Lsi03G017960 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G017960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Mal d 1-associated protein
Location	chr03 : 29391207 .. 29395716 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAATCTCTCTCGTGTCTTCTGAAGCCGTGGCGCTCAAGAAAGACTCCACTGTAAAAGAGAATCTCGTGGAAGGGACGAAGGTTCGCGATCTCGAGCTTCGAAAATGGGATGGGTCTGGAGAGACGAGAACGGCGAATCGGATTCATCCGCGGGAGATGGCGCTAAGTTCAACAATTCCAGCCTTCCGTCCTCCAGCGATCGGTGTTCTACCAGAAAAGTGGTGAAGTCGCAGTGCAAGACCGAGGAGGTTGAGCCCGGAAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTTAGAGACTGCATTGGAAGGTGTGTGCATGTGTGTTTCTCCCACTTTTGTTGTCCTGTGGCAGTTTATTTTAACCTAACAATTGTTGTCTTTCGATTTAAGAACTGTGCTTTCTACAGTAGTGTGAATAATCAAATGGGTGTCGCCCTCAGTTCCTCCTGGTTGTTCCTAATTTTTATTTTCTTTGTAGTTTTTGGATATACCACAGATGTAAATTTAGAAGTATATTGTGAAAGGAAAAGGCTGGTTCATCTGCTATTTGTTAATTAAACTTCTGTTCGATGAATTGAACTACGGAGCCGTTTTGAGGGTAATTCGAAGTGTCAATCTTTCTGGAATCCTGTGGTGAAAAAGGGGCAAAAGGCAAAAGCATTTGGGTTCTTGAGGAAGAGCCTCCTTTCTCAAAGGGGTAGATTAACACTTATCCGGTCAGTCTTATCTTACATCCTTAGTTACTTCTTGTCTTTGCTTTGTTTCGGTTAGCAAGTCTATTGAGAAGATGATGAGAGATTTTCAATGGGAAGGGTTGAAGAGGGGGAGGTTCCCATCTTGTGAGGTGGGATGTGGTCTCAAAACCTTTGGCCTTGGGAGGTTTAGGCATTGGGAATTTGAAACTCTGTAAAGAGGTCTTGGTGGCAAAATCGGTGTGGCATTTTTTCTCGGAGCTGGTGCTTCATAGCTCACACTTTTGTGTGGGCTATAGACTATGGTTTTAAGGGCATGAGTGAAAAGCCTCTGTCAGCGATTTCTAATATTTTGTGTAACCACAATCCTCCCAGATGCCTTTATCTTATCCTCTCTTCGAAAAAGTAAAATTTTGAAAAAGGTCAAATTCTTTGTGTGCAGGTTTTGTTTTGCATAGAAAAATTAATAAATCGGAGTGTATTCAGGGATGATCTTCTATTGTGTCGATCTTGCAATGGTGCATTCTTTGTCAGATGCATGACGGGGATATTGATCCGCTATTGTGGGGGTGCTCATTTGCTCATTCTCTGTGGAGCAAATGCTTGAGTATGTTTGACTTATGTCTTGTTCGTGTCAAAGAGTGGTGCTCCATGGTTGAAGAGGTGCTCTTGAATCTCCTGTTTCGGGATAAAGGGAGAGTTTTGTGGTAGCCTTGTTTCCTTGCAGTGTTGTGGGGGATTTTGTTTGACAAATATAGCATAATTTTTAATTAGGTCGAGAGATCTTGGGAGGTTGTTAGGTTAACACGTGCTTATTGTTGTCTATTACTTGACCTTTTTTGTCGTTATGACCTTTGTTTGATCCTATTTGAGTACAACAAGGGGGGCATGGGGATGCGAACCTTCGACCTTAAGGGAAGTAGTACATGTCAATTATTGCTGAGCTCATTTTAGTCCTTGGTTTTGATCCTATTGGTTTGGGGTTTGTTTCATTAGTTGGTGTTTGGACTTTCTTTTGTGTGGGCTTGGTTGTTATGCCCTTGAACATTCTTTCATTTTCCTCAGTGAAAGCTTGGTTTCTTACCATAAAAATCACGACCTACCCTACTTATTGAGTCACTATGGTTTTTGGCCAAAATGACCAAGATAGAAGAAGACTATGGTTTTCACACATTCTCACTAGCTTCTTTAATTTCACATCCACGTGCCCATTTGGCTTCCTTTTGCTGAACTACCTTCCAAATCATGAAATTTATTAAATTAAGAATTTAGACACTTCAGTGTCCCATGAAGGGATCCGAAATTTTCATATCCTTTTGCCACTAAATAAATGTTTTTAACATTCTTTTTCTTGAAAGTTTGTGGATTTTAATAATTTGGAAAAACAAGAATGAGAGGAACTGAGGAAGAAACTGATGTATGAAGGAGGAGGAAAAGATAAGGGAGTTACCGAAATGGGTCTTGGAAGACGAGGAGAATGAGAGAGATGAAGGAGCTTGTGAAATTAGAGGGTTGAAACATGTTTCTTTAATCCTTTCTTAATTGAGGTCCAACTTCTAAACAATTAGGGTCAGAGATTATGGCTGAGGTCATTTGTATATCCTAGACCAGGGCTCCTCTCTAAAATCACATCAGGGTTGTATATTGTGATGTAGAATGGCAAGCAAGATTAGGAAAATATGTTACTCGGATGGAAAATTATGAAGATGATTGAGGAAAGCATTTCCTGGACTGCAGTTGTGCTGGCTGGATATTTGATGGTTGAATGACATGATTGGAAATCATTGGGTGGTGCCTTGAGTATCAGCGAGTAGAATCTGTGCATACACATATTGAAAAATAGATTGACTGGTAGAATTGGCTTTGGGATGTAGGCAGCCTTCAATGTGGATGACATTAGGAAATAAAGGGCAGTTTTGGGAATATTTTTCTAAGCCTGGCAGAGGAAGTTATATGACTATCTGTAAACAATAATGGGTGCAAAGTTATGAGTTTTCACATGTAAGCTTCATAAGGACCTTTTCTCTGCTGCATTAGTTCCTAGGCAGTACTATGCTTGATTGTTGAATTTATTGGTCAGAAGGTCAATCTTCTTTTCTAGTTCATTGGGAGGTGATTTCTTCTTCTCCTTTTGGACTTAAGCTGTCAATATTTCTAGCCTATTCATCAATTAGTTAAATTAAATTACCATTCTATTATTTGTTTTGGGGCTCCTCCATGGGTGCAAGACATGCTTCTGCTCCATACTTTTAAGCGTAATTATGGTTCTGCTTCTTATTTATGGTGACAATTACATGTCTCGTGGTAAAGGATAATTGTGATTGTTTTGTTTAGCTCCTGAAGGGAGGTAACGTATTCATTTCATTAGGGTTTTCTTCTTTTGGGCTAAAATATCACTGGTGATATGGTTTATGTTACACTCTAATACCCATCTTTACTTTTTTTATCTTTTTTTACTCCCTAATACTCATCTACACGACTAGTTATTTGGTCAAAAGATCAACAAAGTGGCTAAACATACGTTTTAAAGTTCCTAATGTTTAAGGCTTTTTCTATTTGATCCCTATTGTTTAAGAAGTTTTTACGTCTCTTATGTTTTGACATTTTTCAGTTCAGTCCCTCATTGTTCGGGAATGTTACAATTTGCTAATAATAATCTTACCTGGCATAATTCTTCAGAAATTTAGAAGAAGAAATAGGTTGGGAAAAGATTCTTATCCCGATGAGTTTCTAAGAAATCGGCAGAAATTAAGCTTTCTTCTCCTAGATGACCTTTTTTTTCCCTCCAAATTTCTGCAATTCATCAAGTAAGGTATTATGCCATGTAAGTTCACCATTAATCAATTTTAACTTCCACGTGAGAAGCTAAATTAAAAAATATTAATACACAAGAGACTAATTTGAAGCTTTTTAAACTATTGAAGACTATATTGAAAAATACCATAACATTACAAATATATTTAGCCTAAAATATTTATTACCAGTAACTATATATAAAAATAACAGATTTTTTTTATTATACATGGTTGGAAACTTTATAGTAATCCTCTAGTTACTCATCTTCCCTCCTTTAAAATTACTTGCTTCTAGTTGGTTACTTTAGTACACTGGTTTTCCTTCCTCCAACTATTCTCCCCATATAGAGCCTTTGCATTTCTTTTTTCCTCTTCCCTTCCTCACATAAAGGGATCCGAGGGTCCTATTCAAAAAACAAGACATATGACAATAATAGTTGCATCATTTTTGTACAGGCCAGTCGAAGTGATACAGTCCAACAAGGAATTTACAGAAGAGGATGTAACGGATCAGATGGTCAATAGGTCATTCTCATCGGGATCGTCCGAACATCGACCATTTGATTTCCCTGGGCTCCGTAGCGATATTGATGCCATTGAGCAGAGTCTCTTTGGCAGCATGAGGGGTTCTTTCAAGCCGCCGAAGAGATTAAGAATGGTTTCTTTGGTTCTTTCAGAGATCCACCCCTATTCAACAGAGAGTCTTCGTCCTCCCCGTCGATGAGACGAGGAATACCCATCGAAGATCATGAGCCAGTGTTCTTCTCTAATCCGAAAGAGCCCGATTCCGGTCACGTTGACCTATCTGGATTGGCCAGGGATGTCTAAATGCCCTAAATGAACCTCTGTCCTTTTTTTTCAGATGTTAGATACGATGGGTACACAGTATACTATCTTTGTTTTTGGTGGCTGTACATTTGGTAAGGGTTTTTTTTTTTTTTGTACGGATAGGTACACAGTATATTATGTTTATTTTTTTATCAATAAAATATACACTTTAGTTTTCCTTCAGAA

