifu)	cmolsiB661
Lsi04G006940	Cucurbita pepo (Zucchini)	cpelsiB030
Lsi04G006940	Cucurbita pepo (Zucchini)	cpelsiB353
Lsi04G006940	Cucurbita pepo (Zucchini)	cpelsiB672