Carg14404 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14404
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L18
Location	Cucurbita_argyrosperma_scaffold_040 : 911307 .. 912716 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTGTCACAAGGAGGCCAAGTTGCCGGCGGGGAGAATTTCAACGGCACACACAGCCAAGCCACATTCATTCCGGCGGAACACTGACTAGACTGGTAGCTTCACGTAGCTTACCGATGGTTTTTCTGCATTTCACTTAGCTAAAATCTTCTCTCCCAGGTAATCAAAACTTCTGGGTTGTGGGCCTTTTTCTTTCCTTATTTCCGTTGGGTGTAGCTATTGATGAGTCTTGTTTTCAATACGGTGATTGGGTTTTGATTGGCTTTGTGTTCTGGATTGTCAACCAATTTTTCAGGGATTGCGTGCAACGTGCTCGACGAAATTCCTGACTGACGAAGACCCTGTCGTACAACATATATTGGGCATAAAAATCATTTCAAGAATGCCCTCTTTACCTCTCAATACAATAAATTTTGAAAAAGTTAATGGTGGCATGCATTTTCTAAATGTTCCTGGTCTGTTATCGAAAACTCCTACCCCCTTCTGGTTCCAGTCAAAGCCATTTAACTTTCCCAGCTTGAAACGTAGACGTAAGTGAGTCAATACGTGCATTAGCTCCTAATCTGTATGATAATCTATGGTTCTGTTCTTGGACGATGTTGGACACAAACTGGCATATATCTATTATACCAATTACTGGAACCAGATGGATTTTGTTTTATAACGAATTCCTGCATTCCATGTAGATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAACAGGAGGTTCCAGAAAAAGGTATGCACAAAATACATTTATACTAACATTGGAACTCTTTTAGTTTCTAAAACATTTGATGGTTTTCAACGCCAAGCAGTATAATGGCAGCTCTACAAAACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGCTGGTTGACGACCAGAACAAGAAGTGCCTGTTTTATGGAAGCACCTTACAGAAATCTATGCGTCCAAGTCCCTCATGCACCACCATCGTAAGTCTTCCTCAAAAGTCCTGTTAACAAACTACAAAAGGGTCTGATTGCTTTTTTGTTGGTTTGGCGATTACAGGAAGCTGCTCAGCATGTTGGTGAAGAACTTGTGAAGGCATGTGAAAACTTGAACATACACGAAATATCATCTTACGATCGAAATGGATTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGGGCTATGGGTTCTTGCAACGATAGATATATGCCAAGAACTAAGCCAAGTTGTAAATGTAAATGCCTGTTATAATAACAAAGTCTGCTGTGTATCTCTTGTTAAAAGCCAAGCTGTCACGCCGGTGAGTGAATTATCGTTTGGACAATAAAACTCCGAGATACTCGATAGAAATCTATCGTTGATCAAATTTAATAG

mRNA sequence

TGCTGTCACAAGGAGGCCAAGTTGCCGGCGGGGAGAATTTCAACGGCACACACAGCCAAGCCACATTCATTCCGGCGGAACACTGACTAGACTGGTAGCTTCACGTAGCTTACCGATGGTTTTTCTGCATTTCACTTAGCTAAAATCTTCTCTCCCAGGGATTGCGTGCAACGTGCTCGACGAAATTCCTGACTGACGAAGACCCTGTCGTACAACATATATTGGGCATAAAAATCATTTCAAGAATGCCCTCTTTACCTCTCAATACAATAAATTTTGAAAAAGTTAATGGTGGCATGCATTTTCTAAATGTTCCTGGTCTGTTATCGAAAACTCCTACCCCCTTCTGGTTCCAGTCAAAGCCATTTAACTTTCCCAGCTTGAAACGTAGACGTAAGTGAGTCAATACGTGCATTAGCTCCTAATCTGTATGATAATCTATGGTTCTGTTCTTGGACGATGTTGGACACAAACTGGCATATATCTATTATACCAATTACTGGAACCAGATGGATTTTGTTTTATAACGAATTCCTGCATTCCATGTAGATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAACAGGAGGTTCCAGAAAAAGTATAATGGCAGCTCTACAAAACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGCTGGTTGACGACCAGAACAAGAAGTGCCTGTTTTATGGAAGCACCTTACAGAAATCTATGCGTCCAAGTCCCTCATGCACCACCATCGAAGCTGCTCAGCATGTTGGTGAAGAACTTGTGAAGGCATGTGAAAACTTGAACATACACGAAATATCATCTTACGATCGAAATGGATTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGGGCTATGGGTTCTTGCAACGATAGATATATGCCAAGAACTAAGCCAAGTTGTAAATGTAAATGCCTGTTATAATAACAAAGTCTGCTGTGTATCTCTTGTTAAAAGCCAAGCTGTCACGCCGGTGAGTGAATTATCGTTTGGACAATAAAACTCCGAGATACTCGATAGAAATCTATCGTTGATCAAATTTAATAG

