Lsi04G006430 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G006430
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RING finger protein
Location	chr04 : 5901527 .. 5903519 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATGGACGTTGCTAGTCAAGAACCACCGCCCACTTTCCGATGAAATGAAGTGGCGAGATGAGATCAAACTTAGGTAAGAAGAATCACCACTATGTTTGCAAATCCCTAACCCCTTTCTTTTTTGTTTTAGCAATCAATAGCTTAATGAATTAGTTATCAAATCATCAAATGTTAATCTTCATTATGAACATGCTTAGTTATTGGGTTTTGGGTTTTCTAGCAAAGGAAGGAAAGTCTGACTTGGAAACAATGCAATCCCCAATTGCAGTTGAGAAAGTTAAGAAACAAAAGGTAAGGTAAAGACTTAAGAGAAGCTATCCCTTTCTTGTCTTAAAGTTTCAAAGGTTTGAAGTTTGAAATCAAAGCAAGGTTACCCATCTCCCTCTTTCTCTCATTTTCTTTTCTTTTTGACTATCCCTTATAATTCTCAGATGACAAGACAAAGCCTTTCTACATTTCATTCTTTTTTTGTCTTTCTTTATCATTTCTTCTCTTGTTCTGTCAAATTCAAAGGAAAAAGAATGTGGCCAGAACAACCCAAAAGGAATTCATTTAAAGAATCTCTTAAAGCTGTTGAAGCTGATATAAGACATGCAAATACATTGTAAGTATTACATAAGCTTTAATCCAAGAAATGCAAATACCTGGCCATCTAAGGAGGAAACTTTTGGGGTTCTTCTATTCTCAACATCTAACTCTTCCGAGTGATTTATTTCAATGCTCCTTCAATTTTTGTGTAGCGGGTAGTCCACTGGTAATCTTCATTTGTTGGCAATATTTCCATTCTTTTTCCTAGACTTCTTCATAAGTTTCATCTTTTGGAATCCATAAGCTTTACCACAAACCCTCTTTGTGTTCTAGAATCCAAAAGACTGCCATGGTTCTGAACTTCTGATATACAAATTACAAGCCTTGTTGTTACATTAGTTGAATTACTTGTTGAGTATTGACATTGAAATCTGGGGTTTCTCATGGGGTTTGGTTTTGCATTTGTAGGGCAGCTATGCTCCCGAGAGATTACGGTGGGTTTTGCATTCAAATGAGATTGCATTACAGCCCATTTGCTCCATTTCTTCTTCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTGTTTCCCTCAATTCTTGAGGCATTATTGACAACTTGAATTCCATTTTCCTGAACCCTGCGGAGAGTTTTCTTTCTCCCGCGACTGCTTCCAGCTATTTAAAGAAATCTAAAGTCCCCATCAATGTTTACTCAAGTATGCAGGTGTACGTCGATGGAAAACCGTTGGTGTCGCCAAGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCCGTACTTCTCTCCTAACTTTTGCTTTTCTAGAGACAAACAAATTAGTTTCAAATCATTTACTGTGAAAACCATGGCAGCTGTAATATACCCTTCACTTAGGCAACTTCAAAGTGGGCGTGTTGAGTCAAAAGAAGAGACTTCATCTAGGAAGATAACAGAAGATGAAAAACAACTATCTAATGAAGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAGAACTGCAGAGATGTTGTCTTGCCAAATTGTGGTCATTCGATGTGCCTTAGCTGCTTCCAGGACTGGTAATCTCAATAGCCAGCCATTTTACACCAAATTTTCTTCCTTCTTAACTTCAAAGTTTATGTTGTACATATTTCTTATTATCAGTTAACAACAAGAATTCCCCCTCTGGTAATCTTGTCTTCAGGAGTGCGAGATCACGTTCCTGTCCCTTCTGTCGCAACAGTCTGAACAGGTTGAGCACCAGGGATCTGTGGGTTCTTACAAGCGACACTGAAATCATCGACTCAGAAACTCTTGCCAAGGAAAATCTATTACATTTCTACCTTTATACCGAAAACCTCCCATTGTTTCAACCAGACATGAATATTTTTATTCCAGATTACATGTTG

