Lsi04G004160 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G004160
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description50S ribosomal protein L18
Locationchr04 : 4030471 .. 4031150 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACAACGGCAAGCAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAATCTATGCGTTCAAGTCCCTCATGCACCACCATCGTAAGTCTATATTCTTAAGGTCGGACTTGAAATTAAGAGCAAAAAAGTTCCATTAAGAAACTATTACTAAATATGAAAGGCCTAAGTTTTTTCTGGTTTTGGTGATTACAGGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGACATGCGAGGACTTGAACATACACGAAATATCATCTTACGATCGAAATGGGTTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTTGCGCTATGGATTCTTACCACGATAAATATACCAAGAATTAAGGCAAGTTGTAAATGTAAATGCCTTAATTTTTATCATTCATTTAAATTTCTTCGTTGAACTATGGAGAAAAGGGTTATCAGGACAATGGAAATCCAAGATAATCAATAGAAATCTGTGGTTGATCAAACTTAATACCAATCATTTTAAGCACAAACATCACTGAAAATGAATTGTGATTAAGCTCGATTTGGTAAAATTCAATTGGTTACCTATTGTTACTGT

mRNA sequence

ATGGATAACAACGGCAAGCAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAATCTATGCGTTCAAGTCCCTCATGCACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGACATGCGAGGACTTGAACATACACGAAATATCATCTTACGATCGAAATGGGTTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTTGCGCTATGGATTCTTACCACGATAAATATACCAAGAATTAAGGCAAGTTGTAAATGTAAATGCCTTAATTTTTATCATTCATTTAAATTTCTTCGTTGAACTATGGAGAAAAGGGTTATCAGGACAATGGAAATCCAAGATAATCAATAGAAATCTGTGGTTGATCAAACTTAATACCAATCATTTTAAGCACAAACATCACTGAAAATGAATTGTGATTAAGCTCGATTTGGTAAAATTCAATTGGTTACCTATTGTTACTGT

Coding sequence (CDS)

ATGGATAACAACGGCAAGCAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAATCTATGCGTTCAAGTCCCTCATGCACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGACATGCGAGGACTTGAACATACACGAAATATCATCTTACGATCGAAATGGGTTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTTGCGCTATGGATTCTTACCACGATAA

Protein sequence

MDNNGKQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLPR
Homology
[Close]
BLAST of Lsi04G004160 vs. Swiss-Prot
Match: RL18_SORC5 (50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) GN=rplR PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-11
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS-PSCTTIEAAQHV 65
           K+  GTP RPRLSVF S K +YA ++DD + K L + STL K ++ S      +EAA+ V
Sbjct: 17  KKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDEDNKVEAAKKV 76

Query: 66  GEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG 106
           G  + + C++  I ++  +DRNG+    ++ A   A    G
Sbjct: 77  GALIARICKERQIDKV-VFDRNGYLYHGRVSALAQAAREAG 116

[Close]
BLAST of Lsi04G004160 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-10
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQ 65
           K+ +GT  RPRLSVF S+K LYA ++DD     L   ST+ KS+       +  T+E AQ
Sbjct: 66  KKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQ 125

Query: 66  HVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG 106
            +GE + K+C +  I ++  +DR GF    +++A   A    G
Sbjct: 126 KIGEVIAKSCLEKGITKV-VFDRGGFLYHGRIKALADAARENG 167

[Close]
BLAST of Lsi04G004160 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-10
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQ 65
           K+ NGT  RPRL VF S+K LY  ++DD     L   ST QK +       S  TIE A+
Sbjct: 66  KKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAK 125

Query: 66  HVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG 106
            VGE + K+C +  I ++ ++DR G+    +++A   A   +G
Sbjct: 126 KVGEVIAKSCLEKGITKV-AFDRGGYPYHGRIEALAAAAREHG 167

[Close]
BLAST of Lsi04G004160 vs. Swiss-Prot
Match: RL18_MYCCT (50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rplR PE=3 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-09
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 1 

