Cla010155 (gene) Watermelon (97103) v1

Overview
NameCla010155
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPentatricopeptide repeat-containing protein (AHRD V1 ***- D7MAN3_ARALL)
LocationChr5 : 31659449 .. 31659883 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCAGAAGGCATAAGCAAGCTCCCTGGTTGCAGTGTTATGGAGGTCAATGGAGAAGTTCATGAATTCTTTGTAGGTGACAAGTCCCACCCGAGTTACGATGCCATCGAAACGATGTGGGGAGAGATTTCTAAACGGTTGAAGTTAGCAGGATATGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAGAAAAGGAAGATGCTCTGTGTAAACATAGTGAGAAGATGGCCATTGCATTTGGGTTGATTAGTCTGAAGGAGGGTTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTGACAAAGATGATATCTAAAACTTTTAACAGGGAGATTGTTGTGAGAGATAGGAACAGGTTTCACCATTTTAAAGATGGTGAGTGTTCTTGTAAGGATTTTTGGTGA

mRNA sequence

ATGAAAGCAGAAGGCATAAGCAAGCTCCCTGGTTGCAGTGTTATGGAGGTCAATGGAGAAGTTCATGAATTCTTTGTAGGTGACAAGTCCCACCCGAGTTACGATGCCATCGAAACGATGTGGGGAGAGATTTCTAAACGGTTGAAGTTAGCAGGATATGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAGAAAAGGAAGATGCTCTGTGTAAACATAGTGAGAAGATGGCCATTGCATTTGGGTTGATTAGTCTGAAGGAGGGTTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTGACAAAGATGATATCTAAAACTTTTAACAGGGAGATTGTTGTGAGAGATAGGAACAGGTTTCACCATTTTAAAGATGGTGAGTGTTCTTGTAAGGATTTTTGGTGA

Coding sequence (CDS)

ATGAAAGCAGAAGGCATAAGCAAGCTCCCTGGTTGCAGTGTTATGGAGGTCAATGGAGAAGTTCATGAATTCTTTGTAGGTGACAAGTCCCACCCGAGTTACGATGCCATCGAAACGATGTGGGGAGAGATTTCTAAACGGTTGAAGTTAGCAGGATATGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAGAAAAGGAAGATGCTCTGTGTAAACATAGTGAGAAGATGGCCATTGCATTTGGGTTGATTAGTCTGAAGGAGGGTTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTGACAAAGATGATATCTAAAACTTTTAACAGGGAGATTGTTGTGAGAGATAGGAACAGGTTTCACCATTTTAAAGATGGTGAGTGTTCTTGTAAGGATTTTTGGTGA

Protein sequence

MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPVLFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNREIVVRDRNRFHHFKDGECSCKDFW
Homology
[Close]
BLAST of Cla010155 vs. Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-62
Identity = 109/144 (75.69%), Postives = 123/144 (85.42%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MK++G+ K PGCSVMEVNGEVHEFFVGDKSHP Y  I+ +W +IS+RL+LAGY A+T PV
Sbjct: 469 MKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPV 528

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           +FDI+EEEKEDALC HSEK AIAFG++SLKE +PIRIVKNLRVC DCH V+ MISK FNR
Sbjct: 529 MFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNR 588

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRDRNRFHHFKDG CSC  FW
Sbjct: 589 EIIVRDRNRFHHFKDGHCSCNGFW 612

[Close]
BLAST of Cla010155 vs. Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.8e-46
Identity = 87/144 (60.42%), Postives = 107/144 (74.31%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           M+ +GI+K+PGCS +EV G VHEF VGD+S    + I  M  EI +RL+ AGYV +T  V
Sbjct: 430 MEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 489

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           L D+ E++KE AL  HSEK+AIAF L+  + G P+RI+KNLR+C DCH V KMISK F+R
Sbjct: 490 LLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSR 549

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EIVVRD NRFHHF+DG CSC+DFW
Sbjct: 550 EIVVRDCNRFHHFRDGSCSCRDFW 573