mRNA sequence

ACGATGGACGTTGCTAGTCAAGAACCACCGCCCACTTTCCGATGAAATGAAGTGGCGAGATGAGATCAAACTTAGTTATTGGGTTTTGGGTTTTCTAGCAAAGGAAGGAAAGTCTGACTTGGAAACAATGCAATCCCCAATTGCAGTTGAGAAAGTTAAGAAACAAAAGATGACAAGACAAAGCCTTTCTACATTTCATTCTTTTTTTGTCTTTCTTTATCATTTCTTCTCTTGTTCTGTCAAATTCAAAGGAAAAAGAATGTGGCCAGAACAACCCAAAAGGAATTCATTTAAAGAATCTCTTAAAGCTGTTGAAGCTGATATAAGACATGCAAATACATTGGCAGCTATGCTCCCGAGAGATTACGGTGGGTTTTGCATTCAAATGAGATTGCATTACAGCCCATTTGCTCCATTTCTTCTTCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGCATTATTGACAACTTGAATTCCATTTTCCTGAACCCTGCGGAGAGTTTTCTTTCTCCCGCGACTGCTTCCAGCTATTTAAAGAAATCTAAAGTCCCCATCAATGTTTACTCAAGTATGCAGGTGTACGTCGATGGAAAACCGTTGGTGTCGCCAAGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCCGTACTTCTCTCCTAACTTTTGCTTTTCTAGAGACAAACAAATTAGTTTCAAATCATTTACTGTGAAAACCATGGCAGCTGTAATATACCCTTCACTTAGGCAACTTCAAAGTGGGCGTGTTGAGTCAAAAGAAGAGACTTCATCTAGGAAGATAACAGAAGATGAAAAACAACTATCTAATGAAGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAGAACTGCAGAGATGTTGTCTTGCCAAATTGTGTTAACAACAAGAATTCCCCCTCTGGTAATCTTGTCTTCAGGAGTGCGAGATCACGTTCCTGTCCCTTCTGTCGCAACAGTCTGAACAGGTTGAGCACCAGGGATCTGTGGGTTCTTACAAGCGACACTGAAATCATCGACTCAGAAACTCTTGCCAAGGAAAATCTATTACATTTCTACCTTTATACCGAAAACCTCCCATTGTTTCAACCAGACATGAATATTTTTATTCCAGATTACATGTTG

Coding sequence (CDS)

ATGAAGTGGCGAGATGAGATCAAACTTAGTTATTGGGTTTTGGGTTTTCTAGCAAAGGAAGGAAAGTCTGACTTGGAAACAATGCAATCCCCAATTGCAGTTGAGAAAGTTAAGAAACAAAAGATGACAAGACAAAGCCTTTCTACATTTCATTCTTTTTTTGTCTTTCTTTATCATTTCTTCTCTTGTTCTGTCAAATTCAAAGGAAAAAGAATGTGGCCAGAACAACCCAAAAGGAATTCATTTAAAGAATCTCTTAAAGCTGTTGAAGCTGATATAAGACATGCAAATACATTGGCAGCTATGCTCCCGAGAGATTACGGTGGGTTTTGCATTCAAATGAGATTGCATTACAGCCCATTTGCTCCATTTCTTCTTCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGCATTATTGACAACTTGAATTCCATTTTCCTGAACCCTGCGGAGAGTTTTCTTTCTCCCGCGACTGCTTCCAGCTATTTAAAGAAATCTAAAGTCCCCATCAATGTTTACTCAAGTATGCAGGTGTACGTCGATGGAAAACCGTTGGTGTCGCCAAGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCCGTACTTCTCTCCTAACTTTTGCTTTTCTAGAGACAAACAAATTAGTTTCAAATCATTTACTGTGAAAACCATGGCAGCTGTAATATACCCTTCACTTAGGCAACTTCAAAGTGGGCGTGTTGAGTCAAAAGAAGAGACTTCATCTAGGAAGATAACAGAAGATGAAAAACAACTATCTAATGAAGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAGAACTGCAGAGATGTTGTCTTGCCAAATTGTGTTAACAACAAGAATTCCCCCTCTGGTAATCTTGTCTTCAGGAGTGCGAGATCACGTTCCTGTCCCTTCTGTCGCAACAGTCTGAACAGGTTGAGCACCAGGGATCTGTGGGTTCTTACAAGCGACACTGAAATCATCGACTCAGAAACTCTTGCCAAGGAAAATCTATTACATTTCTACCTTTATACCGAAAACCTCCCATTGTTTCAACCAGACATGAATATTTTTATTCCAGATTACATGTTG

Protein sequence

MKWRDEIKLSYWVLGFLAKEGKSDLETMQSPIAVEKVKKQKMTRQSLSTFHSFFVFLYHFFSCSVKFKGKRMWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKEETSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFRSARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPDMNIFIPDYML

Homology

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BLAST of Lsi04G006430 vs. TrEMBL
Match: A0A0A0KQ18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591730 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 9.8e-90
Identity = 181/273 (66.30%), Postives = 196/273 (71.79%), Query Frame = 1


Query: 102 MLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFSCTDPLPSIIDNLNSIFLNPAESFLSP 161
           MLPR+YGGFCIQMRLHYSPFAPFLLHWIEWMDF+CTDP+PS +   + +           
Sbjct: 1   MLPREYGGFCIQMRLHYSPFAPFLLHWIEWMDFNCTDPVPSFLGLFHILLY--------- 60

Query: 162 ATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRERKATLKEFYGPYFSPNFCFSRDKQIS 221
                               +VYVDGKPLVSPRERK TLKEFY                 
Sbjct: 61  --------------------KVYVDGKPLVSPRERKTTLKEFY----------------- 120