Coding sequence (CDS)

ATGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAACAGGAGGTTCCAGAAAAAGTATAATGGCAGCTCTACAAAACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGCTGGTTGACGACCAGAACAAGAAGTGCCTGTTTTATGGAAGCACCTTACAGAAATCTATGCGTCCAAGTCCCTCATGCACCACCATCGAAGCTGCTCAGCATGTTGGTGAAGAACTTGTGAAGGCATGTGAAAACTTGAACATACACGAAATATCATCTTACGATCGAAATGGATTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGGGCTATGGGTTCTTGCAACGATAG

Protein sequence

MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQR

Homology

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BLAST of Carg14404 vs. NCBI nr
Match: XP_022957246.1 (uncharacterized protein LOC111458689 [Cucurbita moschata])

HSP 1 Score: 249.2 bits (635), Expect = 7.3e-63
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST
Sbjct: 57  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 116

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYDRNGFARGEKMQAFEIAISGY
Sbjct: 117 LQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGY 176

Query: 121 GFLQR 126
           GFLQR
Sbjct: 177 GFLQR 181

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BLAST of Carg14404 vs. NCBI nr
Match: XP_023547360.1 (uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.2 bits (635), Expect = 7.3e-63
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST
Sbjct: 57  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 116

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYDRNGFARGEKMQAFEIAISGY
Sbjct: 117 LQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGY 176

Query: 121 GFLQR 126
           GFLQR
Sbjct: 177 GFLQR 181

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BLAST of Carg14404 vs. NCBI nr
Match: XP_022987454.1 (uncharacterized protein LOC111484997 [Cucurbita maxima])

HSP 1 Score: 243.8 bits (621), Expect = 3.1e-61
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           MIQARGNSKTESAKVRNRR QKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST
Sbjct: 57  MIQARGNSKTESAKVRNRRLQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 116

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYDRNGFARGEKMQAFEIAIS Y
Sbjct: 117 LQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRY 176

Query: 121 GFLQR 126
           GFLQR
Sbjct: 177 GFLQR 181

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BLAST of Carg14404 vs. NCBI nr
Match: XP_008446359.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008446360.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008446361.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 3.5e-57
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           MIQARGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGST
Sbjct: 57  MIQARGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 116

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKSMRP+ SCTTIEAAQHVGEELVK C +LNIHEISSYDRNGFARGEKMQAFEIAIS Y
Sbjct: 117 LQKSMRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRY 176

Query: 121 GFLQR 126
           GFLQR
Sbjct: 177 GFLQR 181

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BLAST of Carg14404 vs. NCBI nr
Match: XP_022151144.1 (uncharacterized protein LOC111019142 [Momordica charantia] >XP_022151145.1 uncharacterized protein LOC111019142 [Momordica charantia])

HSP 1 Score: 226.1 bits (575), Expect = 6.6e-56
Identity = 111/125 (88.80%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           +IQARG+SK ESAK+RNRR QKKYNG+  +PRLSVFCSDKQLYAMLVDDQNKKCLFYGST
Sbjct: 57  IIQARGHSKPESAKIRNRRMQKKYNGTPKRPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 116

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKSMRP+PSCTTIEAAQ+VGEELVK CE+LNIHEISSYDRNGFARGEKMQAFEIAIS Y
Sbjct: 117 LQKSMRPNPSCTTIEAAQYVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAISHY 176