[Close]
BLAST of Cla010155 vs. Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-44
Identity = 87/144 (60.42%), Postives = 103/144 (71.53%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MK +GI K PG S +E+  +VHEF  GD+ H     I TM  +IS+R+K  GYV NTN V
Sbjct: 489 MKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTV 548

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           L D+EE EKE +L  HSE++AIA+GLIS K G P++I KNLRVC DCH VTK+ISK   R
Sbjct: 549 LQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGR 608

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           +IV+RDRNRFHHF DG CSC DFW
Sbjct: 609 KIVMRDRNRFHHFTDGSCSCGDFW 632

[Close]
BLAST of Cla010155 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-43
Identity = 84/144 (58.33%), Postives = 104/144 (72.22%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           M  +G+ K+PG S++EV   VHEF +GDKSHP  DAI     E++ RL+  GYV   + V
Sbjct: 452 MLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNV 511

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
             D+EEEEKE+A+  HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K++SK +NR
Sbjct: 512 YVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNR 571

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EIVVRDR+RFHHFK+G CSC+D+W
Sbjct: 572 EIVVRDRSRFHHFKNGSCSCQDYW 595

[Close]
BLAST of Cla010155 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-43
Identity = 83/144 (57.64%), Postives = 101/144 (70.14%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MK +G++K  GCS +EV G +  F VGDKSHP Y+ IE     I  RLK  G+VAN +  
Sbjct: 551 MKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDAS 610

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           L D+ +EE E+ LC HSE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK  +R
Sbjct: 611 LHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDR 670

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EIVVRD NRFHHFKDG CSC D+W
Sbjct: 671 EIVVRDTNRFHHFKDGVCSCGDYW 694

[Close]
BLAST of Cla010155 vs. TrEMBL
Match: A0A0A0KSJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604190 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.3e-74
Identity = 134/144 (93.06%), Postives = 138/144 (95.83%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKAEGISKLPGCSVMEVNGEVHEFF GDKSHPSYD IETMWGEISKRLKLAGYVA+TN V
Sbjct: 392 MKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSV 451

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           LFDIEEEEKEDALCKHSEKMAIAFGL SLKEGLPIRIVKNLR+CWDCHDV+KMISK F R
Sbjct: 452 LFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFER 511

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRDRNRFHHFKDGECSCKDFW
Sbjct: 512 EIIVRDRNRFHHFKDGECSCKDFW 535

[Close]
BLAST of Cla010155 vs. TrEMBL
Match: M5XCT1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-69
Identity = 125/144 (86.81%), Postives = 136/144 (94.44%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKA+G+ KLPGCSV+EV+GEVHEF VGDKSHP Y+ IE M GEIS+RLKLAGYVANTNPV
Sbjct: 458 MKAKGVRKLPGCSVLEVDGEVHEFLVGDKSHPRYNEIEAMLGEISRRLKLAGYVANTNPV 517

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           LFDIEEEEKEDALCKHSEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK FNR
Sbjct: 518 LFDIEEEEKEDALCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKLFNR 577

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRDRNRFHHF+DGECSCK +W
Sbjct: 578 EIIVRDRNRFHHFQDGECSCKGYW 601

[Close]
BLAST of Cla010155 vs. TrEMBL
Match: V4SVA4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030908mg PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-68
Identity = 120/144 (83.33%), Postives = 135/144 (93.75%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKA+G+ KLPGCSV+EV+GEVHEFF GD++HP Y+ IE M GEIS+RLKLAGYVANTNPV
Sbjct: 518 MKAKGVKKLPGCSVIEVDGEVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 577

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           ++DIEEEEKED LCKHSEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK FNR
Sbjct: 578 MYDIEEEEKEDTLCKHSEKIAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 637

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRD+NRFHHFKDGECSCK +W
Sbjct: 638 EIIVRDKNRFHHFKDGECSCKGYW 661