Query: 222 FKSFTVKTMAAVIYPSLRQLQSGRVESKEETSSRKITEDEKQLSNEDLQRDEECGICMEN 281
                     AVIYPSLRQLQSGRVESKEETSSRKITEDE++LSNEDLQRDEECGICMEN
Sbjct: 121 ----------AVIYPSLRQLQSGRVESKEETSSRKITEDEQKLSNEDLQRDEECGICMEN 180

Query: 282 CRDVVLPNCVNNKNSPSGNLVFR--SARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSE 341
           CRDVVLPNC ++         F+  +ARSRSCPFCRN LNRLSTRDLW+LTSDTEIIDSE
Sbjct: 181 CRDVVLPNCGHSMCLS----CFKDWNARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSE 213

Query: 342 TLAKENLLHFYLYTENLPLFQPDMNIFIPDYML 373
           TLAKENLLHFYLYTE+LPLFQPDMNIFIPDYML
Sbjct: 241 TLAKENLLHFYLYTESLPLFQPDMNIFIPDYML 213

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BLAST of Lsi04G006430 vs. TrEMBL
Match: V4VFV0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.2e-65
Identity = 153/310 (49.35%), Postives = 190/310 (61.29%), Query Frame = 1


Query: 72  MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEW 131
           M  +QP ++S++ESLKA+EADI+HANTLAA LPRDYGG  +QMRL YSPFAP +L  IEW
Sbjct: 1   MLVKQPNKSSYRESLKALEADIQHANTLAAALPRDYGGDFVQMRLSYSPFAPLVLFMIEW 60

Query: 132 MDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLV 191
           MD+SCTD +PS +  LN                          I VY   +VYVDG P +
Sbjct: 61  MDYSCTDTVPSYLGLLN--------------------------ILVY---KVYVDGMPAL 120

Query: 192 SPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKE- 251
           S +ERKATL+EFY                           A+IYPSLRQL+S   E ++ 
Sbjct: 121 SSKERKATLREFY---------------------------AIIYPSLRQLESEFSELEDN 180

Query: 252 -------ETSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVF 311
                  E SSRK  E+ ++LS++DL R++ECGICMENC  +VLPNC    +S   N   
Sbjct: 181 SKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNC---GHSLCVNCFH 240

Query: 312 R-SARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPD 371
             +ARS+SCPFCR SL R+S+ DLWVL SD +IID  T+AKENL  FYLY ENLPL  PD
Sbjct: 241 DWNARSQSCPFCRGSLQRVSSADLWVLISDIDIIDMVTIAKENLRRFYLYIENLPLIVPD 251

Query: 372 MNIFIPDYML 373
            + F+ DYML
Sbjct: 301 THPFVYDYML 251

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BLAST of Lsi04G006430 vs. TrEMBL
Match: A0A0B0NDR7_GOSAR (RING finger protein OS=Gossypium arboreum GN=F383_19099 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 8.6e-62
Identity = 143/309 (46.28%), Postives = 184/309 (59.55%), Query Frame = 1


Query: 72  MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEW 131
           M   Q  ++SF+ESLKA+EADI+HAN+LAA LPRDYGG C QMRL YSPFAPF+L  IEW
Sbjct: 1   MLQNQANKSSFRESLKALEADIQHANSLAAALPRDYGGNCYQMRLSYSPFAPFILFLIEW 60

Query: 132 MDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLV 191
           MD+SCTD LPS +  L+                          I VY   + YVDG P++
Sbjct: 61  MDYSCTDTLPSYLGLLH--------------------------ILVY---KAYVDGMPVL 120

Query: 192 SPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKE- 251
           S +++KATL+EFY                           AVIYP LRQL    +ES++ 
Sbjct: 121 SSKDKKATLREFY---------------------------AVIYPLLRQLGDEFIESEDN 180

Query: 252 ------ETSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFR 311
                 E SSRK  ED K++ ++D +RD+ECGICMENC  +VLPNC    ++   N    
Sbjct: 181 KKGRCMEVSSRKKLEDHKRIPDKDSERDDECGICMENCTKMVLPNC---GHALCINCFHE 240

Query: 312 -SARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPDM 371
            + RS+SCPFCR SL R+S++DLWVLTS  ++ID  TLAKENL   Y+Y E LPL  P+ 
Sbjct: 241 WNRRSQSCPFCRGSLKRVSSKDLWVLTSCNDVIDMVTLAKENLCRLYIYIEKLPLVMPET 250

Query: 372 NIFIPDYML 373
             ++ DYM+
Sbjct: 301 QPYVSDYMI 250

[Close]

BLAST of Lsi04G006430 vs. TrEMBL
Match: A0A061EEU1_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010696 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 143/314 (45.54%), Postives = 179/314 (57.01%), Query Frame = 1


Query: 72  MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEW 131
           M  +QP ++SFKESLKA+EADI+HAN+LAA LPRDYGG C QMRL YSPFAPF+L  IEW
Sbjct: 1   MLQKQPNKSSFKESLKALEADIQHANSLAAALPRDYGGNCYQMRLSYSPFAPFILFLIEW 60