Query: 121 GFLQR 126
           GFLQR
Sbjct: 177 GFLQR 181

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BLAST of Carg14404 vs. TAIR10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 178.3 bits (451), Expect = 2.9e-45
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           +I+ARGN++ ES K RNRR +KK+ G+ TKPRLSVFCSDKQLYAMLVDD NKKCLFY ST
Sbjct: 42  VIEARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYAST 101

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKS+R  P CT IEAA+ VGEEL+KA  +L I+EISSYDRNG  RGE+MQAFEIAI+ +
Sbjct: 102 LQKSIRGDPPCTVIEAAKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQH 161

Query: 121 GFL 124
           GFL
Sbjct: 162 GFL 164

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BLAST of Carg14404 vs. TAIR10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-12
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           +++A+  + +E    R+ R +KK NG++ +PRL VF S+K LY  ++DD     L   ST
Sbjct: 45  VVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASAST 104

Query: 61  LQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAI 120
            QK +       S  TIE A+ VGE + K+C    I ++ ++DR G+    +++A   A 
Sbjct: 105 KQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV-AFDRGGYPYHGRIEALAAAA 164

Query: 121 SGYG 122
             +G
Sbjct: 165 REHG 167

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BLAST of Carg14404 vs. Swiss-Prot
Match: sp|P82195|RK18_SPIOL (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-11
Identity = 40/126 (31.75%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           +IQA+ +++ E    R+ R +KK  G+  +PRL VF S+K LY  ++DD     L   ST
Sbjct: 41  LIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAAST 100

Query: 61  LQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAI 120
           +QK++  +    +  T+E AQ +GE + K+C    I ++ ++DR G+    +++A   A 
Sbjct: 101 MQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKV-AFDRGGYPYHGRVKALADAA 160

Query: 121 SGYGFL 124
             +G +
Sbjct: 161 REHGLV 165

[Close]

BLAST of Carg14404 vs. Swiss-Prot
Match: sp|Q9SX68|RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.6e-11
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           +++A+  + +E    R+ R +KK NG++ +PRL VF S+K LY  ++DD     L   ST
Sbjct: 45  VVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASAST 104

Query: 61  LQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAI 120
            QK +       S  TIE A+ VGE + K+C    I ++ ++DR G+    +++A   A 
Sbjct: 105 KQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV-AFDRGGYPYHGRIEALAAAA 164

Query: 121 SGYG 122
             +G
Sbjct: 165 REHG 167

[Close]

BLAST of Carg14404 vs. Swiss-Prot
Match: sp|P04453|RL18_MYCCT (50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) OX=340047 GN=rplR PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-10
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 8   SKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP 67
           +KTE+ K R+ R + K  G++ +PRL+VF S+   YA ++DD     L   STL+  ++ 
Sbjct: 4   TKTEARKRRHFRVRHKVVGTAERPRLNVFKSNTNFYAQIIDDTKGVTLVSASTLKMDLK- 63

Query: 68  SPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAF 114
             S + I+AA+ V EEL K     NI+++  +DRNG+    K++AF
Sbjct: 64  --SKSNIQAAEKVAEELTKKALAANINQV-VFDRNGYLYHGKIKAF 105

[Close]

BLAST of Carg14404 vs. Swiss-Prot
Match: sp|Q8SAY0|RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 16  RNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCT 75
           R+ R +KK +G++ +PRLSVF S+K LYA ++DD     L   ST+ KS+       +  
Sbjct: 60  RHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGP 119

Query: 76  TIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQA 113
           T+E AQ +GE + K+C    I ++  +DR GF    +++A
Sbjct: 120 TVEVAQKIGEVIAKSCLEKGITKV-VFDRGGFLYHGRIKA 158

[Close]

BLAST of Carg14404 vs. Swiss-Prot
Match: sp|A9FGF8|RL18_SORC5 (50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-09
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 16  RNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS-PSCTTI 75
           R  R +KK  G+  +PRLSVF S K +YA ++DD + K L + STL K ++ S      +
Sbjct: 11  RKLRIRKKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDEDNKV 70