mRNA sequence

TTCAATCTCTCTCGTGTCTTCTGAAGCCGTGGCGCTCAAGAAAGACTCCACTGTAAAAGAGAATCTCGTGGAAGGGACGAAGGTTCGCGATCTCGAGCTTCGAAAATGGGATGGGTCTGGAGAGACGAGAACGGCGAATCGGATTCATCCGCGGGAGATGGCGCTAAGTTCAACAATTCCAGCCTTCCGTCCTCCAGCGATCGGTGTTCTACCAGAAAAGTGGTGAAGTCGCAGTGCAAGACCGAGGAGGTTGAGCCCGGAAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTTAGAGACTGCATTGGAAGGCCAGTCGAAGTGATACAGTCCAACAAGGAATTTACAGAAGAGGATGTAACGGATCAGATGGTCAATAGGTCATTCTCATCGGGATCGTCCGAACATCGACCATTTGATTTCCCTGGGCTCCGTAGCGATATTGATGCCATTGAGCAGAGTCTCTTTGGCAGCATGAGGGGTTCTTTCAAGCCGCCGAAGAGATTAAGAATGGTTTCTTTGGTTCTTTCAGAGATCCACCCCTATTCAACAGAGAGTCTTCGTCCTCCCCGTCGATGAGACGAGGAATACCCATCGAAGATCATGAGCCAGTGTTCTTCTCTAATCCGAAAGAGCCCGATTCCGGTCACGTTGACCTATCTGGATTGGCCAGGGATGTCTAAATGCCCTAAATGAACCTCTGTCCTTTTTTTTCAGATGTTAGATACGATGGGTACACAGTATACTATCTTTGTTTTTGGTGGCTGTACATTTGGTAAGGGTTTTTTTTTTTTTTGTACGGATAGGTACACAGTATATTATGTTTATTTTTTTATCAATAAAATATACACTTTAGTTTTCCTTCAGAA

Coding sequence (CDS)

ATGGGATGGGTCTGGAGAGACGAGAACGGCGAATCGGATTCATCCGCGGGAGATGGCGCTAAGTTCAACAATTCCAGCCTTCCGTCCTCCAGCGATCGGTGTTCTACCAGAAAAGTGGTGAAGTCGCAGTGCAAGACCGAGGAGGTTGAGCCCGGAAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTTAGAGACTGCATTGGAAGGCCAGTCGAAGTGATACAGTCCAACAAGGAATTTACAGAAGAGGATGTAACGGATCAGATGGTCAATAGGTCATTCTCATCGGGATCGTCCGAACATCGACCATTTGATTTCCCTGGGCTCCGTAGCGATATTGATGCCATTGAGCAGAGTCTCTTTGGCAGCATGAGGGGTTCTTTCAAGCCGCCGAAGAGATTAAGAATGGTTTCTTTGGTTCTTTCAGAGATCCACCCCTATTCAACAGAGAGTCTTCGTCCTCCCCGTCGATGA

