Lsi03G017380 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G017380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDNAJ heat shock N-terminal domain-containing protein, putative
Locationchr03 : 28760983 .. 28762385 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTGAGGCGAATGATCCTTCCTCGAGTAGAGCCACTTCATGGTTTAAAAGGCAGTACTCATATAGGGGCTCTAAAACAGACAGGACCAACCAGAGGCCACGGTGTTGGAGTAGAAGTAAGTAACCTCTTTATTACATATCCTGAACAATACTAATGTATATTGGCACTTTTTTTTTGTATTAATGCAAAAAAAAAAAAAAAAAAGGAAAAAAAAAATCATTCAAGGTAGGAGTTGTAACTCATAATGGTTTGCAAGTAAAAGGACTAGTGAGACATGAATTGCAACATTTGGTTTCATTTACAATGTTTTCTAAAAACATATTTTTAAAGTTCTAAGCCATGACTTTTTTTGGATAAGATTCTAAGCCACGTCTTTGGTTTGTATCATTGGTGGTGGCATTATTTCTATTTCGGATCTGTCTACCGTTTTTAAAATCATGTTGACTAAGTGTCCCACTGCTGGTCTTATTCCATAATGGTGTTAGATTGAGATCCCTAGCTTGTTTGGGAAATTATTTAGAAAATAGTATAGGTCTTGTTTGGTAACGATTTTGTTTTTAGTTTTTGAACAAGATACAATTGTGTCCTTGAATTCTTAGTTAAATTCTAAAACCAAAAACTACTGTTTTAAGTTTTCAAAATTTGGCTAGTTTTTTAAAATATTGGTGGATAGTGGATAACAAAACAAAGAAACTAAAAACCAAAAATTAAATGGTTACCAAACGGGGCCTTAATGTTATTGGTTCCAATAATCGATTCTATTTTTTTTTTTTTTTTTTTTTAAAGAATTAGGATCAAATGACTTCTGTAAAGGTTCAGCATGTTGAAAGTTAACATCACTATTCTTTCAAAAATAAAATTAAAATCATTATTCTTTCAAGAAGAAAATTAAACTCATTATTCTTTCAAGAAGAAAATTAAAATCATTATTCTTTCAAGAAGAAAATTAAAATCACCATTCACAGATCTTAGAAAAAAATAAGAATAAAAAATCAACTATTCACAAAATCCGTGATTTGAAAATTAAAAGTTACTTTCATTTATTCTAAGAAAATAAAACTCATCCAGTTATCTCTGAATTTTTTTTCTAATTCTTCCTCACCAGGTTTTGAGTTTACTGAAGATGACCCTAATCTTGAGACTGTCTTCCGATCTGCATTTGGTGGAAATCGGTCTTATTACTGGTCTTTCATTAATGAAGAGAATCCTCAATGGAGGAGCTCAACAAATTACTCAAGTAACTATGGGAGATCTTGGAACTGGCGACATAGGGTTGATGACGATTATGACTCTTCTAATGAATATGAGGATTCAGAGGCAAATTTGGCACCGCATAGACTTGCTCTTGGACTACGAGTATCTGGTCCACTTAAACTTGAAGATGTTAAAAATGCGTGA

mRNA sequence

ATGAGGGTGAGGCGAATGATCCTTCCTCGAGTAGAGCCACTTCATGGTTTAAAAGGCAGTACTCATATAGGGGCTCTAAAACAGACAGGACCAACCAGAGGCCACGGTGTTGGAGTAGAAGTAAGTTTTGAGTTTACTGAAGATGACCCTAATCTTGAGACTGTCTTCCGATCTGCATTTGGTGGAAATCGGTCTTATTACTGGTCTTTCATTAATGAAGAGAATCCTCAATGGAGGAGCTCAACAAATTACTCAAGTAACTATGGGAGATCTTGGAACTGGCGACATAGGGTTGATGACGATTATGACTCTTCTAATGAATATGAGGATTCAGAGGCAAATTTGGCACCGCATAGACTTGCTCTTGGACTACGAGTATCTGGTCCACTTAAACTTGAAGATGTTAAAAATGCGTGA

Coding sequence (CDS)