Query: 10  GTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVGEELV 69
           GT  RPRL+VF S+   YA ++DD     L   STL+  ++S    + I+AA+ V EEL 
Sbjct: 22  GTAERPRLNVFKSNTNFYAQIIDDTKGVTLVSASTLKMDLKSK---SNIQAAEKVAEELT 81

Query: 70  KTCEDLNIHEISSYDRNGFARGEKMQAF 98
           K     NI+++  +DRNG+    K++AF
Sbjct: 82  KKALAANINQV-VFDRNGYLYHGKIKAF 105

[Close]
BLAST of Lsi04G004160 vs. Swiss-Prot
Match: RL18_DICTD (50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplR PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-08
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS-PSCTTIEAAQHV 65
           K+  GTP RPRL+V+ S + +YA ++DD     L   S+L+K +RS   S   IEAA+ V
Sbjct: 20  KKITGTPERPRLAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQLKSTKNIEAAKLV 79

Query: 66  GEELVKTCEDLNIHEISSYDRNGFARGEKMQA 97
           GE + K   +  I  +  +DR GF    K++A
Sbjct: 80  GEVIAKRALEKGIKRV-VFDRGGFLYHGKVKA 110

[Close]
BLAST of Lsi04G004160 vs. TrEMBL
Match: A0A0A0KQM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605190 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.1e-47
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR +PSCTTIEAAQHVG
Sbjct: 78  KKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTPSCTTIEAAQHVG 137

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFL 108
           EELVK C DLNIHEIS YDRNGFA GEKMQAFEIAI RYGFL
Sbjct: 138 EELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFL 179

[Close]
BLAST of Lsi04G004160 vs. TrEMBL
Match: W9SAU8_9ROSA (50S ribosomal protein L18 OS=Morus notabilis GN=L484_015661 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.9e-44
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K+YNGTP +PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS+  +PSCTT EAA+ VG
Sbjct: 3   KKYNGTPMKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSIHQNPSCTTTEAAKRVG 62

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLPR 110
           EEL+K C DLNI+EISSYDRNGFARGE+MQAFEIAI  +GFLPR
Sbjct: 63  EELIKACNDLNINEISSYDRNGFARGERMQAFEIAISSHGFLPR 106

[Close]
BLAST of Lsi04G004160 vs. TrEMBL
Match: A0A0B0MJN7_GOSAR (50S ribosomal L18, chloroplastic-like protein OS=Gossypium arboreum GN=F383_18119 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.5e-43
Identity = 85/103 (82.52%), Postives = 95/103 (92.23%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K++NGTP RPRLSVFCS+KQLYAMLVDD+NKKCLFYGSTLQKS+R  P+CTTI+AA+ VG
Sbjct: 61  KKFNGTPRRPRLSVFCSEKQLYAMLVDDKNKKCLFYGSTLQKSIRDDPTCTTIDAAKRVG 120

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLP 109
           EELVKTC DLNI+EIS YDRNGFARGE+MQAFEIAI  YGFLP
Sbjct: 121 EELVKTCIDLNINEISYYDRNGFARGERMQAFEIAIANYGFLP 163

[Close]
BLAST of Lsi04G004160 vs. TrEMBL
Match: A0A068V9U8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00011029001 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-42
Identity = 84/104 (80.77%), Postives = 96/104 (92.31%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K++NGT T+PRLSVFCSDKQLYAM+VDDQNK+CLFYGSTLQKS+R  PSCTT+EAAQ VG
Sbjct: 66  KKFNGTATKPRLSVFCSDKQLYAMVVDDQNKRCLFYGSTLQKSIRQDPSCTTMEAAQRVG 125

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLPR 110
           EELVK C DL+I+EISSYDRNG ARGE+M+AFEIAI R+GFLPR
Sbjct: 126 EELVKACIDLDINEISSYDRNGLARGERMRAFEIAISRHGFLPR 169