Protein sequence

MGWVWRDENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRKCERTEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRSDIDAIEQSLFGSMRGSFKPPKRLRMVSLVLSEIHPYSTESLRPPRR

Homology

[Close]

BLAST of Lsi03G017960 vs. TrEMBL
Match: A0A0A0LGU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782830 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.1e-53
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 1   MGWVWRDENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGWVWRD+  +SDS A D  KFNNS+ PSSSD CSTR VV+S CKTEEVEPGKFVRKCER
Sbjct: 1   MGWVWRDDTDDSDSFAADADKFNNSTSPSSSDWCSTRNVVRSHCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGS--SEHRPFDFPGLRSDIDAI 120
           TEEILRDCIGRP EVI+SNKE TEEDVTDQMVNRSFS GS  SEHRP DFPGLRSDIDAI
Sbjct: 61  TEEILRDCIGRPTEVIKSNKEITEEDVTDQMVNRSFSLGSSPSEHRPLDFPGLRSDIDAI 120

Query: 121 EQSLFGSMRGSFKPPKRLR 138
           EQSLFGSM+G F+  + ++
Sbjct: 121 EQSLFGSMKGFFEAAEEIK 139

[Close]

BLAST of Lsi03G017960 vs. TrEMBL
Match: W9SK10_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016892 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-38
Identity = 88/139 (63.31%), Postives = 105/139 (75.54%), Query Frame = 1


Query: 1   MGWVWR---DENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRK 60
           MGWVWR   D+ G   S AG+  +  N++  S  DR STRKVV+SQCKTEEVEPG+FVRK
Sbjct: 1   MGWVWRNEPDDGGSEISPAGEFREVGNANTRSDGDRRSTRKVVRSQCKTEEVEPGRFVRK 60

Query: 61  CERTEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRSDIDA 120
           CERTEEILRDC+GRPVEV+QSNKE+TE+DVTDQ++  SF +GSSE    DFPGL SDIDA
Sbjct: 61  CERTEEILRDCVGRPVEVVQSNKEYTEDDVTDQVLKGSFPTGSSEGGALDFPGLHSDIDA 120

Query: 121 IEQSL-FGSMRGSFKPPKR 136
           IE+S  F  +RG     +R
Sbjct: 121 IERSFNFPGLRGDIDTIER 139

[Close]

BLAST of Lsi03G017960 vs. TrEMBL
Match: A0A0J8F6J2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108910 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.8e-38
Identity = 80/140 (57.14%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MGWVWRDENGESDSSAGDGAKFNNSSLPSSSD---RCSTRKVVKSQCKTEEVEPGKFVRK 60
           MGWVWRDE+  +DS++ D A+F + +   SSD   RCSTRK+V+S+C TEEVEPGKF+RK
Sbjct: 1   MGWVWRDEDEPNDSNSFDMAEFQDPNANRSSDSVDRCSTRKIVQSKCNTEEVEPGKFIRK 60

Query: 61  CERTEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRSDIDA 120
           CE+TE++LRDC+G+P E++QSNKE+TEEDVTD++ N S    ++  RPF+FPGLRSDI+A
Sbjct: 61  CEKTEQLLRDCVGKPTEIVQSNKEYTEEDVTDELKNGSSILSANTMRPFEFPGLRSDIEA 120

Query: 121 IEQSLFGSMRGSFKPPKRLR 138
           IE+S+FG +   F     +R
Sbjct: 121 IERSVFGGISRFFGVADEMR 140

[Close]

BLAST of Lsi03G017960 vs. TrEMBL
Match: A0A059A3D5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01914 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.3e-38
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 1


Query: 1   MGWVWRDEN-------GESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGK 60
           MGWVWRD+        G+  +S G      +     + DRCSTRKVVKS+C+TEEVEPGK
Sbjct: 1   MGWVWRDDGDGGGDGGGDPPASGGIAEYGGSGGSAGTGDRCSTRKVVKSRCRTEEVEPGK 60

Query: 61  FVRKCERTEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRS 120
           F+RKCERTEEILRDC+GRPVEV+QSNKE+TE+DVT+Q++  SF +GSS+H  FD PGL S
Sbjct: 61  FIRKCERTEEILRDCVGRPVEVVQSNKEYTEDDVTEQVLRGSFPAGSSDHGVFDLPGLHS 120