ATGAGGGTGAGGCGAATGATCCTTCCTCGAGTAGAGCCACTTCATGGTTTAAAAGGCAGTACTCATATAGGGGCTCTAAAACAGACAGGACCAACCAGAGGCCACGGTGTTGGAGTAGAAGTAAGTTTTGAGTTTACTGAAGATGACCCTAATCTTGAGACTGTCTTCCGATCTGCATTTGGTGGAAATCGGTCTTATTACTGGTCTTTCATTAATGAAGAGAATCCTCAATGGAGGAGCTCAACAAATTACTCAAGTAACTATGGGAGATCTTGGAACTGGCGACATAGGGTTGATGACGATTATGACTCTTCTAATGAATATGAGGATTCAGAGGCAAATTTGGCACCGCATAGACTTGCTCTTGGACTACGAGTATCTGGTCCACTTAAACTTGAAGATGTTAAAAATGCGTGA

Protein sequence

MRVRRMILPRVEPLHGLKGSTHIGALKQTGPTRGHGVGVEVSFEFTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDDDYDSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA
Homology
[Close]
BLAST of Lsi03G017380 vs. TrEMBL
Match: A0A0A0LF16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806290 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.0e-40
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1 

Query: 42  SFEFTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSN-------------Y 101
           SFEFTEDDP++ETVF+SAFGGNRSYYWSFINEENPQW+SSTN S+N             Y
Sbjct: 116 SFEFTEDDPDVETVFKSAFGGNRSYYWSFINEENPQWKSSTNNSNNYRRSWTWQHNSNTY 175

Query: 102 GRSWNWRHRVDDDYDSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
           GRSW+W+HRVD+DYDSSNEYE+SEANL  HRLALGL+ SGPLKLEDVKNA
Sbjct: 176 GRSWSWQHRVDEDYDSSNEYENSEANLVSHRLALGLQASGPLKLEDVKNA 225

[Close]
BLAST of Lsi03G017380 vs. TrEMBL
Match: A5BK80_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009634 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-30
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 1 

Query: 43  FEFTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDDDY 102
           F+F EDD  +ET+ RSAFGG+R++YWSFINEENPQW SS+ Y +NY  SWNWR R+D++Y
Sbjct: 201 FQFCEDDXEVETILRSAFGGSRTFYWSFINEENPQWGSSSGYRNNYRSSWNWRDRMDEEY 260

Query: 103 DSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
             S + + SE++LA HR+ALGL VSGPLKLE+VKNA
Sbjct: 261 GYSTDSDSSESDLASHRMALGLSVSGPLKLEEVKNA 296

[Close]
BLAST of Lsi03G017380 vs. TrEMBL
Match: D7TID7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06530 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-30
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 1 

Query: 43  FEFTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDDDY 102
           F+F EDD  +ET+ RSAFGG+R++YWSFINEENPQW SS+ Y +NY  SWNWR R+D++Y
Sbjct: 124 FQFCEDDTEVETILRSAFGGSRTFYWSFINEENPQWGSSSGYRNNYRSSWNWRDRMDEEY 183

Query: 103 DSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
             S + + SE++LA HR+ALGL VSGPLKLE+VKNA
Sbjct: 184 GYSTDSDSSESDLASHRMALGLSVSGPLKLEEVKNA 219

[Close]
BLAST of Lsi03G017380 vs. TrEMBL
Match: A0A0L9U7M8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g222500 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 45  FTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDDDYDS 104
           F EDD ++ET+FRSAFGGNR +YWSFINEENPQWR +  +S N+GRSWNWRH  ++DY+S
Sbjct: 120 FCEDDFDVETIFRSAFGGNRFFYWSFINEENPQWRRAERFS-NFGRSWNWRHESENDYES 179

Query: 105 SNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
           S+E + S  +L P RLALGL  SGPLKLEDVKNA
Sbjct: 180 SSESDSSGLDLTPDRLALGLSASGPLKLEDVKNA 212

[Close]
BLAST of Lsi03G017380 vs. TrEMBL
Match: A0A0S3RXL3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G288300 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 45  FTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDDDYDS 104
           F EDD ++ET+FRSAFGGNR +YWSFINEENPQWR +  +S N+GRSWNWRH  ++DY+S
Sbjct: 120 FCEDDFDVETIFRSAFGGNRFFYWSFINEENPQWRRAERFS-NFGRSWNWRHESENDYES 179

