Lsi04G004610 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G004610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Pentatricopeptide repeat-containing family protein
Location	chr04 : 4392187 .. 4392677 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAATGTTTTGGTAAAAAAATTATATATTTCACGAATATATTATAATTAATCTCCTAAATATATAAAAAAAAGATTAAGTAAACTGGTTGCAATGTTTTGGAGGTCAATGGAGAAGTTCACGAATTCTTTGTAGGAGACAAGTCTCACCCGCGTTATGACGCCATCGAAACGATATGGGGAGAGATTTCTAAACGGCTAAAGTTAGTAGGATACGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAAAGGAAGATGCTTTGTGTAAACATAGCGAGAAGATGGCCATTGCATTTGGATTGATTAGTCTGAAGGAGGGGTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTTACAAAGATGATATCTAAAATTTTTAACAGGGAGATTATTGTGAGAGATAGGAACAGATTTCACCATTTTAAAGATGGCGAGTGTTCTTGTAAGGATTTTTGGTGA

mRNA sequence

ATGTGCAATGTCAATGGAGAAGTTCACGAATTCTTTGTAGGAGACAAGTCTCACCCGCGTTATGACGCCATCGAAACGATATGGGGAGAGATTTCTAAACGGCTAAAGTTAGTAGGATACGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAAAGGAAGATGCTTTGTGTAAACATAGCGAGAAGATGGCCATTGCATTTGGATTGATTAGTCTGAAGGAGGGGTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTTACAAAGATGATATCTAAAATTTTTAACAGGGAGATTATTGTGAGAGATAGGAACAGATTTCACCATTTTAAAGATGGCGAGTGTTCTTGTAAGGATTTTTGGTGA

Coding sequence (CDS)

ATGTGCAATGTCAATGGAGAAGTTCACGAATTCTTTGTAGGAGACAAGTCTCACCCGCGTTATGACGCCATCGAAACGATATGGGGAGAGATTTCTAAACGGCTAAAGTTAGTAGGATACGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAAAGGAAGATGCTTTGTGTAAACATAGCGAGAAGATGGCCATTGCATTTGGATTGATTAGTCTGAAGGAGGGGTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTTACAAAGATGATATCTAAAATTTTTAACAGGGAGATTATTGTGAGAGATAGGAACAGATTTCACCATTTTAAAGATGGCGAGTGTTCTTGTAAGGATTTTTGGTGA

Protein sequence

MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDGECSCKDFW

Homology

[Close]

BLAST of Lsi04G004610 vs. Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.9e-56
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP+Y  I+ +W +IS+RL+L GY A+T PV+FDI EEEKEDALC H
Sbjct: 485 VNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLH 544

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK AIAFG++SLKE +PIRIVKNLRVC DCH V+ MISKIFNREIIVRDRNRFHHFKDG
Sbjct: 545 SEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 604

Query: 124 ECSCKDFW 131
            CSC  FW
Sbjct: 605 HCSCNGFW 612

[Close]

BLAST of Lsi04G004610 vs. Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.1e-40
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEE-EKEDALCKH 63
           +  +VHEF  GD+ H +   I T+  +IS+R+K  GYV NTN VL D+EE EKE +L  H
Sbjct: 505 IENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVH 564

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SE++AIA+GLIS K G P++I KNLRVC DCH VTK+ISKI  R+I++RDRNRFHHF DG
Sbjct: 565 SERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDG 624

Query: 124 ECSCKDFW 131
            CSC DFW
Sbjct: 625 SCSCGDFW 632

[Close]

BLAST of Lsi04G004610 vs. Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.9e-39
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           V G VHEF VGD+S    + I  +  EI +RL+  GYV +T  VL D+ E++KE AL  H
Sbjct: 446 VEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYH 505

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAF L+  + G P+RI+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF+DG
Sbjct: 506 SEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDG 565

Query: 124 ECSCKDFW 131
            CSC+DFW
Sbjct: 566 SCSCRDFW 573

[Close]

BLAST of Lsi04G004610 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-39
Identity = 75/128 (58.59%), Postives = 93/128 (72.66%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           V G +  F VGDKSHPRY+ IE     I  RLK  G+VAN +  L D+ +EE E+ LC H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK+ +REI+VRD NRFHHFKDG
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686

Query: 124 ECSCKDFW 131
            CSC D+W
Sbjct: 687 VCSCGDYW 694

[Close]

BLAST of Lsi04G004610 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 6.7e-39
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 1


Query: 1   MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEEE-KEDAL 60
           +  V   VHEF +GDKSHP+ DAI     E++ RL+  GYV   + V  D+EEE KE+A+
Sbjct: 465 LVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAV 524

Query: 61  CKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHF 120
             HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K++SK++NREI+VRDR+RFHHF
Sbjct: 525 VYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHF 584