Query: 132 MDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLV 191
           MD+SCT+ LPS +   + +                               + YVDG P +
Sbjct: 61  MDYSCTNSLPSYLGLFHILV-----------------------------FKAYVDGIPAL 120

Query: 192 SPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQ-------LQSG 251
           S +ERKAT +EFY                           AVIYP LRQ       L+  
Sbjct: 121 SSKERKATQREFY---------------------------AVIYPLLRQLGDEFIKLEDN 180

Query: 252 RVESKEETSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFR 311
           +     E  SRK  ED K++SN+DL+RD+ECGICMENC  +VLPNC        G+ +  
Sbjct: 181 KKNGCTEVLSRKRVEDRKRVSNKDLERDDECGICMENCTKMVLPNC--------GHALCI 240

Query: 312 S------ARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPL 371
           S       RS+SCPFCR SL R+S++DLWVLTS  +IID  TLAKENL   YLY E LP 
Sbjct: 241 SCFHDWNVRSQSCPFCRGSLKRVSSKDLWVLTSGNDIIDMVTLAKENLRRLYLYMEKLPF 250

Query: 372 FQPDMNIFIPDYML 373
             P+ + ++ DYM+
Sbjct: 301 VMPETHHYVSDYMI 250

[Close]

BLAST of Lsi04G006430 vs. TrEMBL
Match: A0A0D2W0B2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G174000 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.3e-61
Identity = 143/308 (46.43%), Postives = 182/308 (59.09%), Query Frame = 1


Query: 72  MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEW 131
           M   Q  ++SF+ESLKA+EADI+HAN+LAA LPRDYGG C QMRL YSPFAPF+L  IEW
Sbjct: 1   MLQNQANKSSFRESLKALEADIQHANSLAAALPRDYGGSCYQMRLSYSPFAPFILFLIEW 60

Query: 132 MDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLV 191
           MD+SCTD LPS +  L+                          I VY   + YVDG P +
Sbjct: 61  MDYSCTDTLPSYLGLLH--------------------------ILVY---KAYVDGMPAL 120

Query: 192 SPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKE- 251
           S +++KATLKEFY                           AVIYP LRQL    +ES++ 
Sbjct: 121 SSKDKKATLKEFY---------------------------AVIYPLLRQLGDEFIESEDN 180

Query: 252 ------ETSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFR 311
                 E SSRK  ED K++ ++D +RD+ECGICMENC  +VLP+C +       +   R
Sbjct: 181 KKGRCTEVSSRKKLEDHKRIPDKDSERDDECGICMENCTKMVLPDCGHALCVDCFHEWNR 240

Query: 312 SARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPDMN 371
             RS+SCPFCR SL R+S++DLWVLTS  ++ID  TLAKENL   Y+Y E LPL  P+  
Sbjct: 241 --RSQSCPFCRGSLKRVSSKDLWVLTSCNDVIDMVTLAKENLWRLYIYIEKLPLVMPETQ 250

Query: 372 IFIPDYML 373
            ++ DYM+
Sbjct: 301 PYVSDYMI 250

[Close]

BLAST of Lsi04G006430 vs. TAIR10
Match: AT1G13195.1 (AT1G13195.1 RING/U-box superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 5.6e-36
Identity = 92/288 (31.94%), Postives = 151/288 (52.43%), Query Frame = 1


Query: 80  NSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFSCTDP 139
           +S+ ESLK +EAD++HAN+LA  +P       +QM+L +S FA  LL  + W+D S +  
Sbjct: 14  SSYYESLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCL 73

Query: 140 LPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRERKAT 199
           +P  + NL  + +   +S                            DG+P ++   RKAT
Sbjct: 74  IPRYL-NLFHVLVYKVQS----------------------------DGQPKLTTHGRKAT 133

Query: 200 LKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKEETSSRKITE 259
           + EFYG                     +     +++ +L +L++  +    +  S+KIT+
Sbjct: 134 ISEFYG--------------------VILPSLQLLHSNLDELETTDIGFDLKRLSKKITK 193

Query: 260 DEK--QLSNEDLQRDEECGICMENCRDVVLPNCVNN---KNSPSGNLVFRSARSRSCPFC 319
           + +  + SN  L+R+EECGIC+E C  +VLPNC ++   K   + NL     +S+SCPFC
Sbjct: 194 EARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNL-----KSQSCPFC 247

Query: 320 RNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPD 363
           R S+ R+++ DLWVL  D +++D+ T ++E+L  FYLY  +LP   P+
Sbjct: 254 RGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPE 247

[Close]

BLAST of Lsi04G006430 vs. TAIR10
Match: AT1G24440.1 (AT1G24440.1 RING/U-box superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 5.6e-36
Identity = 101/299 (33.78%), Postives = 148/299 (49.50%), Query Frame = 1