Query: 121 DIDAIEQSLFGSMRGSFKPPKRLR 138
           DIDAI ++ FG++   F+  + ++
Sbjct: 121 DIDAIGRNFFGNLDRFFEAAEEMK 144

[Close]

BLAST of Lsi03G017960 vs. TrEMBL
Match: M5VR87_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011952mg PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.4e-37
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 1


Query: 1   MGWVWRDENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGWVWRD+  ++ S+AGD    N  S+    +RCSTRKV+K+QCKTEEVEPGKFVRKCE+
Sbjct: 1   MGWVWRDDEDDNKSTAGD---INPRSV---GERCSTRKVMKTQCKTEEVEPGKFVRKCEK 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRSDIDAIEQ 120
           TE++LRDC GRPVEV+QSNKE+TE+DVT++++  S   GSS+H  FDFPGLRSDI+ IE+
Sbjct: 61  TEQLLRDCAGRPVEVVQSNKEYTEDDVTEEVLKGSVYLGSSQHGAFDFPGLRSDIEDIER 120

Query: 121 SLFGSMRGSFKPPKRLR 138
           +  G +   F   + +R
Sbjct: 121 TFMGGLSRFFDAAEEMR 131

[Close]

BLAST of Lsi03G017960 vs. TAIR10
Match: AT2G35900.1 (AT2G35900.1 unknown protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-32
Identity = 74/150 (49.33%), Postives = 97/150 (64.67%), Query Frame = 1


Query: 1   MGWVWRDENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGW+W D++  S + A    K    S  ++++ CST  VV+SQCKTEEVEPGKFVRKC++
Sbjct: 1   MGWIWIDDSSASKAGADLTDKPLGDSA-AAAENCSTTTVVRSQCKTEEVEPGKFVRKCDK 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHR-PFDFPGLRSDIDAIE 120
           TEEILR C G+P EV+QSN E TEEDVTDQMV RS      E + P +FPGLR D+DAIE
Sbjct: 61  TEEILRHCFGKPSEVVQSNTEHTEEDVTDQMVGRSALPNQFEDKNPLNFPGLRRDVDAIE 120

Query: 121 QSLFGSMRGSFKPPKRLRMVSL-VLSEIHP 149
           +     M+  F   + +      ++ + HP
Sbjct: 121 RHFLSGMKSFFDAAEEMTSSLFDIMGDHHP 149

[Close]

BLAST of Lsi03G017960 vs. NCBI nr
Match: gi|659084564|ref|XP_008442953.1| (PREDICTED: uncharacterized protein LOC103486704 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 3.9e-57
Identity = 113/137 (82.48%), Postives = 123/137 (89.78%), Query Frame = 1


Query: 1   MGWVWRDENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGWVW D+ G+ DSSA DGAKF+NS+ PSSSDRCSTR VV+S CKTEEVEPGKFVRKCER
Sbjct: 1   MGWVWIDDTGDLDSSAVDGAKFDNSTYPSSSDRCSTRNVVRSHCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRSDIDAIEQ 120
           TEEILRDCIGRP EVIQSNKEFTEEDVTDQMVNRSF  GSSEHRPFDFPGLRSDIDAIEQ
Sbjct: 61  TEEILRDCIGRPTEVIQSNKEFTEEDVTDQMVNRSFPLGSSEHRPFDFPGLRSDIDAIEQ 120

Query: 121 SLFGSMRGSFKPPKRLR 138
           SLFGSM+G F+  + ++
Sbjct: 121 SLFGSMKGFFEAAEEIK 137

[Close]

BLAST of Lsi03G017960 vs. NCBI nr
Match: gi|449437498|ref|XP_004136529.1| (PREDICTED: uncharacterized protein LOC101211397 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 5.9e-53
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 1   MGWVWRDENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGWVWRD+  +SDS A D  KFNNS+ PSSSD CSTR VV+S CKTEEVEPGKFVRKCER
Sbjct: 1   MGWVWRDDTDDSDSFAADADKFNNSTSPSSSDWCSTRNVVRSHCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGS--SEHRPFDFPGLRSDIDAI 120
           TEEILRDCIGRP EVI+SNKE TEEDVTDQMVNRSFS GS  SEHRP DFPGLRSDIDAI
Sbjct: 61  TEEILRDCIGRPTEVIKSNKEITEEDVTDQMVNRSFSLGSSPSEHRPLDFPGLRSDIDAI 120