[Close]
BLAST of Cla010155 vs. TrEMBL
Match: A0A067H5C2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012539mg PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.0e-66
Identity = 118/144 (81.94%), Postives = 134/144 (93.06%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKA+G+ KLPGCSV+EV+ EVHEFF GD++HP Y+ IE M GEIS+RLKLAGYVANTNPV
Sbjct: 318 MKAKGVKKLPGCSVIEVDREVHEFFAGDETHPRYNEIEVMLGEISRRLKLAGYVANTNPV 377

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           ++DIEEEEKED LCKHSEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK FNR
Sbjct: 378 MYDIEEEEKEDTLCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKVFNR 437

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRDRNRFHHFK+G+CSCK +W
Sbjct: 438 EIIVRDRNRFHHFKEGKCSCKGYW 461

[Close]
BLAST of Cla010155 vs. TrEMBL
Match: W9R9L3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021080 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-65
Identity = 118/144 (81.94%), Postives = 132/144 (91.67%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKA+G+ KLPGCSV+EV+GEVHEFFVGDKSHP YD IE   G+IS RLK  GY ANTNPV
Sbjct: 472 MKAKGVRKLPGCSVIEVDGEVHEFFVGDKSHPRYDEIEVKLGDISMRLKSFGYTANTNPV 531

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           LFDIEEEEKEDALCKHSEK+AIAFGLISL+EG+PIRIVKNLRVCWDCH+VTK+ISK +NR
Sbjct: 532 LFDIEEEEKEDALCKHSEKVAIAFGLISLREGVPIRIVKNLRVCWDCHEVTKLISKLYNR 591

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           +IVVRDRNRFHHF+DGECSCK +W
Sbjct: 592 KIVVRDRNRFHHFQDGECSCKGYW 615

[Close]
BLAST of Cla010155 vs. NCBI nr
Match: gi|659090971|ref|XP_008446300.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 7.6e-76
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKA GISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVA+TN V
Sbjct: 471 MKAGGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVASTNSV 530

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISK F R
Sbjct: 531 LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFER 590

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRDRNRFHHFKDGECSCKDFW
Sbjct: 591 EIIVRDRNRFHHFKDGECSCKDFW 614

[Close]
BLAST of Cla010155 vs. NCBI nr
Match: gi|449435364|ref|XP_004135465.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 1.9e-74
Identity = 134/144 (93.06%), Postives = 138/144 (95.83%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKAEGISKLPGCSVMEVNGEVHEFF GDKSHPSYD IETMWGEISKRLKLAGYVA+TN V
Sbjct: 471 MKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSV 530

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           LFDIEEEEKEDALCKHSEKMAIAFGL SLKEGLPIRIVKNLR+CWDCHDV+KMISK F R
Sbjct: 531 LFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFER 590

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRDRNRFHHFKDGECSCKDFW
Sbjct: 591 EIIVRDRNRFHHFKDGECSCKDFW 614

[Close]
BLAST of Cla010155 vs. NCBI nr
Match: gi|700196697|gb|KGN51874.1| (hypothetical protein Csa_5G604190 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 1.9e-74
Identity = 134/144 (93.06%), Postives = 138/144 (95.83%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKAEGISKLPGCSVMEVNGEVHEFF GDKSHPSYD IETMWGEISKRLKLAGYVA+TN V
Sbjct: 392 MKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSV 451

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           LFDIEEEEKEDALCKHSEKMAIAFGL SLKEGLPIRIVKNLR+CWDCHDV+KMISK F R
Sbjct: 452 LFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFER 511

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRDRNRFHHFKDGECSCKDFW
Sbjct: 512 EIIVRDRNRFHHFKDGECSCKDFW 535

[Close]
BLAST of Cla010155 vs. NCBI nr
Match: gi|657994461|ref|XP_008389535.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica])