Query: 76  QPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFS 135
           Q  ++S+++SLK +EADI HAN LAA +P    G  +QM+L  S  APF +  ++WMDFS
Sbjct: 4   QLTKSSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFS 63

Query: 136 CTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRE 195
           C   LP   D  +                          I +Y   +V  DG+   S   
Sbjct: 64  CL--LPRYFDFFH--------------------------ILIY---KVRADGRWNRSRYG 123

Query: 196 RKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKEE---- 255
           RKAT++EFYG                           VI PSL +L     +  +E    
Sbjct: 124 RKATIREFYG---------------------------VILPSLERLHINFADLPDESLWY 183

Query: 256 ------TSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFR- 315
                 T  +   E  + +++ DL+R++ECGIC+E C  +VLPNC +          +R 
Sbjct: 184 PNPKAITKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIK----CYRN 240

Query: 316 -SARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPD 363
            + +S SCPFCR S+ R+++ DLWVLT D +++D ET+ KE+LL FYL+  +LP   P+
Sbjct: 244 WNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPE 240

[Close]

BLAST of Lsi04G006430 vs. TAIR10
Match: AT5G58787.1 (AT5G58787.1 RING/U-box superfamily protein)

HSP 1 Score: 148.7 bits (374), Expect = 7.3e-36
Identity = 102/289 (35.29%), Postives = 137/289 (47.40%), Query Frame = 1


Query: 81  SFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFSCTDPL 140
           SFK+SLKA+EADI+HANTLA   PR+  G  +QMRL YSP A F L  ++W D       
Sbjct: 5   SFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCKLA--- 64

Query: 141 PSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRERKATL 200
                            FL       Y+               Y DGK  +S  ERKA++
Sbjct: 65  ----------------GFLGLLRVLIYM--------------TYADGKTTMSVYERKASI 124

Query: 201 KEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVE-----SKEETSSR 260
           +EF                            AVI PSL QLQ G  +      KE    R
Sbjct: 125 REF---------------------------QAVILPSLSQLQRGVTDIDDSKQKEVCKMR 184

Query: 261 KITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFRS--ARSRSCPF 320
              +DE ++S  +++R+EECGICME    VVLPNC ++         +R    RS+SCPF
Sbjct: 185 YRKKDESEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIK----CYRDWRGRSQSCPF 229

Query: 321 CRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPD 363
           CR+SL R+ + DLW+     + ++   +A+EN    ++Y E LPL  PD
Sbjct: 245 CRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPD 229

[Close]

BLAST of Lsi04G006430 vs. TAIR10
Match: AT5G01520.1 (AT5G01520.1 RING/U-box superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-35
Identity = 103/297 (34.68%), Postives = 140/297 (47.14%), Query Frame = 1


Query: 79  RNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFSCTD 138
           R SFK+SLKA+EADI+ ANTLA+  P +Y G  +QMRL YSP A   L  ++W D     
Sbjct: 2   RKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAG 61

Query: 139 PLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRERKA 198
            L                                + I +Y +   YVDGK  +S  ERK 
Sbjct: 62  AL------------------------------GLLRILIYKA---YVDGKTTMSLHERKT 121

Query: 199 TLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKEETSS---- 258
           +++EFY                            V++PSL QL  G  + +E        
Sbjct: 122 SIREFYD---------------------------VLFPSLLQLHGGITDVEERKQKEICD 181

Query: 259 ----RKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFRS--ARS 318
               +K   D+ ++S  DL+R+EECGIC+E    VVLP C    N       +R+  ARS
Sbjct: 182 KRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTC----NHSMCINCYRNWRARS 234

Query: 319 RSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPDMNI 366
           +SCPFCR SL R+++ DLW+ T   EI D   + KENL    +Y + LPL   D N+
Sbjct: 242 QSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNL 234

[Close]

BLAST of Lsi04G006430 vs. TAIR10
Match: AT3G47160.2 (AT3G47160.2 RING/U-box superfamily protein)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-32
Identity = 102/304 (33.55%), Postives = 143/304 (47.04%), Query Frame = 1


Query: 81  SFKESLKAVEADIRHANTL------------AAMLPRDYGGFCIQMRLHYSPFAPFLLHW 140
           SFK+SLKA+EADI+HANT+            A   PR+  G  +QMRL Y+P A FLL  
Sbjct: 5   SFKDSLKALEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQFLLFL 64

Query: 141 IEWMDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGK 200
           ++W D      L                                + + +Y +   Y DGK
Sbjct: 65  VQWTDCHLAGTL------------------------------GLLRVLIYMT---YADGK 124

Query: 201 PLVSPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVE- 260
             +S  ERK ++K+FY                           AVI+PSL QL+ G  + 
Sbjct: 125 TTMSVYERKTSIKDFY---------------------------AVIFPSLLQLERGITDL 184

Query: 261 ----SKEETSSRKITEDEKQ---LSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGN 320
                KE    R   +DE +   LS  D++R+EECGICME    VVLPNC ++       
Sbjct: 185 DDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCIK--- 244