Query: 105 SNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
           S+E + S  +L P RLALGL  SGPLKLEDVKNA
Sbjct: 180 SSESDSSGLDLTPDRLALGLSASGPLKLEDVKNA 212

[Close]
BLAST of Lsi03G017380 vs. TAIR10
Match: AT2G42080.1 (AT2G42080.1 Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 1 

Query: 42  SFEFTE--DDPNLETVFRSAFGGNRSYYWSFINEEN-PQWRS-STNYSSNYGRSWNWRHR 101
           +F+F E  +D +++ VFR+AFGG+R + +SF +EE+ P+WR  S+ +S+N  RSW  ++R
Sbjct: 116 NFDFCEVDEDFDVDYVFRTAFGGSRGFSFSFTHEEDEPRWRHHSSRFSNNSNRSWRSKYR 175

Query: 102 VDDD-----YDSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
           +D+D     Y S +   +SE N   HR ALGL  SGPL L+DVK+A
Sbjct: 176 LDEDEEEEDYTSDSSDSESEPNQVSHRQALGLSPSGPLNLKDVKHA 221

[Close]
BLAST of Lsi03G017380 vs. TAIR10
Match: AT3G58020.1 (AT3G58020.1 Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-11
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 1 

Query: 43  FEFTEDDPN--LETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDD 102
           F+F+E D    +E   ++A GG+R + WS   E   +   S  YS+N+ +SW  R+R+D+
Sbjct: 110 FDFSEVDEGYQIEYFLKTALGGSRGFSWSNTREGGTR---SGRYSNNFRKSWGSRYRLDE 169

Query: 103 DYDSSNE-YE-------DSEANLAPHRLALGLRVSGPLKLEDVKNA 139
           + +   E YE       D+E N   HR  LGL  SGPL LEDVK A
Sbjct: 170 EEEEEEEEYEYSSTGVSDTEPNQESHRQTLGLSSSGPLNLEDVKIA 212

[Close]
BLAST of Lsi03G017380 vs. NCBI nr
Match: gi|449437573|ref|XP_004136566.1| (PREDICTED: uncharacterized protein LOC101221203 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 2.9e-40
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1 

Query: 42  SFEFTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSN-------------Y 101
           SFEFTEDDP++ETVF+SAFGGNRSYYWSFINEENPQW+SSTN S+N             Y
Sbjct: 116 SFEFTEDDPDVETVFKSAFGGNRSYYWSFINEENPQWKSSTNNSNNYRRSWTWQHNSNTY 175

Query: 102 GRSWNWRHRVDDDYDSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
           GRSW+W+HRVD+DYDSSNEYE+SEANL  HRLALGL+ SGPLKLEDVKNA
Sbjct: 176 GRSWSWQHRVDEDYDSSNEYENSEANLVSHRLALGLQASGPLKLEDVKNA 225

[Close]
BLAST of Lsi03G017380 vs. NCBI nr
Match: gi|659084744|ref|XP_008443050.1| (PREDICTED: uncharacterized protein LOC103486761 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 4.2e-39
Identity = 83/110 (75.45%), Postives = 90/110 (81.82%), Query Frame = 1 

Query: 42  SFEFTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSS-------------NY 101
           SFEFTEDDP++ETVFRSAFGG RSYYWSFINEENPQWRSSTN SS             NY
Sbjct: 117 SFEFTEDDPDVETVFRSAFGGYRSYYWSFINEENPQWRSSTNNSSNYGRSWTWQYKSNNY 176

Query: 102 GRSWNWRHRVDDDYDSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
           GRSW+W+HRVD+DYDS N YEDS+ANL  HRLALGL+ SGPLKLEDVKNA
Sbjct: 177 GRSWSWQHRVDEDYDSFNGYEDSDANLVSHRLALGLQASGPLKLEDVKNA 226

[Close]
BLAST of Lsi03G017380 vs. NCBI nr
Match: gi|147790737|emb|CAN63574.1| (hypothetical protein VITISV_009634 [Vitis vinifera])