Query: 121 EQSLFGSMRGSFKPPKRLR 138
           EQSLFGSM+G F+  + ++
Sbjct: 121 EQSLFGSMKGFFEAAEEIK 139

[Close]

BLAST of Lsi03G017960 vs. NCBI nr
Match: gi|703139374|ref|XP_010106964.1| (hypothetical protein L484_016892 [Morus notabilis])

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 88/139 (63.31%), Postives = 105/139 (75.54%), Query Frame = 1


Query: 1   MGWVWR---DENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRK 60
           MGWVWR   D+ G   S AG+  +  N++  S  DR STRKVV+SQCKTEEVEPG+FVRK
Sbjct: 1   MGWVWRNEPDDGGSEISPAGEFREVGNANTRSDGDRRSTRKVVRSQCKTEEVEPGRFVRK 60

Query: 61  CERTEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRSDIDA 120
           CERTEEILRDC+GRPVEV+QSNKE+TE+DVTDQ++  SF +GSSE    DFPGL SDIDA
Sbjct: 61  CERTEEILRDCVGRPVEVVQSNKEYTEDDVTDQVLKGSFPTGSSEGGALDFPGLHSDIDA 120

Query: 121 IEQSL-FGSMRGSFKPPKR 136
           IE+S  F  +RG     +R
Sbjct: 121 IERSFNFPGLRGDIDTIER 139

[Close]

BLAST of Lsi03G017960 vs. NCBI nr
Match: gi|694369236|ref|XP_009362665.1| (PREDICTED: uncharacterized protein LOC103952723 [Pyrus x bretschneideri])

HSP 1 Score: 166.4 bits (420), Expect = 4.1e-38
Identity = 84/138 (60.87%), Postives = 108/138 (78.26%), Query Frame = 1


Query: 1   MGWVWRD-ENGESDSSAGDGAKFNNSSLPSSSDRCSTRKVVKSQCKTEEVEPGKFVRKCE 60
           MGWVWRD E G+S+SSA D       +  S  +RCSTRKVVK+QCKTEEVEPGKF+RKCE
Sbjct: 1   MGWVWRDDEEGDSNSSALD------INPRSDGERCSTRKVVKTQCKTEEVEPGKFMRKCE 60

Query: 61  RTEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRSDIDAIE 120
           +TE++LRDC GRPVEV+QSNKE+TE+DVTD+M+ RS + GSS+H  FDFPGL+SDI+ IE
Sbjct: 61  KTEQLLRDCAGRPVEVVQSNKEYTEDDVTDEMLKRSVTFGSSQHGAFDFPGLQSDIEDIE 120

Query: 121 QSLFGSMRGSFKPPKRLR 138
           ++  G +   F+  + L+
Sbjct: 121 RNFMGGLNRFFEAAEELK 132

[Close]

BLAST of Lsi03G017960 vs. NCBI nr
Match: gi|747062515|ref|XP_011077772.1| (PREDICTED: uncharacterized protein LOC105161688 [Sesamum indicum])

HSP 1 Score: 165.6 bits (418), Expect = 7.0e-38
Identity = 81/141 (57.45%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MGWVWRDENGES-DSSAGDGAKFNNSSLPS---SSDRCSTRKVVKSQCKTEEVEPGKFVR 60
           MGWVW++++ +   SS GD  +F  S  P      DRC+TRKVV SQC+TEEVEPGKF+R
Sbjct: 1   MGWVWKNDDSDYVSSSVGDVGEFRGSDNPKVDDKGDRCATRKVVTSQCRTEEVEPGKFIR 60

Query: 61  KCERTEEILRDCIGRPVEVIQSNKEFTEEDVTDQMVNRSFSSGSSEHRPFDFPGLRSDID 120
           KCE+TE+I +DC+GRP E++QSNKE+TEEDVTDQMVN SF+  S+E  PF FPGLRSDI+
Sbjct: 61  KCEKTEQIFKDCVGRPSEMVQSNKEYTEEDVTDQMVNGSFALESAEREPFYFPGLRSDIE 120

Query: 121 AIEQSLFGSMRGSFKPPKRLR 138
           AIE+  FG +   F+  + ++
Sbjct: 121 AIERGFFGGINRFFEAAEEMK 141

The following BLAST results are available for this feature:

BLAST of Lsi03G017960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G017960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGU7_CUCSA	4.1e-53	78.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782830 PE=4 SV=1	[more]
W9SK10_9ROSA	1.7e-38	63.31	Uncharacterized protein OS=Morus notabilis GN=L484_016892 PE=4 SV=1	[more]
A0A0J8F6J2_BETVU	4.8e-38	57.14	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108910 PE=4 S...	[more]
A0A059A3D5_EUCGR	6.3e-38	56.25	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01914 PE=4 SV=1	[more]
M5VR87_PRUPE	5.4e-37	58.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011952mg PE=4 SV=1	[more]

BLAST of Lsi03G017960 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35900.1	2.7e-32	49.33	unknown protein	[more]

BLAST of Lsi03G017960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084564\|ref\|XP_008442953.1\|	3.9e-57	82.48	PREDICTED: uncharacterized protein LOC103486704 [Cucumis melo]	[more]
gi\|449437498\|ref\|XP_004136529.1\|	5.9e-53	78.42	PREDICTED: uncharacterized protein LOC101211397 [Cucumis sativus]	[more]
gi\|703139374\|ref\|XP_010106964.1\|	2.4e-38	63.31	hypothetical protein L484_016892 [Morus notabilis]	[more]
gi\|694369236\|ref\|XP_009362665.1\|	4.1e-38	60.87	PREDICTED: uncharacterized protein LOC103952723 [Pyrus x bretschneideri]	[more]
gi\|747062515\|ref\|XP_011077772.1\|	7.0e-38	57.45	PREDICTED: uncharacterized protein LOC105161688 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G017960.1	Lsi03G017960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35722	FAMILY NOT NAMED	coord: 2..159 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G017960	Csa3G782830	Cucumber (Chinese Long) v2	culsiB186
Lsi03G017960	CSPI03G35860	Wild cucumber (PI 183967)	cpilsiB184
Lsi03G017960	Cucsa.242100	Cucumber (Gy14) v1	cgylsiB402
Lsi03G017960	CmaCh06G005420	Cucurbita maxima (Rimu)	cmalsiB754
Lsi03G017960	CmoCh06G005440	Cucurbita moschata (Rifu)	cmolsiB747
Lsi03G017960	Cla017600	Watermelon (97103) v1	lsiwmB240
Lsi03G017960	MELO3C009564	Melon (DHL92) v3.5.1	lsimeB260
Lsi03G017960	ClCG10G018080	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G017960	MELO3C009564.2	Melon (DHL92) v3.6.1	lsimedB273
Lsi03G017960	Cla97C10G201050	Watermelon (97103) v2	lsiwmbB218
Lsi03G017960	Bhi11G002051	Wax gourd	lsiwgoB301
Lsi03G017960	Cp4.1LG08g09490	Cucurbita pepo (Zucchini)	cpelsiB707
Lsi03G017960	CsGy3G033320	Cucumber (Gy14) v2	cgyblsiB171
Lsi03G017960	Carg16233	Silver-seed gourd	carlsiB620
Lsi03G017960	CsaV3_3G038210	Cucumber (Chinese Long) v3	cuclsiB203

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G017960	Silver-seed gourd	carlsiB225
Lsi03G017960	Cucumber (Chinese Long) v3	cuclsiB207
Lsi03G017960	Watermelon (97103) v2	lsiwmbB228
Lsi03G017960	Wax gourd	lsiwgoB330
Lsi03G017960	Bottle gourd (USVL1VR-Ls)	lsilsiB040
Lsi03G017960	Cucurbita maxima (Rimu)	cmalsiB242
Lsi03G017960	Cucurbita maxima (Rimu)	cmalsiB522
Lsi03G017960	Cucurbita maxima (Rimu)	cmalsiB574
Lsi03G017960	Cucurbita moschata (Rifu)	cmolsiB230
Lsi03G017960	Cucurbita moschata (Rifu)	cmolsiB507
Lsi03G017960	Cucurbita moschata (Rifu)	cmolsiB552
Lsi03G017960	Cucurbita pepo (Zucchini)	cpelsiB243
Lsi03G017960	Cucurbita pepo (Zucchini)	cpelsiB503
Lsi03G017960	Watermelon (Charleston Gray)	lsiwcgB235
Lsi03G017960	Watermelon (97103) v1	lsiwmB272