Query: 321 LVFRS--ARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPL 363
             +R    RS SCPFCR+SL R+++ DLW+L   ++ ++  T+ +EN    ++Y E LPL
Sbjct: 245 -CYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPL 244

[Close]

BLAST of Lsi04G006430 vs. NCBI nr
Match: gi|659090608|ref|XP_008446105.1| (PREDICTED: uncharacterized protein LOC103488931 isoform X1 [Cucumis melo])

HSP 1 Score: 450.7 bits (1158), Expect = 2.5e-123
Identity = 229/301 (76.08%), Postives = 245/301 (81.40%), Query Frame = 1


Query: 72  MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEW 131
           MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPR+YGGFCIQMRLHYSPFAPFLLHWIEW
Sbjct: 1   MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPREYGGFCIQMRLHYSPFAPFLLHWIEW 60

Query: 132 MDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLV 191
           MDF+CTDP+PS +   + +                               +VYVDGKPLV
Sbjct: 61  MDFNCTDPVPSFLGLFHILLY-----------------------------KVYVDGKPLV 120

Query: 192 SPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKEE 251
           SPRERKATLKEFYGPYFSPNF FSR +QI  K FT++TMAAVIYPSLRQLQSGRV+SKEE
Sbjct: 121 SPRERKATLKEFYGPYFSPNFFFSRIEQIGSKLFTIETMAAVIYPSLRQLQSGRVDSKEE 180

Query: 252 TSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFRSARSRSC 311
           TS RKITEDE++LSNEDLQRDEECGICMENCRDVVLPNC    +         SARSRSC
Sbjct: 181 TSPRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNC--GHSMCLNCFKDWSARSRSC 240

Query: 312 PFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPDMNIFIPDYM 371
           PFCRN LNRLSTRDLW+LTSDTEIIDSETLAKENLLHFYLYTE+LPLFQPDMNIFIPDYM
Sbjct: 241 PFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPDYM 270

Query: 372 L 373
           L
Sbjct: 301 L 270

[Close]

BLAST of Lsi04G006430 vs. NCBI nr
Match: gi|659090610|ref|XP_008446106.1| (PREDICTED: peroxisome biogenesis factor 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 1.9e-107
Identity = 213/301 (70.76%), Postives = 224/301 (74.42%), Query Frame = 1


Query: 72  MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEW 131
           MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPR+YGGFCIQMRLHYSPFAPFLLHWIEW
Sbjct: 1   MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPREYGGFCIQMRLHYSPFAPFLLHWIEW 60

Query: 132 MDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLV 191
           MDF+CTDP+PS +  L  I L                             +VYVDGKPLV
Sbjct: 61  MDFNCTDPVPSFL-GLFHILL----------------------------YKVYVDGKPLV 120

Query: 192 SPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKEE 251
           SPRERKATLKEFY                           AVIYPSLRQLQSGRV+SKEE
Sbjct: 121 SPRERKATLKEFY---------------------------AVIYPSLRQLQSGRVDSKEE 180

Query: 252 TSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFRSARSRSC 311
           TS RKITEDE++LSNEDLQRDEECGICMENCRDVVLPNC    +         SARSRSC
Sbjct: 181 TSPRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNC--GHSMCLNCFKDWSARSRSC 240

Query: 312 PFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPDMNIFIPDYM 371
           PFCRN LNRLSTRDLW+LTSDTEIIDSETLAKENLLHFYLYTE+LPLFQPDMNIFIPDYM
Sbjct: 241 PFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPDYM 243

Query: 372 L 373
           L
Sbjct: 301 L 243

[Close]

BLAST of Lsi04G006430 vs. NCBI nr
Match: gi|449435031|ref|XP_004135299.1| (PREDICTED: peroxisome biogenesis factor 10-like isoform X1 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 2.5e-107
Identity = 213/303 (70.30%), Postives = 227/303 (74.92%), Query Frame = 1


Query: 72  MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEW 131
           MWPEQP+RNSFKESLKAVEADIRHANTLAAMLPR+YGGFCIQMRLHYSPFAPFLLHWIEW
Sbjct: 1   MWPEQPERNSFKESLKAVEADIRHANTLAAMLPREYGGFCIQMRLHYSPFAPFLLHWIEW 60

Query: 132 MDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLV 191
           MDF+CTDP+PS +  L  I L                             +VYVDGKPLV
Sbjct: 61  MDFNCTDPVPSFL-GLFHILL----------------------------YKVYVDGKPLV 120

Query: 192 SPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKEE 251
           SPRERK TLKEFY                           AVIYPSLRQLQSGRVESKEE
Sbjct: 121 SPRERKTTLKEFY---------------------------AVIYPSLRQLQSGRVESKEE 180

Query: 252 TSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFR--SARSR 311
           TSSRKITEDE++LSNEDLQRDEECGICMENCRDVVLPNC ++         F+  +ARSR
Sbjct: 181 TSSRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNCGHSMCLS----CFKDWNARSR 240