Query: 121 KDGECSCKDFW 131
           K+G CSC+D+W
Sbjct: 585 KNGSCSCQDYW 595

[Close]

BLAST of Lsi04G004610 vs. TrEMBL
Match: A0A0A0KSJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604190 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.2e-64
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           VNGEVHEFF GDKSHP YD IET+WGEISKRLKL GYVA+TN VLFDIE EEKEDALCKH
Sbjct: 408 VNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 467

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGL SLKEGLPIRIVKNLR+CWDCHDV+KMISKIF REIIVRDRNRFHHFKDG
Sbjct: 468 SEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDG 527

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 528 ECSCKDFW 535

[Close]

BLAST of Lsi04G004610 vs. TrEMBL
Match: M5XCT1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-61
Identity = 112/128 (87.50%), Postives = 121/128 (94.53%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           V+GEVHEF VGDKSHPRY+ IE + GEIS+RLKL GYVANTNPVLFDIE EEKEDALCKH
Sbjct: 474 VDGEVHEFLVGDKSHPRYNEIEAMLGEISRRLKLAGYVANTNPVLFDIEEEEKEDALCKH 533

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK+FNREIIVRDRNRFHHF+DG
Sbjct: 534 SEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKLFNREIIVRDRNRFHHFQDG 593

Query: 124 ECSCKDFW 131
           ECSCK +W
Sbjct: 594 ECSCKGYW 601

[Close]

BLAST of Lsi04G004610 vs. TrEMBL
Match: V4SVA4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030908mg PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.8e-60
Identity = 107/128 (83.59%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           V+GEVHEFF GD++HPRY+ IE + GEIS+RLKL GYVANTNPV++DIE EEKED LCKH
Sbjct: 534 VDGEVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKH 593

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK+FNREIIVRD+NRFHHFKDG
Sbjct: 594 SEKIAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDKNRFHHFKDG 653

Query: 124 ECSCKDFW 131
           ECSCK +W
Sbjct: 654 ECSCKGYW 661

[Close]

BLAST of Lsi04G004610 vs. TrEMBL
Match: A0A067H5C2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012539mg PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-58
Identity = 105/128 (82.03%), Postives = 119/128 (92.97%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           V+ EVHEFF GD++HPRY+ IE + GEIS+RLKL GYVANTNPV++DIE EEKED LCKH
Sbjct: 334 VDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPVMYDIEEEEKEDTLCKH 393

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK+FNREIIVRDRNRFHHFK+G
Sbjct: 394 SEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNREIIVRDRNRFHHFKEG 453

Query: 124 ECSCKDFW 131
           +CSCK +W
Sbjct: 454 KCSCKGYW 461

[Close]

BLAST of Lsi04G004610 vs. TrEMBL
Match: W9R9L3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021080 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.4e-58
Identity = 105/128 (82.03%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           V+GEVHEFFVGDKSHPRYD IE   G+IS RLK  GY ANTNPVLFDIE EEKEDALCKH
Sbjct: 488 VDGEVHEFFVGDKSHPRYDEIEVKLGDISMRLKSFGYTANTNPVLFDIEEEEKEDALCKH 547

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAFGLISL+EG+PIRIVKNLRVCWDCH+VTK+ISK++NR+I+VRDRNRFHHF+DG
Sbjct: 548 SEKVAIAFGLISLREGVPIRIVKNLRVCWDCHEVTKLISKLYNRKIVVRDRNRFHHFQDG 607

Query: 124 ECSCKDFW 131
           ECSCK +W
Sbjct: 608 ECSCKGYW 615

[Close]

BLAST of Lsi04G004610 vs. TAIR10
Match: AT5G40405.1 (AT5G40405.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 217.6 bits (553), Expect = 4.4e-57
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP+Y  I+ +W +IS+RL+L GY A+T PV+FDI EEEKEDALC H
Sbjct: 485 VNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLH 544

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK AIAFG++SLKE +PIRIVKNLRVC DCH V+ MISKIFNREIIVRDRNRFHHFKDG
Sbjct: 545 SEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 604

Query: 124 ECSCKDFW 131
            CSC  FW
Sbjct: 605 HCSCNGFW 612

[Close]

BLAST of Lsi04G004610 vs. TAIR10
Match: AT4G37380.1 (AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 164.9 bits (416), Expect = 3.4e-41
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEE-EKEDALCKH 63
           +  +VHEF  GD+ H +   I T+  +IS+R+K  GYV NTN VL D+EE EKE +L  H
Sbjct: 505 IENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVH 564

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SE++AIA+GLIS K G P++I KNLRVC DCH VTK+ISKI  R+I++RDRNRFHHF DG
Sbjct: 565 SERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDG 624