Query: 76  EAAQHVGEELVKACENLNIHEISSYDRNGF 105
           EAA+ VG  + + C+   I ++  +DRNG+
Sbjct: 71  EAAKKVGALIARICKERQIDKV-VFDRNGY 99

[Close]

BLAST of Carg14404 vs. TrEMBL
Match: tr|A0A1S3BEE0|A0A1S3BEE0_CUCME (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.3e-57
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           MIQARGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGST
Sbjct: 57  MIQARGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 116

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKSMRP+ SCTTIEAAQHVGEELVK C +LNIHEISSYDRNGFARGEKMQAFEIAIS Y
Sbjct: 117 LQKSMRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRY 176

Query: 121 GFLQR 126
           GFLQR
Sbjct: 177 GFLQR 181

[Close]

BLAST of Carg14404 vs. TrEMBL
Match: tr|A0A0A0KQM5|A0A0A0KQM5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605190 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.8e-56
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 2   IQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTL 61
           IQARGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTL
Sbjct: 58  IQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTL 117

Query: 62  QKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGYG 121
           QKSMRP+PSCTTIEAAQHVGEELVK C +LNIHEIS YDRNGFA GEKMQAFEIAIS YG
Sbjct: 118 QKSMRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYG 177

Query: 122 FLQ 125
           FLQ
Sbjct: 178 FLQ 180

[Close]

BLAST of Carg14404 vs. TrEMBL
Match: tr|A0A151RSB3|A0A151RSB3_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_033059 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.5e-48
Identity = 97/125 (77.60%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           +I+AR N++TESAK+RNRR QKKYNG++T+PRLSVFCSDKQLYAMLVDD+NKKCLFYGST
Sbjct: 40  VIEARANTRTESAKIRNRRMQKKYNGTATQPRLSVFCSDKQLYAMLVDDKNKKCLFYGST 99

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKS+R  P C+T+EAAQ VGE LVKAC +LNI+EISSYDRNG  RGE++QAFEIAIS Y
Sbjct: 100 LQKSIREDPPCSTLEAAQRVGEALVKACVDLNINEISSYDRNGVRRGERLQAFEIAISSY 159

Query: 121 GFLQR 126
           GFL R
Sbjct: 160 GFLPR 164

[Close]

BLAST of Carg14404 vs. TrEMBL
Match: tr|A0A1R3JEH4|A0A1R3JEH4_COCAP (Ribosomal protein L18/L5 OS=Corchorus capsularis OX=210143 GN=CCACVL1_06584 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.6e-48
Identity = 97/125 (77.60%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           +I+AR N++TE+AK+RNRR +KK+NG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGST
Sbjct: 43  VIEARANTRTENAKIRNRRMRKKFNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 102

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQKS+R  PSCTTIEAA+ VGEELVKAC +LNI+EIS YDRNGFARGE+MQAFEIAI  +
Sbjct: 103 LQKSIRDDPSCTTIEAAKRVGEELVKACVDLNINEISYYDRNGFARGERMQAFEIAIGHF 162

Query: 121 GFLQR 126
           G L R
Sbjct: 163 GLLPR 167

[Close]

BLAST of Carg14404 vs. TrEMBL
Match: tr|A0A2R6QQW9|A0A2R6QQW9_ACTCH (50S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14131 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.6e-48
Identity = 94/125 (75.20%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 60
           +++AR N++ ESAK+RNRR +KK+NG+ T+PRLSVFCS+KQLYAMLVDDQNKKCLFYGST
Sbjct: 40  VVEARANTRKESAKIRNRRLRKKFNGTPTRPRLSVFCSEKQLYAMLVDDQNKKCLFYGST 99

Query: 61  LQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQAFEIAISGY 120
           LQ+S+R +P C+T+EAA+ VG+ELVKAC NL+IHEISSYDRNGFARGEKMQAFE+AIS +
Sbjct: 100 LQQSIRENPPCSTVEAAERVGDELVKACINLDIHEISSYDRNGFARGEKMQAFEVAISRH 159

Query: 121 GFLQR 126
           GFL R
Sbjct: 160 GFLPR 164

The following BLAST results are available for this feature:

BLAST of Carg14404 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957246.1	7.3e-63	99.20	uncharacterized protein LOC111458689 [Cucurbita moschata]	[more]
XP_023547360.1	7.3e-63	99.20	uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo]	[more]
XP_022987454.1	3.1e-61	97.60	uncharacterized protein LOC111484997 [Cucurbita maxima]	[more]
XP_008446359.1	3.5e-57	92.00	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008446360.1 PREDICTED: 5...	[more]
XP_022151144.1	6.6e-56	88.80	uncharacterized protein LOC111019142 [Momordica charantia] >XP_022151145.1 uncha...	[more]

BLAST of Carg14404 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14205.1	2.9e-45	72.36	Ribosomal L18p/L5e family protein	[more]
AT1G48350.1	4.2e-12	33.06	Ribosomal L18p/L5e family protein	[more]

BLAST of Carg14404 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82195\|RK18_SPIOL	2.6e-11	31.75	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
sp\|Q9SX68\|RK18_ARATH	7.6e-11	33.06	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
sp\|P04453\|RL18_MYCCT	8.4e-10	37.74	50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain Cal...	[more]
sp\|Q8SAY0\|RK18_ORYSJ	1.4e-09	37.00	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|A9FGF8\|RL18_SORC5	2.4e-09	38.89	50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=...	[more]

BLAST of Carg14404 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BEE0\|A0A1S3BEE0_CUCME	2.3e-57	92.00	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1	[more]
tr\|A0A0A0KQM5\|A0A0A0KQM5_CUCSA	9.8e-56	91.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605190 PE=4 SV=1	[more]
tr\|A0A151RSB3\|A0A151RSB3_CAJCA	1.5e-48	77.60	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_033059 PE=4 SV=1	[more]
tr\|A0A1R3JEH4\|A0A1R3JEH4_COCAP	2.6e-48	77.60	Ribosomal protein L18/L5 OS=Corchorus capsularis OX=210143 GN=CCACVL1_06584 PE=4...	[more]
tr\|A0A2R6QQW9\|A0A2R6QQW9_ACTCH	2.6e-48	75.20	50S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14404-RA	Carg14404-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 8..113 e-value: 3.5E-17 score: 62.7
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 3..125
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 25..122 e-value: 9.2E-26 score: 92.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR12899:SF8	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 3..125
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 21..116 e-value: 1.32909E-21 score: 82.5879
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 9..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14404	Cla010190	Watermelon (97103) v1	carwmB0231
Carg14404	Csa5G605190	Cucumber (Chinese Long) v2	carcuB0272
Carg14404	MELO3C012102	Melon (DHL92) v3.5.1	carmeB0244
Carg14404	ClCG05G024220	Watermelon (Charleston Gray)	carwcgB0235
Carg14404	CSPI05G23800	Wild cucumber (PI 183967)	carcpiB0276
Carg14404	Cucsa.285010	Cucumber (Gy14) v1	carcgyB0287
Carg14404	CmaCh04G016620	Cucurbita maxima (Rimu)	carcmaB0339
Carg14404	CmoCh04G017410	Cucurbita moschata (Rifu)	carcmoB0343
Carg14404	Lsi04G004160	Bottle gourd (USVL1VR-Ls)	carlsiB217
Carg14404	Cp4.1LG01g12430	Cucurbita pepo (Zucchini)	carcpeB0344
Carg14404	MELO3C012102.2	Melon (DHL92) v3.6.1	carmedB0253
Carg14404	CsaV3_5G032760	Cucumber (Chinese Long) v3	carcucB0275
Carg14404	Cla97C05G106260	Watermelon (97103) v2	carwmbB0247
Carg14404	Bhi07G001272	Wax gourd	carwgoB0310

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14404	Silver-seed gourd	carcarB110
Carg14404	Cucumber (Gy14) v2	carcgybB0259
Carg14404	Cucurbita maxima (Rimu)	carcmaB0338
Carg14404	Cucurbita moschata (Rifu)	carcmoB0340
Carg14404	Cucurbita pepo (Zucchini)	carcpeB0342