Query: 312 SCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPDMNIFIPD 371
           SCPFCRN LNRLSTRDLW+LTSDTEIIDSETLAKENLLHFYLYTE+LPLFQPDMNIFIPD
Sbjct: 241 SCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPD 243

Query: 372 YML 373
           YML
Sbjct: 301 YML 243

[Close]

BLAST of Lsi04G006430 vs. NCBI nr
Match: gi|659090612|ref|XP_008446107.1| (PREDICTED: uncharacterized protein LOC103488931 isoform X3 [Cucumis melo])

HSP 1 Score: 390.2 bits (1001), Expect = 4.1e-105
Identity = 199/271 (73.43%), Postives = 215/271 (79.34%), Query Frame = 1


Query: 102 MLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFSCTDPLPSIIDNLNSIFLNPAESFLSP 161
           MLPR+YGGFCIQMRLHYSPFAPFLLHWIEWMDF+CTDP+PS +   + +           
Sbjct: 1   MLPREYGGFCIQMRLHYSPFAPFLLHWIEWMDFNCTDPVPSFLGLFHILLY--------- 60

Query: 162 ATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRERKATLKEFYGPYFSPNFCFSRDKQIS 221
                               +VYVDGKPLVSPRERKATLKEFYGPYFSPNF FSR +QI 
Sbjct: 61  --------------------KVYVDGKPLVSPRERKATLKEFYGPYFSPNFFFSRIEQIG 120

Query: 222 FKSFTVKTMAAVIYPSLRQLQSGRVESKEETSSRKITEDEKQLSNEDLQRDEECGICMEN 281
            K FT++TMAAVIYPSLRQLQSGRV+SKEETS RKITEDE++LSNEDLQRDEECGICMEN
Sbjct: 121 SKLFTIETMAAVIYPSLRQLQSGRVDSKEETSPRKITEDEQKLSNEDLQRDEECGICMEN 180

Query: 282 CRDVVLPNCVNNKNSPSGNLVFRSARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETL 341
           CRDVVLPNC    +         SARSRSCPFCRN LNRLSTRDLW+LTSDTEIIDSETL
Sbjct: 181 CRDVVLPNC--GHSMCLNCFKDWSARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSETL 240

Query: 342 AKENLLHFYLYTENLPLFQPDMNIFIPDYML 373
           AKENLLHFYLYTE+LPLFQPDMNIFIPDYML
Sbjct: 241 AKENLLHFYLYTESLPLFQPDMNIFIPDYML 240

[Close]

BLAST of Lsi04G006430 vs. NCBI nr
Match: gi|778704758|ref|XP_011655587.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X2 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 1.4e-89
Identity = 181/273 (66.30%), Postives = 196/273 (71.79%), Query Frame = 1


Query: 102 MLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFSCTDPLPSIIDNLNSIFLNPAESFLSP 161
           MLPR+YGGFCIQMRLHYSPFAPFLLHWIEWMDF+CTDP+PS +   + +           
Sbjct: 1   MLPREYGGFCIQMRLHYSPFAPFLLHWIEWMDFNCTDPVPSFLGLFHILLY--------- 60

Query: 162 ATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRERKATLKEFYGPYFSPNFCFSRDKQIS 221
                               +VYVDGKPLVSPRERK TLKEFY                 
Sbjct: 61  --------------------KVYVDGKPLVSPRERKTTLKEFY----------------- 120

Query: 222 FKSFTVKTMAAVIYPSLRQLQSGRVESKEETSSRKITEDEKQLSNEDLQRDEECGICMEN 281
                     AVIYPSLRQLQSGRVESKEETSSRKITEDE++LSNEDLQRDEECGICMEN
Sbjct: 121 ----------AVIYPSLRQLQSGRVESKEETSSRKITEDEQKLSNEDLQRDEECGICMEN 180

Query: 282 CRDVVLPNCVNNKNSPSGNLVFR--SARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSE 341
           CRDVVLPNC ++         F+  +ARSRSCPFCRN LNRLSTRDLW+LTSDTEIIDSE
Sbjct: 181 CRDVVLPNCGHSMCLS----CFKDWNARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSE 213

Query: 342 TLAKENLLHFYLYTENLPLFQPDMNIFIPDYML 373
           TLAKENLLHFYLYTE+LPLFQPDMNIFIPDYML
Sbjct: 241 TLAKENLLHFYLYTESLPLFQPDMNIFIPDYML 213

The following BLAST results are available for this feature:

BLAST of Lsi04G006430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G006430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ18_CUCSA	9.8e-90	66.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591730 PE=4 SV=1	[more]
V4VFV0_9ROSI	2.2e-65	49.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1	[more]
A0A0B0NDR7_GOSAR	8.6e-62	46.28	RING finger protein OS=Gossypium arboreum GN=F383_19099 PE=4 SV=1	[more]
A0A061EEU1_THECC	1.1e-61	45.54	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010696 PE=4 SV=1	[more]
A0A0D2W0B2_GOSRA	3.3e-61	46.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G174000 PE=4 SV=1	[more]