[Close]
BLAST of Lsi04G004160 vs. TrEMBL
Match: A0A0D2PWV7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G180500 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-42
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K++NGTP RPRLSVFCS+KQLYAMLVDD+NKKCLFYGSTLQKS+R  P+CTTI+AA+ VG
Sbjct: 61  KKFNGTPRRPRLSVFCSEKQLYAMLVDDKNKKCLFYGSTLQKSIRDDPTCTTIDAAKRVG 120

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLP 109
           EELVK C DLNI+EIS YDRNGFARGE+MQAFEIAI  YGFLP
Sbjct: 121 EELVKACIDLNINEISYYDRNGFARGERMQAFEIAISNYGFLP 163

[Close]
BLAST of Lsi04G004160 vs. TAIR10
Match: AT1G14205.1 (AT1G14205.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-40
Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K++ GT T+PRLSVFCSDKQLYAMLVDD NKKCLFY STLQKS+R  P CT IEAA+ VG
Sbjct: 63  KKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCTVIEAAKRVG 122

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLP 109
           EEL+K   DL I+EISSYDRNG  RGE+MQAFEIAI ++GFLP
Sbjct: 123 EELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFLP 165

[Close]
BLAST of Lsi04G004160 vs. TAIR10
Match: AT1G48350.1 (AT1G48350.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSS---PSCTTIEAAQ 65
           K+ NGT  RPRL VF S+K LY  ++DD     L   ST QK +       S  TIE A+
Sbjct: 66  KKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAK 125

Query: 66  HVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYG 106
            VGE + K+C +  I ++ ++DR G+    +++A   A   +G
Sbjct: 126 KVGEVIAKSCLEKGITKV-AFDRGGYPYHGRIEALAAAAREHG 167

[Close]
BLAST of Lsi04G004160 vs. NCBI nr
Match: gi|659091081|ref|XP_008446358.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 6.6e-48
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR + SCTTIEAAQHVG
Sbjct: 78  KKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTLSCTTIEAAQHVG 137

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLPR 110
           EELVK C DLNIHEISSYDRNGFARGEKMQAFEIAI RYGFL R
Sbjct: 138 EELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQR 181

[Close]
BLAST of Lsi04G004160 vs. NCBI nr
Match: gi|449434778|ref|XP_004135173.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 7.3e-47
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K+YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR +PSCTTIEAAQHVG
Sbjct: 78  KKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTPSCTTIEAAQHVG 137

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFL 108
           EELVK C DLNIHEIS YDRNGFA GEKMQAFEIAI RYGFL
Sbjct: 138 EELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFL 179

[Close]
BLAST of Lsi04G004160 vs. NCBI nr
Match: gi|703145988|ref|XP_010108675.1| (50S ribosomal protein L18 [Morus notabilis])

HSP 1 Score: 184.5 bits (467), Expect = 9.9e-44
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K+YNGTP +PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS+  +PSCTT EAA+ VG
Sbjct: 3   KKYNGTPMKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSIHQNPSCTTTEAAKRVG 62

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLPR 110
           EEL+K C DLNI+EISSYDRNGFARGE+MQAFEIAI  +GFLPR
Sbjct: 63  EELIKACNDLNINEISSYDRNGFARGERMQAFEIAISSHGFLPR 106

[Close]
BLAST of Lsi04G004160 vs. NCBI nr
Match: gi|728811981|gb|KHG00597.1| (50S ribosomal L18, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 181.8 bits (460), Expect = 6.4e-43
Identity = 85/103 (82.52%), Postives = 95/103 (92.23%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K++NGTP RPRLSVFCS+KQLYAMLVDD+NKKCLFYGSTLQKS+R  P+CTTI+AA+ VG
Sbjct: 61  KKFNGTPRRPRLSVFCSEKQLYAMLVDDKNKKCLFYGSTLQKSIRDDPTCTTIDAAKRVG 120

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLP 109
           EELVKTC DLNI+EIS YDRNGFARGE+MQAFEIAI  YGFLP
Sbjct: 121 EELVKTCIDLNINEISYYDRNGFARGERMQAFEIAIANYGFLP 163

[Close]
BLAST of Lsi04G004160 vs. NCBI nr
Match: gi|823211460|ref|XP_012438557.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Gossypium raimondii])