HSP 1 Score: 274.2 bits (700), Expect = 1.3e-70
Identity = 128/144 (88.89%), Postives = 137/144 (95.14%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKA+G+ KLPGCSV+EV+GEVHEF VGDKSHP Y+ IETM GEIS+RLKLAGYVANTNPV
Sbjct: 472 MKAKGVRKLPGCSVLEVDGEVHEFLVGDKSHPRYNEIETMLGEISRRLKLAGYVANTNPV 531

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           LFDIEEEEKEDALCKHSEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK FNR
Sbjct: 532 LFDIEEEEKEDALCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKLFNR 591

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EIVVRDRNRFHHFKDGECSCK +W
Sbjct: 592 EIVVRDRNRFHHFKDGECSCKGYW 615

[Close]
BLAST of Cla010155 vs. NCBI nr
Match: gi|645229921|ref|XP_008221687.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Prunus mume])

HSP 1 Score: 272.3 bits (695), Expect = 4.8e-70
Identity = 126/144 (87.50%), Postives = 136/144 (94.44%), Query Frame = 1 

Query: 1   MKAEGISKLPGCSVMEVNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVANTNPV 60
           MKA+G+ KLPGCSV+EV+GEVHEF VGDKSHP YD IE M GEIS+RLKLAGYVANTNPV
Sbjct: 472 MKAKGVRKLPGCSVLEVDGEVHEFLVGDKSHPRYDEIEAMLGEISRRLKLAGYVANTNPV 531

Query: 61  LFDIEEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKTFNR 120
           LFDIEEEEKEDALCKHSEK+AIAFGLISLKEG+PIRIVKNLRVCWDCHDVTKMISK FNR
Sbjct: 532 LFDIEEEEKEDALCKHSEKVAIAFGLISLKEGVPIRIVKNLRVCWDCHDVTKMISKLFNR 591

Query: 121 EIVVRDRNRFHHFKDGECSCKDFW 145
           EI+VRDRNRFHHF+DGECSCK +W
Sbjct: 592 EIIVRDRNRFHHFQDGECSCKGYW 615

The following BLAST results are available for this feature:
BLAST of Cla010155 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP410_ARATH1.6e-6275.69Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th... [more]
PP295_ARATH4.8e-4660.42Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN... [more]
PP354_ARATH2.0e-4460.42Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
PP330_ARATH1.0e-4358.33Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN... [more]
PP224_ARATH2.9e-4357.64Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN... [more]
BLAST of Cla010155 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSJ7_CUCSA1.3e-7493.06Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604190 PE=4 SV=1[more]
M5XCT1_PRUPE1.3e-6986.81Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1[more]
V4SVA4_9ROSI3.1e-6883.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030908mg PE=4 SV=1[more]
A0A067H5C2_CITSI1.0e-6681.94Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012539mg PE=4 SV=1[more]
W9R9L3_9ROSA1.1e-6581.94Uncharacterized protein OS=Morus notabilis GN=L484_021080 PE=4 SV=1[more]
BLAST of Cla010155 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090971|ref|XP_008446300.1|7.6e-7695.83PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum... [more]
gi|449435364|ref|XP_004135465.1|1.9e-7493.06PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum... [more]
gi|700196697|gb|KGN51874.1|1.9e-7493.06hypothetical protein Csa_5G604190 [Cucumis sativus][more]
gi|657994461|ref|XP_008389535.1|1.3e-7088.89PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus... [more]
gi|645229921|ref|XP_008221687.1|4.8e-7087.50PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Prunu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU15012watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010155Cla010155.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU15012WMU15012transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
No results