Query: 124 ECSCKDFW 131
            CSC DFW
Sbjct: 625 SCSCGDFW 632

[Close]

BLAST of Lsi04G004610 vs. TAIR10
Match: AT3G62890.1 (AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 162.2 bits (409), Expect = 2.2e-40
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           V G VHEF VGD+S    + I  +  EI +RL+  GYV +T  VL D+ E++KE AL  H
Sbjct: 446 VEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYH 505

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAF L+  + G P+RI+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF+DG
Sbjct: 506 SEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDG 565

Query: 124 ECSCKDFW 131
            CSC+DFW
Sbjct: 566 SCSCRDFW 573

[Close]

BLAST of Lsi04G004610 vs. TAIR10
Match: AT3G12770.1 (AT3G12770.1 mitochondrial editing factor 22)

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-40
Identity = 75/128 (58.59%), Postives = 93/128 (72.66%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           V G +  F VGDKSHPRY+ IE     I  RLK  G+VAN +  L D+ +EE E+ LC H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK+ +REI+VRD NRFHHFKDG
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686

Query: 124 ECSCKDFW 131
            CSC D+W
Sbjct: 687 VCSCGDYW 694

[Close]

BLAST of Lsi04G004610 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 161.4 bits (407), Expect = 3.8e-40
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 1


Query: 1   MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEEE-KEDAL 60
           +  V   VHEF +GDKSHP+ DAI     E++ RL+  GYV   + V  D+EEE KE+A+
Sbjct: 465 LVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAV 524

Query: 61  CKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHF 120
             HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K++SK++NREI+VRDR+RFHHF
Sbjct: 525 VYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHF 584

Query: 121 KDGECSCKDFW 131
           K+G CSC+D+W
Sbjct: 585 KNGSCSCQDYW 595

[Close]

BLAST of Lsi04G004610 vs. NCBI nr
Match: gi|659090971|ref|XP_008446300.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 6.4e-66
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDIE EEKEDALCKH
Sbjct: 487 VNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 546

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIF REIIVRDRNRFHHFKDG
Sbjct: 547 SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFEREIIVRDRNRFHHFKDG 606

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 607 ECSCKDFW 614

[Close]

BLAST of Lsi04G004610 vs. NCBI nr
Match: gi|449435364|ref|XP_004135465.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           VNGEVHEFF GDKSHP YD IET+WGEISKRLKL GYVA+TN VLFDIE EEKEDALCKH
Sbjct: 487 VNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 546

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGL SLKEGLPIRIVKNLR+CWDCHDV+KMISKIF REIIVRDRNRFHHFKDG
Sbjct: 547 SEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDG 606

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 607 ECSCKDFW 614

[Close]

BLAST of Lsi04G004610 vs. NCBI nr
Match: gi|700196697|gb|KGN51874.1| (hypothetical protein Csa_5G604190 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           VNGEVHEFF GDKSHP YD IET+WGEISKRLKL GYVA+TN VLFDIE EEKEDALCKH
Sbjct: 408 VNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 467

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGL SLKEGLPIRIVKNLR+CWDCHDV+KMISKIF REIIVRDRNRFHHFKDG
Sbjct: 468 SEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDG 527

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 528 ECSCKDFW 535

[Close]

BLAST of Lsi04G004610 vs. NCBI nr
Match: gi|657994461|ref|XP_008389535.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica])

HSP 1 Score: 246.1 bits (627), Expect = 3.3e-62
Identity = 113/128 (88.28%), Postives = 122/128 (95.31%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           V+GEVHEF VGDKSHPRY+ IET+ GEIS+RLKL GYVANTNPVLFDIE EEKEDALCKH
Sbjct: 488 VDGEVHEFLVGDKSHPRYNEIETMLGEISRRLKLAGYVANTNPVLFDIEEEEKEDALCKH 547

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK+FNREI+VRDRNRFHHFKDG
Sbjct: 548 SEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKLFNREIVVRDRNRFHHFKDG 607

Query: 124 ECSCKDFW 131
           ECSCK +W
Sbjct: 608 ECSCKGYW 615

[Close]

BLAST of Lsi04G004610 vs. NCBI nr
Match: gi|694361392|ref|XP_009360403.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Pyrus x bretschneideri])

HSP 1 Score: 246.1 bits (627), Expect = 3.3e-62
Identity = 113/128 (88.28%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIE-EEKEDALCKH 63
           V+GEVHEF VGDKSHPRY+ IET+ GEIS+RLKLVGYVANTNPVLFDIE EEKEDALCKH
Sbjct: 488 VDGEVHEFLVGDKSHPRYNEIETMLGEISQRLKLVGYVANTNPVLFDIEEEEKEDALCKH 547