HSP 1 Score: 179.5 bits (454), Expect = 3.2e-42
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 6   KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRSSPSCTTIEAAQHVG 65
           K++NGTP RPRLSVFCS+KQLYAMLVDD+NKKCLFYGSTLQKS+R  P+CTTI+AA+ VG
Sbjct: 61  KKFNGTPRRPRLSVFCSEKQLYAMLVDDKNKKCLFYGSTLQKSIRDDPTCTTIDAAKRVG 120

Query: 66  EELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAILRYGFLP 109
           EELVK C DLNI+EIS YDRNGFARGE+MQAFEIAI  YGFLP
Sbjct: 121 EELVKACIDLNINEISYYDRNGFARGERMQAFEIAISNYGFLP 163

The following BLAST results are available for this feature:
BLAST of Lsi04G004160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL18_SORC53.8e-1137.6250S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) GN=rplR PE=3 ... [more]
RK18_ORYSJ5.5e-1036.8950S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1... [more]
RK18_ARATH7.2e-1036.8950S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S... [more]
RL18_MYCCT6.1e-0939.7750S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain Cal... [more]
RL18_DICTD1.0e-0839.1350S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN... [more]
BLAST of Lsi04G004160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQM5_CUCSA5.1e-4792.16Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605190 PE=4 SV=1[more]
W9SAU8_9ROSA6.9e-4482.6950S ribosomal protein L18 OS=Morus notabilis GN=L484_015661 PE=4 SV=1[more]
A0A0B0MJN7_GOSAR4.5e-4382.5250S ribosomal L18, chloroplastic-like protein OS=Gossypium arboreum GN=F383_1811... [more]
A0A068V9U8_COFCA2.2e-4280.77Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00011029001 PE=4 SV=1[more]
A0A0D2PWV7_GOSRA2.2e-4281.55Uncharacterized protein OS=Gossypium raimondii GN=B456_008G180500 PE=4 SV=1[more]
BLAST of Lsi04G004160 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14205.15.4e-4074.76 Ribosomal L18p/L5e family protein[more]
AT1G48350.14.0e-1136.89 Ribosomal L18p/L5e family protein[more]
BLAST of Lsi04G004160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091081|ref|XP_008446358.1|6.6e-4892.31PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo][more]
gi|449434778|ref|XP_004135173.1|7.3e-4792.16PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus][more]
gi|703145988|ref|XP_010108675.1|9.9e-4482.6950S ribosomal protein L18 [Morus notabilis][more]
gi|728811981|gb|KHG00597.1|6.4e-4382.5250S ribosomal L18, chloroplastic -like protein [Gossypium arboreum][more]
gi|823211460|ref|XP_012438557.1|3.2e-4281.55PREDICTED: 50S ribosomal protein L18, chloroplastic [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004160.1Lsi04G004160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 7..97
score: 1.7
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 10..106
score: 1.1
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 6..109
score: 3.1
NoneNo IPR availablePANTHERPTHR12899:SF8RIBOSOMAL L18P/L5E FAMILY PROTEINcoord: 6..109
score: 3.1
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 13..103
score: 6.54