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla010155Cla97C05G106710Watermelon (97103) v2wmwmbB207
Cla010155ClCG05G024610Watermelon (Charleston Gray)wcgwmB285
Cla010155CmaCh18G011790Cucurbita maxima (Rimu)cmawmB372
Cla010155Lsi04G004610Bottle gourd (USVL1VR-Ls)lsiwmB312
Cla010155Carg17243Silver-seed gourdcarwmB0097
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010155Cucurbita pepo (Zucchini)cpewmB031
Cla010155Cucurbita pepo (Zucchini)cpewmB432
Cla010155Cucurbita pepo (Zucchini)cpewmB654
Cla010155Bottle gourd (USVL1VR-Ls)lsiwmB195
Cla010155Bottle gourd (USVL1VR-Ls)lsiwmB196
Cla010155Bottle gourd (USVL1VR-Ls)lsiwmB257
Cla010155Bottle gourd (USVL1VR-Ls)lsiwmB403
Cla010155Cucumber (Gy14) v2cgybwmB224
Cla010155Cucumber (Gy14) v2cgybwmB035
Cla010155Cucumber (Gy14) v2cgybwmB380
Cla010155Cucumber (Gy14) v2cgybwmB377
Cla010155Melon (DHL92) v3.6.1medwmB061
Cla010155Melon (DHL92) v3.6.1medwmB267
Cla010155Melon (DHL92) v3.6.1medwmB370
Cla010155Silver-seed gourdcarwmB0202
Cla010155Silver-seed gourdcarwmB0256
Cla010155Silver-seed gourdcarwmB0436
Cla010155Silver-seed gourdcarwmB0839
Cla010155Cucumber (Chinese Long) v3cucwmB041
Cla010155Cucumber (Chinese Long) v3cucwmB044
Cla010155Cucumber (Chinese Long) v3cucwmB250
Cla010155Cucumber (Chinese Long) v3cucwmB428
Cla010155Cucumber (Chinese Long) v3cucwmB431
Cla010155Watermelon (97103) v2wmwmbB230
Cla010155Watermelon (97103) v2wmwmbB196
Cla010155Watermelon (97103) v2wmwmbB198
Cla010155Watermelon (97103) v2wmwmbB215
Cla010155Wax gourdwgowmB044
Cla010155Wax gourdwgowmB130
Cla010155Wax gourdwgowmB495
Cla010155Wax gourdwgowmB550
Cla010155Watermelon (97103) v1wmwmB018
Cla010155Watermelon (97103) v1wmwmB045
Cla010155Watermelon (97103) v1wmwmB120
Cla010155Watermelon (97103) v1wmwmB136
Cla010155Cucumber (Gy14) v1cgywmB126
Cla010155Cucumber (Gy14) v1cgywmB282
Cla010155Cucumber (Gy14) v1cgywmB382
Cla010155Cucumber (Gy14) v1cgywmB524
Cla010155Cucumber (Gy14) v1cgywmB613
Cla010155Cucurbita maxima (Rimu)cmawmB268
Cla010155Cucurbita maxima (Rimu)cmawmB111
Cla010155Cucurbita maxima (Rimu)cmawmB374
Cla010155Cucurbita maxima (Rimu)cmawmB702
Cla010155Cucurbita moschata (Rifu)cmowmB105
Cla010155Cucurbita moschata (Rifu)cmowmB101
Cla010155Cucurbita moschata (Rifu)cmowmB230
Cla010155Cucurbita moschata (Rifu)cmowmB365
Cla010155Cucurbita moschata (Rifu)cmowmB698
Cla010155Melon (DHL92) v3.5.1mewmB021
Cla010155Melon (DHL92) v3.5.1mewmB061
Cla010155Melon (DHL92) v3.5.1mewmB155
Cla010155Melon (DHL92) v3.5.1mewmB275
Cla010155Melon (DHL92) v3.5.1mewmB374
Cla010155Watermelon (Charleston Gray)wcgwmB029
Cla010155Watermelon (Charleston Gray)wcgwmB068
Cla010155Watermelon (Charleston Gray)wcgwmB140
Cla010155Watermelon (Charleston Gray)wcgwmB328
Cla010155Cucumber (Chinese Long) v2cuwmB035
Cla010155Cucumber (Chinese Long) v2cuwmB037
Cla010155Cucumber (Chinese Long) v2cuwmB238
Cla010155Cucumber (Chinese Long) v2cuwmB401
Cla010155Cucumber (Chinese Long) v2cuwmB404