HSP 1 Score: 139.4 bits (350), Expect = 4.6e-30
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 1 

Query: 43  FEFTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDDDY 102
           F+F EDD  +ET+ RSAFGG+R++YWSFINEENPQW SS+ Y +NY  SWNWR R+D++Y
Sbjct: 201 FQFCEDDXEVETILRSAFGGSRTFYWSFINEENPQWGSSSGYRNNYRSSWNWRDRMDEEY 260

Query: 103 DSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
             S + + SE++LA HR+ALGL VSGPLKLE+VKNA
Sbjct: 261 GYSTDSDSSESDLASHRMALGLSVSGPLKLEEVKNA 296

[Close]
BLAST of Lsi03G017380 vs. NCBI nr
Match: gi|225441457|ref|XP_002279725.1| (PREDICTED: uncharacterized protein LOC100250423 [Vitis vinifera])

HSP 1 Score: 139.4 bits (350), Expect = 4.6e-30
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 1 

Query: 43  FEFTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDDDY 102
           F+F EDD  +ET+ RSAFGG+R++YWSFINEENPQW SS+ Y +NY  SWNWR R+D++Y
Sbjct: 124 FQFCEDDTEVETILRSAFGGSRTFYWSFINEENPQWGSSSGYRNNYRSSWNWRDRMDEEY 183

Query: 103 DSSNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
             S + + SE++LA HR+ALGL VSGPLKLE+VKNA
Sbjct: 184 GYSTDSDSSESDLASHRMALGLSVSGPLKLEEVKNA 219

[Close]
BLAST of Lsi03G017380 vs. NCBI nr
Match: gi|920695618|gb|KOM38843.1| (hypothetical protein LR48_Vigan03g222500 [Vigna angularis])

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-29
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 45  FTEDDPNLETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRHRVDDDYDS 104
           F EDD ++ET+FRSAFGGNR +YWSFINEENPQWR +  +S N+GRSWNWRH  ++DY+S
Sbjct: 120 FCEDDFDVETIFRSAFGGNRFFYWSFINEENPQWRRAERFS-NFGRSWNWRHESENDYES 179

Query: 105 SNEYEDSEANLAPHRLALGLRVSGPLKLEDVKNA 139
           S+E + S  +L P RLALGL  SGPLKLEDVKNA
Sbjct: 180 SSESDSSGLDLTPDRLALGLSASGPLKLEDVKNA 212

The following BLAST results are available for this feature:
BLAST of Lsi03G017380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G017380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF16_CUCSA2.0e-4075.45Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806290 PE=4 SV=1[more]
A5BK80_VITVI3.2e-3064.58Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009634 PE=4 SV=1[more]
D7TID7_VITVI3.2e-3064.58Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06530 PE=4 SV=... [more]
A0A0L9U7M8_PHAAN1.6e-2968.09Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g222500 PE=4 SV=1[more]
A0A0S3RXL3_PHAAN1.6e-2968.09Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G288300 PE=... [more]
BLAST of Lsi03G017380 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42080.18.2e-1745.28 Chaperone DnaJ-domain superfamily protein[more]
AT3G58020.12.3e-1139.62 Chaperone DnaJ-domain superfamily protein[more]
BLAST of Lsi03G017380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437573|ref|XP_004136566.1|2.9e-4075.45PREDICTED: uncharacterized protein LOC101221203 [Cucumis sativus][more]
gi|659084744|ref|XP_008443050.1|4.2e-3975.45PREDICTED: uncharacterized protein LOC103486761 [Cucumis melo][more]
gi|147790737|emb|CAN63574.1|4.6e-3064.58hypothetical protein VITISV_009634 [Vitis vinifera][more]
gi|225441457|ref|XP_002279725.1|4.6e-3064.58PREDICTED: uncharacterized protein LOC100250423 [Vitis vinifera][more]
gi|920695618|gb|KOM38843.1|2.3e-2968.09hypothetical protein LR48_Vigan03g222500 [Vigna angularis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0098655 cation transmembrane transport
biological_process GO:0006812 cation transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0008324 cation transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G017380.1Lsi03G017380.1mRNA


Synteny