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G004160Cla010190Watermelon (97103) v1lsiwmB312
Lsi04G004160MELO3C012102Melon (DHL92) v3.5.1lsimeB281
Lsi04G004160Carg14404Silver-seed gourdcarlsiB217
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G004160Bottle gourd (USVL1VR-Ls)lsilsiB099
Lsi04G004160Bottle gourd (USVL1VR-Ls)lsilsiB101
Lsi04G004160Bottle gourd (USVL1VR-Ls)lsilsiB131
Lsi04G004160Bottle gourd (USVL1VR-Ls)lsilsiB139
Lsi04G004160Cucumber (Gy14) v1cgylsiB154
Lsi04G004160Cucumber (Gy14) v1cgylsiB256
Lsi04G004160Cucumber (Gy14) v1cgylsiB339
Lsi04G004160Cucumber (Gy14) v1cgylsiB465
Lsi04G004160Cucurbita maxima (Rimu)cmalsiB062
Lsi04G004160Cucurbita maxima (Rimu)cmalsiB215
Lsi04G004160Cucurbita maxima (Rimu)cmalsiB280
Lsi04G004160Cucurbita maxima (Rimu)cmalsiB379
Lsi04G004160Cucurbita maxima (Rimu)cmalsiB435
Lsi04G004160Cucurbita maxima (Rimu)cmalsiB678
Lsi04G004160Cucurbita moschata (Rifu)cmolsiB049
Lsi04G004160Cucurbita moschata (Rifu)cmolsiB204
Lsi04G004160Cucurbita moschata (Rifu)cmolsiB269
Lsi04G004160Cucurbita moschata (Rifu)cmolsiB364
Lsi04G004160Cucurbita moschata (Rifu)cmolsiB427
Lsi04G004160Cucurbita moschata (Rifu)cmolsiB429
Lsi04G004160Cucurbita moschata (Rifu)cmolsiB671
Lsi04G004160Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G004160Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G004160Cucurbita pepo (Zucchini)cpelsiB430
Lsi04G004160Cucurbita pepo (Zucchini)cpelsiB461
Lsi04G004160Cucurbita pepo (Zucchini)cpelsiB469
Lsi04G004160Wild cucumber (PI 183967)cpilsiB053
Lsi04G004160Wild cucumber (PI 183967)cpilsiB055
Lsi04G004160Wild cucumber (PI 183967)cpilsiB372
Lsi04G004160Wild cucumber (PI 183967)cpilsiB375
Lsi04G004160Cucumber (Chinese Long) v2culsiB053
Lsi04G004160Cucumber (Chinese Long) v2culsiB056
Lsi04G004160Cucumber (Chinese Long) v2culsiB368
Lsi04G004160Cucumber (Chinese Long) v2culsiB371
Lsi04G004160Melon (DHL92) v3.5.1lsimeB287
Lsi04G004160Melon (DHL92) v3.5.1lsimeB294
Lsi04G004160Watermelon (Charleston Gray)lsiwcgB253
Lsi04G004160Watermelon (Charleston Gray)lsiwcgB281
Lsi04G004160Watermelon (Charleston Gray)lsiwcgB283
Lsi04G004160Watermelon (Charleston Gray)lsiwcgB293
Lsi04G004160Watermelon (97103) v1lsiwmB284
Lsi04G004160Watermelon (97103) v1lsiwmB328
Lsi04G004160Watermelon (97103) v1lsiwmB341
Lsi04G004160Cucumber (Gy14) v2cgyblsiB048
Lsi04G004160Cucumber (Gy14) v2cgyblsiB337
Lsi04G004160Cucumber (Gy14) v2cgyblsiB341
Lsi04G004160Melon (DHL92) v3.6.1lsimedB292
Lsi04G004160Melon (DHL92) v3.6.1lsimedB297
Lsi04G004160Melon (DHL92) v3.6.1lsimedB302
Lsi04G004160Melon (DHL92) v3.6.1lsimedB308
Lsi04G004160Silver-seed gourdcarlsiB048
Lsi04G004160Silver-seed gourdcarlsiB091
Lsi04G004160Silver-seed gourdcarlsiB356
Lsi04G004160Cucumber (Chinese Long) v3cuclsiB061
Lsi04G004160Cucumber (Chinese Long) v3cuclsiB059
Lsi04G004160Cucumber (Chinese Long) v3cuclsiB393
Lsi04G004160Cucumber (Chinese Long) v3cuclsiB397
Lsi04G004160Watermelon (97103) v2lsiwmbB281
Lsi04G004160Watermelon (97103) v2lsiwmbB284
Lsi04G004160Watermelon (97103) v2lsiwmbB311
Lsi04G004160Wax gourdlsiwgoB354
Lsi04G004160Wax gourdlsiwgoB375
Lsi04G004160Wax gourdlsiwgoB380
Lsi04G004160Wax gourdlsiwgoB408