BLAST of Lsi04G006430 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13195.1	5.6e-36	31.94	RING/U-box superfamily protein	[more]
AT1G24440.1	5.6e-36	33.78	RING/U-box superfamily protein	[more]
AT5G58787.1	7.3e-36	35.29	RING/U-box superfamily protein	[more]
AT5G01520.1	2.1e-35	34.68	RING/U-box superfamily protein	[more]
AT3G47160.2	1.7e-32	33.55	RING/U-box superfamily protein	[more]

BLAST of Lsi04G006430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090608\|ref\|XP_008446105.1\|	2.5e-123	76.08	PREDICTED: uncharacterized protein LOC103488931 isoform X1 [Cucumis melo]	[more]
gi\|659090610\|ref\|XP_008446106.1\|	1.9e-107	70.76	PREDICTED: peroxisome biogenesis factor 10-like isoform X2 [Cucumis melo]	[more]
gi\|449435031\|ref\|XP_004135299.1\|	2.5e-107	70.30	PREDICTED: peroxisome biogenesis factor 10-like isoform X1 [Cucumis sativus]	[more]
gi\|659090612\|ref\|XP_008446107.1\|	4.1e-105	73.43	PREDICTED: uncharacterized protein LOC103488931 isoform X3 [Cucumis melo]	[more]
gi\|778704758\|ref\|XP_011655587.1\|	1.4e-89	66.30	PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G006430.1	Lsi04G006430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 259..324 score: 8.
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 173..204 score: 1.7E-68coord: 108..143 score: 1.7E-68coord: 232..372 score: 1.7
None	No IPR available	PANTHER	PTHR15315:SF22	SUBFAMILY NOT NAMED	coord: 173..204 score: 1.7E-68coord: 108..143 score: 1.7E-68coord: 232..372 score: 1.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 269..320 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G006430	Csa5G591730	Cucumber (Chinese Long) v2	culsiB368
Lsi04G006430	CSPI05G21750	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G006430	Cucsa.075380	Cucumber (Gy14) v1	cgylsiB076
Lsi04G006430	CmaCh04G018060	Cucurbita maxima (Rimu)	cmalsiB670
Lsi04G006430	Cla009997	Watermelon (97103) v1	lsiwmB312
Lsi04G006430	ClCG05G026220	Watermelon (Charleston Gray)	lsiwcgB283
Lsi04G006430	Cla97C05G108430	Watermelon (97103) v2	lsiwmbB284
Lsi04G006430	Bhi07G001494	Wax gourd	lsiwgoB380
Lsi04G006430	Cp4.1LG01g15820	Cucurbita pepo (Zucchini)	cpelsiB353
Lsi04G006430	CsaV3_5G030620	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G006430	Cucurbita moschata (Rifu)	cmolsiB368
Lsi04G006430	Cucurbita moschata (Rifu)	cmolsiB661
Lsi04G006430	Cucurbita moschata (Rifu)	cmolsiB716
Lsi04G006430	Cucurbita pepo (Zucchini)	cpelsiB030
Lsi04G006430	Cucurbita pepo (Zucchini)	cpelsiB091
Lsi04G006430	Cucurbita pepo (Zucchini)	cpelsiB672
Lsi04G006430	Wild cucumber (PI 183967)	cpilsiB116
Lsi04G006430	Cucumber (Chinese Long) v2	culsiB119
Lsi04G006430	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G006430	Melon (DHL92) v3.5.1	lsimeB289
Lsi04G006430	Melon (DHL92) v3.5.1	lsimeB303
Lsi04G006430	Watermelon (Charleston Gray)	lsiwcgB308
Lsi04G006430	Watermelon (97103) v1	lsiwmB296
Lsi04G006430	Cucumber (Gy14) v2	cgyblsiB105
Lsi04G006430	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G006430	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G006430	Melon (DHL92) v3.6.1	lsimedB317
Lsi04G006430	Silver-seed gourd	carlsiB218
Lsi04G006430	Silver-seed gourd	carlsiB453
Lsi04G006430	Silver-seed gourd	carlsiB567
Lsi04G006430	Silver-seed gourd	carlsiB629
Lsi04G006430	Cucumber (Chinese Long) v3	cuclsiB131
Lsi04G006430	Watermelon (97103) v2	lsiwmbB305
Lsi04G006430	Wax gourd	lsiwgoB367
Lsi04G006430	Bottle gourd (USVL1VR-Ls)	lsilsiB149
Lsi04G006430	Cucumber (Gy14) v1	cgylsiB636
Lsi04G006430	Cucurbita maxima (Rimu)	cmalsiB172
Lsi04G006430	Cucurbita maxima (Rimu)	cmalsiB383
Lsi04G006430	Cucurbita maxima (Rimu)	cmalsiB726
Lsi04G006430	Cucurbita moschata (Rifu)	cmolsiB160