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAFGLISL+EG+PIRIVKNLRVCWDCHDVTKMISK+FNREI+VRDRNRFHHFKDG
Sbjct: 548 SEKVAIAFGLISLREGVPIRIVKNLRVCWDCHDVTKMISKLFNREIVVRDRNRFHHFKDG 607

Query: 124 ECSCKDFW 131
           ECSCK +W
Sbjct: 608 ECSCKGYW 615

The following BLAST results are available for this feature:

BLAST of Lsi04G004610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP410_ARATH	7.9e-56	77.34	Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th...	[more]
PP354_ARATH	6.1e-40	60.16	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]
PP295_ARATH	3.9e-39	58.59	Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN...	[more]
PP224_ARATH	5.1e-39	58.59	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN...	[more]
PP330_ARATH	6.7e-39	57.25	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN...	[more]

BLAST of Lsi04G004610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSJ7_CUCSA	7.2e-64	90.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604190 PE=4 SV=1	[more]
M5XCT1_PRUPE	2.0e-61	87.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1	[more]
V4SVA4_9ROSI	4.8e-60	83.59	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030908mg PE=4 SV=1	[more]
A0A067H5C2_CITSI	1.5e-58	82.03	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012539mg PE=4 SV=1	[more]
W9R9L3_9ROSA	3.4e-58	82.03	Uncharacterized protein OS=Morus notabilis GN=L484_021080 PE=4 SV=1	[more]

BLAST of Lsi04G004610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40405.1	4.4e-57	77.34	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G37380.1	3.4e-41	60.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G62890.1	2.2e-40	58.59	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G12770.1	2.9e-40	58.59	mitochondrial editing factor 22	[more]
AT4G21065.1	3.8e-40	57.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Lsi04G004610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090971\|ref\|XP_008446300.1\|	6.4e-66	94.53	PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum...	[more]
gi\|449435364\|ref\|XP_004135465.1\|	1.0e-63	90.63	PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum...	[more]
gi\|700196697\|gb\|KGN51874.1\|	1.0e-63	90.63	hypothetical protein Csa_5G604190 [Cucumis sativus]	[more]
gi\|657994461\|ref\|XP_008389535.1\|	3.3e-62	88.28	PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus...	[more]
gi\|694361392\|ref\|XP_009360403.1\|	3.3e-62	88.28	PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Pyrus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G004610.1	Lsi04G004610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
No results

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G004610	Cla010155	Watermelon (97103) v1	lsiwmB312
Lsi04G004610	Cla97C05G106710	Watermelon (97103) v2	lsiwmbB284
Lsi04G004610	Carg17243	Silver-seed gourd	carlsiB091

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G004610	Wild cucumber (PI 183967)	cpilsiB050
Lsi04G004610	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G004610	Cucumber (Chinese Long) v2	culsiB051
Lsi04G004610	Cucumber (Chinese Long) v2	culsiB368
Lsi04G004610	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G004610	Melon (DHL92) v3.5.1	lsimeB289
Lsi04G004610	Watermelon (Charleston Gray)	lsiwcgB274
Lsi04G004610	Watermelon (Charleston Gray)	lsiwcgB283
Lsi04G004610	Watermelon (Charleston Gray)	lsiwcgB304
Lsi04G004610	Watermelon (97103) v1	lsiwmB323
Lsi04G004610	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G004610	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G004610	Melon (DHL92) v3.6.1	lsimedB303
Lsi04G004610	Melon (DHL92) v3.6.1	lsimedB308
Lsi04G004610	Silver-seed gourd	carlsiB764
Lsi04G004610	Cucumber (Chinese Long) v3	cuclsiB061
Lsi04G004610	Cucumber (Chinese Long) v3	cuclsiB057
Lsi04G004610	Cucumber (Chinese Long) v3	cuclsiB393
Lsi04G004610	Watermelon (97103) v2	lsiwmbB261
Lsi04G004610	Wax gourd	lsiwgoB377
Lsi04G004610	Wax gourd	lsiwgoB380
Lsi04G004610	Wax gourd	lsiwgoB408
Lsi04G004610	Bottle gourd (USVL1VR-Ls)	lsilsiB097
Lsi04G004610	Bottle gourd (USVL1VR-Ls)	lsilsiB139
Lsi04G004610	Cucumber (Gy14) v1	cgylsiB119
Lsi04G004610	Cucumber (Gy14) v1	cgylsiB465
Lsi04G004610	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G004610	Cucurbita maxima (Rimu)	cmalsiB678
Lsi04G004610	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G004610	Cucurbita moschata (Rifu)	cmolsiB671
Lsi04G004610	Cucurbita pepo (Zucchini)	cpelsiB032
Lsi04G004610	Cucurbita pepo (Zucchini)	cpelsiB360